Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004621

Physical Location & Seq

Genomic Coordinates Reverse (-)

20131553 .. 20134886

Gene Structure 3334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g26730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGCTCTCGCTCTCTCTGGGTCGATCGGTTGCTGTTTCACCTACTATAAATCGCTATGGTTCGTATAGTTTGCATGGCTCCACCTCCAGATTCAACCACAAATCAAGCTTCAGGTTGCGATCCATGGCGTCCGAGTCTGACCCTTCTTCTTTTGCTCAATCTATCAATTCTGAGTCAGCTGAAACTAACCCATCTGGATTCTGTATTATAGAGGGACCTGAAACAGTGCAAGACTTTGCCAAAATGGAACTGCAAGAGATTCAAGATAATATTCGGAGTCGCCGCAACAAAATTTTTTTGCATATGGAAGAGGTCCGCAGGCTGAGGATTCAACAGAGGATAAAAAACGCAGAGCTTGGAATGTCAAGTGAAGAGCAAGAAAATGAACTTCCAAACTTCCCATCATTCATTCCATTCTTGCCTCCCTTGACTTCAGCAAACCTTAAGCAGTATTATGCTGTTTGTTTTTCTCTTATCACGGGAATCATCATTTTCGGAGGCCTCCTAGCACCCGCTTTAGAGTTGAAGCTGGGAATAGGAGGTACGTCATATGAAGACTTCATACGTAGTGTGCATCTGCCTATGCAGTTGAGTGAAGTTGATCCCATAGTTGCATCCTTCTCGGGAGGAGCAGTTGGAGTGATCTCCGCATTGATGGTAGTTGAAATAAACAATGTAAAACTGCAGGAGCATAAGAGATGCAAATATTGTCTTGGAACTGGATATCTTGCTTGTGCTCGGTGTTCAAGCACAGGAACCCTTGTGCTTGCTGAAGCAGTATCAACCATTGACGGTGGAGATCAGCCTCTGTCACCACCTAAAACCGAAAGATGTTCAAACTGCTCAGGAGCCGGAAAGGTTATGTGCCCTACATGCCTTTGCACTGGGATGGCCATGGCTAGCGAGCACGACCCTAGAATTGATCCCTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0019216 GO:0019222 GO:0019747 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

312

Amino Acids

33.89

Weight (kDa)

5.92

Isoelectric Point (pI)

