Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004621

Physical Location & Seq

Genomic Coordinates Reverse (-)

23401667 .. 23403346

Gene Structure 1680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g21900.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGAGCTGCAGGAAATTCAAGATTATATTCGGAATCGGCGCAACAAAATTTTCTTGCATATGGAGGAGGTTCGCAGGCTGAGGATACAACAGCGGATTAAACGCGCAGAGATTGGAGCGGTAAATGAAGATCAAGAAAACGAACTTCCTAGTTTTCCATCATTCATTCCCTTTTTGCCTCCCCTGAGTTCAGACAACCTTAAGCTGTATTATGCTTTTTGTTATTCAATTATTGCCGGGTTTATCCTTTTTGGCGGCCTCATAGCTCCCTCCTTGGAGTTGAAGTTGGGAATAGGAGGCACATCGTATAAAGATTTTATAGTAAATATGCATCTGCCATTGCAGTTGAGTCAAGTTGATCCCATAGTGGCGTCGTTCTCTGGAGGAGCAGTCGGAGTGATCTCAGCATTGATGGTAGTTGAAATAAACAATGTGAAACAGCAGGAGCATAAGCGATGCAAATATTGTCTTGGAACTGGATATCTTGCTTGTGCTCGTTGCTCCAGCACTGGAACCCTTGTTCTTACCGAACCAGTTTCAACAGTTGATGGCAGAAACCAGCCCCTTTCACTGCCAAAAACTGAAAGATGTTCAAATTGCTCAGGAGCGGGAAAGGTAATGTGCCCGACATGCCTTTGCACGGGAATGGCGATGGCAAGTGAACACGACCTTCGGATCGACCCCTTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0019216 GO:0019222 GO:0019747 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

231

Amino Acids

25.48

Weight (kDa)

6.88

Isoelectric Point (pI)

