Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0004621

Physical Location & Seq

Genomic Coordinates Forward (+)

23779988 .. 23780308

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1149100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGAAGAGGTTCGCAGGTTGTGGATACAACAAAGGATTAAAAGCGCAGAGCTTGGAACGTTAGACCAAGAAAACGAACTTCCTACTTTTCCGTCTTTCATTCCATTTTTGCCTCCCCTGAGTTCAGAAAACCTTAAGCAGTATTATGCAGTCTGTTATTCAATTATTGCCGGATTTATACTTTTCGGTGGCCTCATATCACCCTCTCTGGAGTTGAAGCTGGGGATAGGAGGTACATCATATAAAGATTTTATAGTAAATATGCATCTGCCGTTGCACTTGAGCCAAGTTGATCCCATTGTGGCGTTGTTCTTAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0019216 GO:0019222 GO:0019747 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

107

Amino Acids

11.9

Weight (kDa)

5.19

Isoelectric Point (pI)

53.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61670 AT5G61670
fragaria_vesca	FvH4_7g26730 FvH4_7g26730 FvH4_7g26730
malus_domestica	MD01G1175600.v1.1 MD04G1149100.v1.1 MD07G1241900.v1.1 MD07G1243400.v1.1 MD07G1243800.v1.1 MD07G1243900.v1.1 MD07G1244500.v1.1 MD07G1245000.v1.1 MD07G1245500.v1.1 MD07G1245900.v1.1
prunus_persica	Prupe.2G270800_v2.0.a1
pyrus_communis	pycom01g18650 pycom07g21830 pycom07g21900 pycom07g22020
rosa_chinensis	RchiOBHm_Chr1g0373321
rosa_laevigata	RLG00000026827
rosa_multiflora	Rmu_sc0031228.1_g000001 Rmu_ssc0000435.1_g000006
rosa_roxburghii	Rroxscaffold_4G00284270
rosa_rugosa	Rorug01G0377000
rosa_samantha	Rh1AG386200 Rh1BG350300 Rh1CG363400 Rh1DG381200
rosa_wichuraiana	Rw1G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	6
AclI	AACGTT	1 cut(s)	59
AclWI	GGATC	1 cut(s)	287
AfaI	GTAC	1 cut(s)	235
AflII	CTTAAG	1 cut(s)	134
AgsI	TTSAA	2 cut(s)	162, 217
AluBI	AGCT	2 cut(s)	52, 220
AluI	AGCT	2 cut(s)	52, 220
AlwI	GGATC	1 cut(s)	287
AoxI	GGCC	1 cut(s)	190
Asp700I	GAANNNNTTC	1 cut(s)	9
AspLEI	GCGC	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	192
BceAI	ACGGC	1 cut(s)	256
BciVI	GTATCC	1 cut(s)	18
BfrI	CTTAAG	1 cut(s)	134
BfuAI	ACCTGC	1 cut(s)	6
BfuI	GTATCC	1 cut(s)	18
BmsI	GCATC	1 cut(s)	274
BpmI	CTGGAG	1 cut(s)	230
BpuEI	CTTGAG	1 cut(s)	301
BseMII	CTCAG	1 cut(s)	110
BseYI	CCCAGC	1 cut(s)	220
BshFI	GGCC	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	171
BsnI	GGCC	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	292
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	1 cut(s)	111
BspMI	ACCTGC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	287
BspTI	CTTAAG	1 cut(s)	134
BssMI	GATC	1 cut(s)	292
BstAFI	CTTAAG	1 cut(s)	134
BstDEI	CTNAG	2 cut(s)	119, 313
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	1 cut(s)	295
BstMBI	GATC	1 cut(s)	292
BsuI	GTATCC	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	192
BveI	ACCTGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	234
CviJI	RGCY	4 cut(s)	52, 192, 220, 285
CviKI_1	RGCY	4 cut(s)	52, 192, 220, 285
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	2 cut(s)	119, 313
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
EcoT22I	ATGCAT	1 cut(s)	267
FaiI	YATR	7 cut(s)	147, 179, 197, 241, 243, 254, 263
GlaI	GCGC	1 cut(s)	46
GsaI	CCCAGC	1 cut(s)	224
GsuI	CTGGAG	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	1 cut(s)	171
HhaI	GCGC	1 cut(s)	47
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	1 cut(s)	192
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	1 cut(s)	209
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	3 cut(s)	149, 265, 277
HpyF3I	CTNAG	2 cut(s)	119, 313
HpySE526I	ACGT	1 cut(s)	59
HspAI	GCGC	1 cut(s)	45
Kzo9I	GATC	1 cut(s)	292
LpnPI	CCDG	4 cut(s)	131, 184, 194, 206
LweI	GCATC	1 cut(s)	274
MaeII	ACGT	1 cut(s)	59
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MboII	GAAGA	1 cut(s)	17
MluCI	AATT	1 cut(s)	162
MnlI	CCTC	4 cut(s)	123, 203, 214, 224
Mph1103I	ATGCAT	1 cut(s)	267
MroXI	GAANNNNTTC	1 cut(s)	9
MseI	TTAA	2 cut(s)	39, 135
MspCI	CTTAAG	1 cut(s)	134
MspI	CCGG	1 cut(s)	171
NdeII	GATC	1 cut(s)	292
NsiI	ATGCAT	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	9
Psp1406I	AACGTT	1 cut(s)	59
PspFI	CCCAGC	1 cut(s)	220
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
SaqAI	TTAA	2 cut(s)	39, 135
Sau3AI	GATC	1 cut(s)	292
SetI	ASST	7 cut(s)	12, 20, 54, 62, 135, 222, 235
SfaNI	GCATC	1 cut(s)	274
SgeI	CNNG	9 cut(s)	28, 65, 80, 130, 183, 221, 233, 292, 299
SmlI	CTYRAG	2 cut(s)	134, 280
SmoI	CTYRAG	2 cut(s)	134, 280
Sse9I	AATT	1 cut(s)	162
TaiI	ACGT	1 cut(s)	62
TasI	AATT	1 cut(s)	162
Tru1I	TTAA	2 cut(s)	39, 135
Tru9I	TTAA	2 cut(s)	39, 135
TspDTI	ATGAA	1 cut(s)	88
TspGWI	ACGGA	1 cut(s)	81
Vha464I	CTTAAG	1 cut(s)	134
XmnI	GAANNNNTTC	1 cut(s)	9
Zsp2I	ATGCAT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.