60.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61670 AT5G61670
fragaria_vesca	FvH4_7g26730 FvH4_7g26730 FvH4_7g26730
malus_domestica	MD01G1175600.v1.1 MD04G1149100.v1.1 MD07G1241900.v1.1 MD07G1243400.v1.1 MD07G1243800.v1.1 MD07G1243900.v1.1 MD07G1244500.v1.1 MD07G1245000.v1.1 MD07G1245500.v1.1 MD07G1245900.v1.1
prunus_persica	Prupe.2G270800_v2.0.a1
pyrus_communis	pycom01g18650 pycom07g21830 pycom07g21900 pycom07g22020
rosa_chinensis	RchiOBHm_Chr1g0373321
rosa_laevigata	RLG00000026827
rosa_multiflora	Rmu_sc0031228.1_g000001 Rmu_ssc0000435.1_g000006
rosa_roxburghii	Rroxscaffold_4G00284270
rosa_rugosa	Rorug01G0377000
rosa_samantha	Rh1AG386200 Rh1BG350300 Rh1CG363400 Rh1DG381200
rosa_wichuraiana	Rw1G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	283, 316, 513, 648
AclWI	GGATC	3 cut(s)	114, 596, 917
AcoI	YGGCCR	1 cut(s)	891
AcsI	RAATTY	1 cut(s)	291
AcuI	CTGAAG	3 cut(s)	94, 417, 792
AcyI	GRCGYC	1 cut(s)	128
AfaI	GTAC	1 cut(s)	544
AflII	CTTAAG	1 cut(s)	443
AgsI	TTSAA	7 cut(s)	94, 263, 332, 526, 665, 747, 837
AluBI	AGCT	4 cut(s)	108, 179, 355, 529
AluI	AGCT	4 cut(s)	108, 179, 355, 529
Alw21I	GWGCWC	2 cut(s)	739, 909
AlwI	GGATC	3 cut(s)	114, 596, 917
AlwNI	CAGNNNCTG	1 cut(s)	808
Ama87I	CYCGRG	1 cut(s)	622
AoxI	GGCC	2 cut(s)	499, 891
ApoI	RAATTY	1 cut(s)	291
AspS9I	GGNCC	2 cut(s)	215, 313
AsuHPI	GGTGA	2 cut(s)	30, 804
AsuNHI	GCTAGC	1 cut(s)	899
AvaI	CYCGRG	1 cut(s)	622
AvaII	GGWCC	2 cut(s)	215, 313
BaeGI	GKGCMC	1 cut(s)	869
BalI	TGGCCA	1 cut(s)	893
BarI	GAAGNNNNNNTAC	2 cut(s)	546, 578
BbsI	GAAGAC	1 cut(s)	561
Bbv12I	GWGCWC	2 cut(s)	739, 909
BbvCI	CCTCAGC	1 cut(s)	323
BccI	CCATC	4 cut(s)	199, 409, 649, 883
BcgI	CGANNNNNNTGC	2 cut(s)	603, 637
BfaI	CTAG	3 cut(s)	506, 900, 915
BfmI	CTRYAG	1 cut(s)	683
BfrI	CTTAAG	1 cut(s)	443
BisI	GCNGC	1 cut(s)	283
BlsI	GCNGC	1 cut(s)	284
Bme18I	GGWCC	2 cut(s)	215, 313
BmeT110I	CYCGRG	1 cut(s)	622
BmgT120I	GGNCC	2 cut(s)	215, 313
BmiI	GGNNCC	4 cut(s)	79, 216, 757, 850
BmrI	ACTGGG	1 cut(s)	894
BmsI	GCATC	3 cut(s)	583, 623, 689
BmtI	GCTAGC	1 cut(s)	903
BmuI	ACTGGG	1 cut(s)	894
BpiI	GAAGAC	1 cut(s)	561
BpmI	CTGGAG	1 cut(s)	70
Bpu10I	CCTNAGC	2 cut(s)	323, 844
BsaAI	YACGTR	1 cut(s)	566
BsaHI	GRCGYC	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	123, 894
BsaXI	ACNNNNNCTCC	2 cut(s)	618, 648
Bse1I	ACTGG	2 cut(s)	724, 889
BseDI	CCNNGG	2 cut(s)	123, 894
BseGI	GGATG	2 cut(s)	614, 894
BseMII	CTCAG	3 cut(s)	162, 314, 858
BseNI	ACTGG	2 cut(s)	724, 889
BseRI	GAGGAG	1 cut(s)	642
BseSI	GKGCMC	1 cut(s)	869
BseYI	CCCAGC	1 cut(s)	529
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	2 cut(s)	501, 893
BsiEI	CGRYCG	1 cut(s)	26
BsiHKAI	GWGCWC	2 cut(s)	739, 909
BsiHKCI	CYCGRG	1 cut(s)	622
BsiSI	CCGG	1 cut(s)	852
BslFI	GGGAC	1 cut(s)	228
BsmFI	GGGAC	1 cut(s)	228
BsnI	GGCC	2 cut(s)	501, 893
BsoBI	CYCGRG	1 cut(s)	622
Bsp1286I	GDGCHC	3 cut(s)	739, 869, 909
Bsp143I	GATC	6 cut(s)	23, 119, 601, 642, 799, 922
Bsp19I	CCATGG	2 cut(s)	123, 894
