Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004621

Physical Location & Seq

Genomic Coordinates Reverse (-)

31398862 .. 31399369

Gene Structure 508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1243800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTTTCAAGTTGATCCCATAGTGGCGTCATTCTCTGGAGGAGCAGTCGGAGTGATCTCAGCATTGATGGTAGTTGAAATAAACAATGTGAAACAGCAGGAGCATAAACGATGCAAATATTGTCTTGGAACTGGATCTCTTGCTTGTGCTCGTTGCTCCAGCACTGGAACCCTTGTTCTTACTGAACCAGTATCGACAGCTGATGATGGCGGAAACCAACCCCTATCTCTGCCAAAAACTGAACGATGTTCAAATTGCTCAGGAGCGGGAAAGGTTAGACATATAATTGTGTCCGTTGAATGTTTATTGCATACTAAATTCCTTTTAGTGCCTGCCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0019216 GO:0019222 GO:0019747 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

11.83

Weight (kDa)

8.2

Isoelectric Point (pI)

42.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61670 AT5G61670
fragaria_vesca	FvH4_7g26730 FvH4_7g26730 FvH4_7g26730
malus_domestica	MD01G1175600.v1.1 MD04G1149100.v1.1 MD07G1241900.v1.1 MD07G1243400.v1.1 MD07G1243800.v1.1 MD07G1243900.v1.1 MD07G1244500.v1.1 MD07G1245000.v1.1 MD07G1245500.v1.1 MD07G1245900.v1.1
prunus_persica	Prupe.2G270800_v2.0.a1
pyrus_communis	pycom01g18650 pycom07g21830 pycom07g21900 pycom07g22020
rosa_chinensis	RchiOBHm_Chr1g0373321
rosa_laevigata	RLG00000026827
rosa_multiflora	Rmu_sc0031228.1_g000001 Rmu_ssc0000435.1_g000006
rosa_roxburghii	Rroxscaffold_4G00284270
rosa_rugosa	Rorug01G0377000
rosa_samantha	Rh1AG386200 Rh1BG350300 Rh1CG363400 Rh1DG381200
rosa_wichuraiana	Rw1G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	266
AciI	CCGC	3 cut(s)	210, 266, 336
AclWI	GGATC	2 cut(s)	8, 142
AcsI	RAATTY	1 cut(s)	317
AcyI	GRCGYC	1 cut(s)	26
AgsI	TTSAA	4 cut(s)	8, 77, 252, 299
AloI	GAACNNNNNNTCC	2 cut(s)	159, 191
AluBI	AGCT	1 cut(s)	200
AluI	AGCT	1 cut(s)	200
Alw21I	GWGCWC	1 cut(s)	151
AlwI	GGATC	2 cut(s)	8, 142
ApoI	RAATTY	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	151
BccI	CCATC	2 cut(s)	61, 200
BisI	GCNGC	1 cut(s)	336
BlsI	GCNGC	1 cut(s)	337
BmiI	GGNNCC	1 cut(s)	169
BmsI	GCATC	1 cut(s)	101
BpmI	CTGGAG	2 cut(s)	57, 142
Bpu10I	CCTNAGC	1 cut(s)	259
BsaHI	GRCGYC	1 cut(s)	26
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 60
Bse1I	ACTGG	3 cut(s)	136, 169, 188
BseMII	CTCAG	2 cut(s)	72, 273
BseNI	ACTGG	3 cut(s)	136, 169, 188
BseRI	GAGGAG	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	151
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	3 cut(s)	13, 54, 134
BspACI	CCGC	3 cut(s)	210, 266, 336
BspCNI	CTCAG	2 cut(s)	71, 272
BspLI	GGNNCC	1 cut(s)	169
BspPI	GGATC	2 cut(s)	8, 142
BsrBI	CCGCTC	1 cut(s)	266
BsrI	ACTGG	3 cut(s)	136, 169, 188
BssMI	GATC	3 cut(s)	13, 54, 134
BssNI	GRCGYC	1 cut(s)	26
BstACI	GRCGYC	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	3 cut(s)	58, 259, 339
BstKTI	GATC	3 cut(s)	16, 57, 137
BstMBI	GATC	3 cut(s)	13, 54, 134
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	333
CseI	GACGC	1 cut(s)	15
CviJI	RGCY	1 cut(s)	200
CviKI_1	RGCY	1 cut(s)	200
DdeI	CTNAG	3 cut(s)	58, 259, 339
DpnI	GATC	3 cut(s)	15, 56, 136
DpnII	GATC	3 cut(s)	13, 54, 134
EciI	GGCGGA	1 cut(s)	225
FaiI	YATR	5 cut(s)	20, 105, 282, 284, 312
FauI	CCCGC	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	336
Fsp4HI	GCNGC	1 cut(s)	336
GluI	GCNGC	1 cut(s)	336
GsuI	CTGGAG	2 cut(s)	57, 142
HgaI	GACGC	1 cut(s)	15
Hin1I	GRCGYC	1 cut(s)	26
Hpy188I	TCNGA	1 cut(s)	50
Hpy188III	TCNNGA	2 cut(s)	36, 261
HpyCH4V	TGCA	2 cut(s)	114, 310
HpyF3I	CTNAG	3 cut(s)	58, 259, 339
Hsp92I	GRCGYC	1 cut(s)	26
Kzo9I	GATC	3 cut(s)	13, 54, 134
LmnI	GCTCC	4 cut(s)	41, 100, 161, 263
LpnPI	CCDG	7 cut(s)	21, 83, 117, 150, 172, 201, 246
LweI	GCATC	1 cut(s)	101
MalI	GATC	3 cut(s)	15, 56, 136
MbiI	CCGCTC	1 cut(s)	266
MboI	GATC	3 cut(s)	13, 54, 134
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	3 cut(s)	253, 285, 317
MmeI	TCCRAC	1 cut(s)	28
MnlI	CCTC	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	200
NdeII	GATC	3 cut(s)	13, 54, 134
NlaIV	GGNNCC	1 cut(s)	169
PkrI	GCNGC	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	134
PvuII	CAGCTG	1 cut(s)	200
SatI	GCNGC	1 cut(s)	336
Sau3AI	GATC	3 cut(s)	13, 54, 134
SduI	GDGCHC	1 cut(s)	151
SetI	ASST	2 cut(s)	202, 276
SfaNI	GCATC	1 cut(s)	101
Sse9I	AATT	3 cut(s)	253, 285, 317
SsiI	CCGC	3 cut(s)	210, 266, 336
SspI	AATATT	1 cut(s)	119
TaqI	TCGA	1 cut(s)	194
TasI	AATT	3 cut(s)	253, 285, 317
TauI	GCSGC	1 cut(s)	338
TscAI	CASTG	1 cut(s)	169
TspGWI	ACGGA	1 cut(s)	283
TspRI	CASTG	1 cut(s)	169
XapI	RAATTY	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.