BspACI	CCGC	4 cut(s)	283, 316, 513, 648
BspANI	GGCC	2 cut(s)	501, 893
BspCNI	CTCAG	3 cut(s)	163, 315, 857
BspLI	GGNNCC	4 cut(s)	79, 216, 757, 850
BspMAI	CTGCAG	1 cut(s)	687
BspOI	GCTAGC	1 cut(s)	903
BspPI	GGATC	3 cut(s)	114, 596, 917
BspQI	GCTCTTC	1 cut(s)	366
BspTI	CTTAAG	1 cut(s)	443
BsrI	ACTGG	2 cut(s)	724, 889
BssECI	CCNNGG	2 cut(s)	123, 894
BssMI	GATC	6 cut(s)	23, 119, 601, 642, 799, 922
BssNI	GRCGYC	1 cut(s)	128
BssT1I	CCWWGG	2 cut(s)	123, 894
Bst4CI	ACNGT	2 cut(s)	226, 794
Bst6I	CTCTTC	2 cut(s)	303, 366
BstACI	GRCGYC	1 cut(s)	128
BstAFI	CTTAAG	1 cut(s)	443
BstBAI	YACGTR	1 cut(s)	566
BstC8I	GCNNGC	4 cut(s)	320, 768, 901, 905
BstDEI	CTNAG	3 cut(s)	171, 323, 844
BstDSI	CCRYGG	2 cut(s)	123, 894
BstF5I	GGATG	2 cut(s)	614, 894
BstKTI	GATC	6 cut(s)	26, 122, 604, 645, 802, 925
BstMBI	GATC	6 cut(s)	23, 119, 601, 642, 799, 922
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	1 cut(s)	873
BstNSI	RCATGY	1 cut(s)	876
BstSFI	CTRYAG	1 cut(s)	683
BstSLI	GKGCMC	1 cut(s)	869
BstSNI	TACGTA	1 cut(s)	566
BstV2I	GAAGAC	1 cut(s)	561
BsuRI	GGCC	2 cut(s)	501, 893
BtgI	CCRYGG	2 cut(s)	123, 894
BtsCI	GGATG	2 cut(s)	614, 894
BtsIMutI	CAGTG	2 cut(s)	231, 882
Cac8I	GCNNGC	4 cut(s)	320, 768, 901, 905
CaiI	CAGNNNCTG	1 cut(s)	808
Cfr13I	GGNCC	2 cut(s)	215, 313
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	543
CviAII	CATG	4 cut(s)	74, 124, 873, 895
CviQI	GTAC	1 cut(s)	543
DdeI	CTNAG	3 cut(s)	171, 323, 844
DpnI	GATC	6 cut(s)	25, 121, 603, 644, 801, 924
DpnII	GATC	6 cut(s)	23, 119, 601, 642, 799, 922
EaeI	YGGCCR	1 cut(s)	891
Eam1104I	CTCTTC	2 cut(s)	303, 366
EarI	CTCTTC	2 cut(s)	303, 366
Eco105I	TACGTA	1 cut(s)	566
Eco130I	CCWWGG	2 cut(s)	123, 894
Eco147I	AGGCCT	1 cut(s)	501
Eco32I	GATATC	1 cut(s)	725
Eco47I	GGWCC	2 cut(s)	215, 313
Eco57I	CTGAAG	3 cut(s)	94, 417, 792
Eco88I	CYCGRG	1 cut(s)	622
EcoO109I	RGGNCCY	1 cut(s)	215
EcoRV	GATATC	1 cut(s)	725
EcoT14I	CCWWGG	2 cut(s)	123, 894
ErhI	CCWWGG	2 cut(s)	123, 894
FaeI	CATG	4 cut(s)	77, 127, 876, 898
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	4 cut(s)	73, 123, 872, 894
FauI	CCCGC	1 cut(s)	520
FauNDI	CATATG	2 cut(s)	303, 550
Fnu4HI	GCNGC	1 cut(s)	283
FokI	GGATG	2 cut(s)	601, 901
Fsp4HI	GCNGC	1 cut(s)	283
FspBI	CTAG	3 cut(s)	506, 900, 915
GluI	GCNGC	1 cut(s)	283
GsaI	CCCAGC	1 cut(s)	533
GsuI	CTGGAG	1 cut(s)	70
HaeIII	GGCC	2 cut(s)	501, 893
HapII	CCGG	1 cut(s)	852
HgaI	GACGC	1 cut(s)	117
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	4 cut(s)	77, 127, 876, 898
HindIII	AAGCTT	1 cut(s)	106
HinfI	GANTC	8 cut(s)	90, 134, 173, 198, 259, 277, 328, 483
HpaII	CCGG	1 cut(s)	852
HphI	GGTGA	2 cut(s)	30, 804
Hpy188I	TCNGA	5 cut(s)	133, 139, 172, 276, 497
Hpy188III	TCNNGA	5 cut(s)	87, 195, 263, 624, 846
HpyAV	CCTTC	2 cut(s)	153, 628
HpyCH4III	ACNGT	2 cut(s)	226, 794
HpyCH4IV	ACGT	2 cut(s)	545, 565
HpyF10VI	GCNNNNNNNGC	1 cut(s)	873
HpyF3I	CTNAG	3 cut(s)	171, 323, 844
HpySE526I	ACGT	2 cut(s)	545, 565
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	4 cut(s)	77, 127, 876, 898
Kzo9I	GATC	6 cut(s)	23, 119, 601, 642, 799, 922
LguI	GCTCTTC	1 cut(s)	366
LmnI	GCTCC	4 cut(s)	83, 629, 688, 848
LweI	GCATC	3 cut(s)	583, 623, 689
MaeI	CTAG	3 cut(s)	506, 900, 915
MaeII	ACGT	2 cut(s)	545, 565
MaeIII	GTNAC	1 cut(s)	810
MalI	GATC	6 cut(s)	25, 121, 603, 644, 801, 924
MboI	GATC	6 cut(s)	23, 119, 601, 642, 799, 922
MboII	GAAGA	4 cut(s)	138, 320, 383, 566
MhlI	GDGCHC	3 cut(s)	739, 869, 909
MlsI	TGGCCA	1 cut(s)	893
MluCI	AATT	3 cut(s)	166, 291, 918
MluNI	TGGCCA	1 cut(s)	893
MlyI	GAGTC	3 cut(s)	143, 182, 286
MmeI	TCCRAC	1 cut(s)	616
Mox20I	TGGCCA	1 cut(s)	893
MscI	TGGCCA	1 cut(s)	893
MseI	TTAA	2 cut(s)	444, 934
MslI	CAYNNNNRTG	1 cut(s)	887
Msp20I	TGGCCA	1 cut(s)	893
MspA1I	CMGCKG	1 cut(s)	179
MspCI	CTTAAG	1 cut(s)	443
MspI	CCGG	1 cut(s)	852
MwoI	GCNNNNNNNGC	1 cut(s)	873
NcoI	CCATGG	2 cut(s)	123, 894
NdeI	CATATG	2 cut(s)	303, 550
NdeII	GATC	6 cut(s)	23, 119, 601, 642, 799, 922
NheI	GCTAGC	1 cut(s)	899
NlaIII	CATG	4 cut(s)	77, 127, 876, 898
NlaIV	GGNNCC	4 cut(s)	79, 216, 757, 850
NmuCI	GTSAC	1 cut(s)	810
NspI	RCATGY	1 cut(s)	876
PceI	AGGCCT	1 cut(s)	501
PciSI	GCTCTTC	1 cut(s)	366
PfeI	GAWTC	5 cut(s)	90, 198, 259, 328, 483
PkrI	GCNGC	1 cut(s)	284
Ple19I	CGATCG	1 cut(s)	26
PleI	GAGTC	3 cut(s)	142, 181, 285
PpsI	GAGTC	3 cut(s)	142, 181, 285
Ppu21I	YACGTR	1 cut(s)	566
PpuMI	RGGWCCY	1 cut(s)	215
Psp5II	RGGWCCY	1 cut(s)	215
PspFI	CCCAGC	1 cut(s)	529
PspN4I	GGNNCC	4 cut(s)	79, 216, 757, 850
PspPI	GGNCC	2 cut(s)	215, 313
PspPPI	RGGWCCY	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	687
PstNI	CAGNNNCTG	1 cut(s)	808
PvuI	CGATCG	1 cut(s)	26
PvuII	CAGCTG	1 cut(s)	179
RsaI	GTAC	1 cut(s)	544
RsaNI	GTAC	1 cut(s)	543
RseI	CAYNNNNRTG	1 cut(s)	887
SapI	GCTCTTC	1 cut(s)	366
SaqAI	TTAA	2 cut(s)	444, 934
SatI	GCNGC	1 cut(s)	283
Sau3AI	GATC	6 cut(s)	23, 119, 601, 642, 799, 922
Sau96I	GGNCC	2 cut(s)	215, 313
SchI	GAGTC	3 cut(s)	143, 182, 286
SduI	GDGCHC	3 cut(s)	739, 869, 909
SfaNI	GCATC	3 cut(s)	583, 623, 689
SfcI	CTRYAG	1 cut(s)	683
SinI	GGWCC	2 cut(s)	215, 313
SmiMI	CAYNNNNRTG	1 cut(s)	887
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
SnaBI	TACGTA	1 cut(s)	566
Sse9I	AATT	3 cut(s)	166, 291, 918
SseBI	AGGCCT	1 cut(s)	501
SsiI	CCGC	4 cut(s)	283, 316, 513, 648
SspI	AATATT	2 cut(s)	271, 707
SspMI	CTAG	3 cut(s)	506, 900, 915
StuI	AGGCCT	1 cut(s)	501
StyI	CCWWGG	2 cut(s)	123, 894
TaaI	ACNGT	2 cut(s)	226, 794
TaiI	ACGT	2 cut(s)	548, 568
TaqI	TCGA	1 cut(s)	22
TasI	AATT	3 cut(s)	166, 291, 918
TauI	GCSGC	1 cut(s)	285
TfiI	GAWTC	5 cut(s)	90, 198, 259, 328, 483
Tru1I	TTAA	2 cut(s)	444, 934
Tru9I	TTAA	2 cut(s)	444, 934
TscAI	CASTG	2 cut(s)	231, 889
TseFI	GTSAC	1 cut(s)	810
Tsp45I	GTSAC	1 cut(s)	810
TspDTI	ATGAA	4 cut(s)	397, 399, 550, 567
TspRI	CASTG	2 cut(s)	231, 889
Vha464I	CTTAAG	1 cut(s)	443
VpaK11BI	GGWCC	2 cut(s)	215, 313
XapI	RAATTY	1 cut(s)	291
XceI	RCATGY	1 cut(s)	876
XspI	CTAG	3 cut(s)	506, 900, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.