56.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61670 AT5G61670
fragaria_vesca	FvH4_7g26730 FvH4_7g26730 FvH4_7g26730
malus_domestica	MD01G1175600.v1.1 MD04G1149100.v1.1 MD07G1241900.v1.1 MD07G1243400.v1.1 MD07G1243800.v1.1 MD07G1243900.v1.1 MD07G1244500.v1.1 MD07G1245000.v1.1 MD07G1245500.v1.1 MD07G1245900.v1.1
prunus_persica	Prupe.2G270800_v2.0.a1
pyrus_communis	pycom01g18650 pycom07g21830 pycom07g21900 pycom07g22020
rosa_chinensis	RchiOBHm_Chr1g0373321
rosa_laevigata	RLG00000026827
rosa_multiflora	Rmu_sc0031228.1_g000001 Rmu_ssc0000435.1_g000006
rosa_roxburghii	Rroxscaffold_4G00284270
rosa_rugosa	Rorug01G0377000
rosa_samantha	Rh1AG386200 Rh1BG350300 Rh1CG363400 Rh1DG381200
rosa_wichuraiana	Rw1G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	119, 608
AccII	CGCG	1 cut(s)	105
AciI	CCGC	4 cut(s)	94, 119, 255, 608
AclWI	GGATC	2 cut(s)	353, 683
AcsI	RAATTY	2 cut(s)	15, 48
AcyI	GRCGYC	1 cut(s)	371
AfiI	CCNNNNNNNGG	1 cut(s)	640
AflII	CTTAAG	1 cut(s)	200
AgsI	TTSAA	6 cut(s)	20, 228, 283, 422, 540, 594
AloI	GAACNNNNNNTCC	2 cut(s)	504, 536
AluBI	AGCT	3 cut(s)	7, 205, 266
AluI	AGCT	3 cut(s)	7, 205, 266
Alw21I	GWGCWC	1 cut(s)	496
AlwI	GGATC	2 cut(s)	353, 683
AoxI	GGCC	1 cut(s)	256
ApeKI	GCWGC	1 cut(s)	7
ApoI	RAATTY	2 cut(s)	15, 48
AspLEI	GCGC	2 cut(s)	42, 107
AsuC2I	CCSGG	1 cut(s)	238
BaeGI	GKGCMC	1 cut(s)	626
Bbv12I	GWGCWC	1 cut(s)	496
BbvCI	CCTCAGC	1 cut(s)	80
BccI	CCATC	4 cut(s)	166, 406, 542, 646
BciVI	GTATCC	1 cut(s)	78
BcnI	CCSGG	1 cut(s)	238
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	200
BfuI	GTATCC	1 cut(s)	78
BisI	GCNGC	2 cut(s)	8, 256
BlsI	GCNGC	2 cut(s)	9, 257
Bme1390I	CCNGG	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	514
BmrFI	CCNGG	1 cut(s)	238
BmsI	GCATC	2 cut(s)	340, 446
BpmI	CTGGAG	2 cut(s)	402, 487
Bpu10I	CCTNAGC	2 cut(s)	80, 601
BpuMI	CCSGG	1 cut(s)	238
BsaHI	GRCGYC	1 cut(s)	371
BsaJI	CCNNGG	1 cut(s)	273
BsaXI	ACNNNNNCTCC	4 cut(s)	269, 299, 375, 405
Bsc4I	CCNNNNNNNGG	1 cut(s)	640
Bse1I	ACTGG	3 cut(s)	481, 514, 533
Bse3DI	GCAATG	1 cut(s)	338
BseDI	CCNNGG	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	640
BseMI	GCAATG	1 cut(s)	338
BseMII	CTCAG	4 cut(s)	71, 176, 417, 615
BseNI	ACTGG	3 cut(s)	481, 514, 533
BseRI	GAGGAG	2 cut(s)	80, 399
BseSI	GKGCMC	1 cut(s)	626
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	258
BsiHKAI	GWGCWC	1 cut(s)	496
BsiSI	CCGG	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	640
BsnI	GGCC	1 cut(s)	258
Bsp1286I	GDGCHC	2 cut(s)	496, 626
Bsp143I	GATC	4 cut(s)	130, 358, 399, 675
BspACI	CCGC	4 cut(s)	94, 119, 255, 608
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	4 cut(s)	72, 177, 416, 614
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	514
BspMAI	CTGCAG	1 cut(s)	12
BspPI	GGATC	2 cut(s)	353, 683
BspTI	CTTAAG	1 cut(s)	200
BsrBI	CCGCTC	2 cut(s)	119, 608
BsrDI	GCAATG	1 cut(s)	338
BsrI	ACTGG	3 cut(s)	481, 514, 533
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	4 cut(s)	130, 358, 399, 675
BssNI	GRCGYC	1 cut(s)	371
BssT1I	CCWWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	544
BstACI	GRCGYC	1 cut(s)	371
BstAFI	CTTAAG	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	4 cut(s)	80, 185, 403, 601
BstFNI	CGCG	1 cut(s)	105
BstHHI	GCGC	2 cut(s)	42, 107
BstKTI	GATC	4 cut(s)	133, 361, 402, 678
BstMBI	GATC	4 cut(s)	130, 358, 399, 675
BstMWI	GCNNNNNNNGC	1 cut(s)	630
BstNSI	RCATGY	1 cut(s)	633
BstSCI	CCNGG	1 cut(s)	236
BstSFI	CTRYAG	1 cut(s)	8
BstSLI	GKGCMC	1 cut(s)	626
BstUI	CGCG	1 cut(s)	105
BsuI	GTATCC	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	258
BtgZI	GCGATG	2 cut(s)	469, 665
BtsI	GCAGTG	1 cut(s)	569
BtsIMutI	CAGTG	2 cut(s)	507, 569
Cac8I	GCNNGC	1 cut(s)	77
CfoI	GCGC	2 cut(s)	42, 107
CseI	GACGC	1 cut(s)	360
CviAII	CATG	1 cut(s)	630
CviJI	RGCY	6 cut(s)	7, 79, 205, 258, 266, 562
CviKI_1	RGCY	6 cut(s)	7, 79, 205, 258, 266, 562
DdeI	CTNAG	4 cut(s)	80, 185, 403, 601
DpnI	GATC	4 cut(s)	132, 360, 401, 677
DpnII	GATC	4 cut(s)	130, 358, 399, 675
Eco130I	CCWWGG	1 cut(s)	273
Eco32I	GATATC	1 cut(s)	482
EcoRV	GATATC	1 cut(s)	482
EcoT14I	CCWWGG	1 cut(s)	273
EcoT22I	ATGCAT	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	1 cut(s)	633
FatI	CATG	1 cut(s)	629
FauI	CCCGC	1 cut(s)	601
FauNDI	CATATG	1 cut(s)	60
Fnu4HI	GCNGC	2 cut(s)	8, 256
Fsp4HI	GCNGC	2 cut(s)	8, 256
FspBI	CTAG	1 cut(s)	150
GlaI	GCGC	2 cut(s)	41, 106
GluI	GCNGC	2 cut(s)	8, 256
GsuI	CTGGAG	2 cut(s)	402, 487
HaeIII	GGCC	1 cut(s)	258
HapII	CCGG	1 cut(s)	237
HgaI	GACGC	1 cut(s)	360
HhaI	GCGC	2 cut(s)	42, 107
Hin1I	GRCGYC	1 cut(s)	371
Hin1II	CATG	1 cut(s)	633
Hin6I	GCGC	2 cut(s)	40, 105
HinP1I	GCGC	2 cut(s)	40, 105
HinfI	GANTC	2 cut(s)	34, 349
HpaII	CCGG	1 cut(s)	237
Hpy166II	GTNNAC	1 cut(s)	662
Hpy188I	TCNGA	4 cut(s)	33, 193, 395, 675
Hpy188III	TCNNGA	4 cut(s)	20, 134, 381, 603
Hpy8I	GTNNAC	1 cut(s)	662
Hpy99I	CGWCG	1 cut(s)	376
HpyAV	CCTTC	1 cut(s)	680
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4V	TGCA	6 cut(s)	10, 58, 331, 343, 459, 639
HpyF10VI	GCNNNNNNNGC	1 cut(s)	630
HpyF3I	CTNAG	4 cut(s)	80, 185, 403, 601
Hsp92I	GRCGYC	1 cut(s)	371
Hsp92II	CATG	1 cut(s)	633
HspAI	GCGC	2 cut(s)	40, 105
Kzo9I	GATC	4 cut(s)	130, 358, 399, 675
LmnI	GCTCC	7 cut(s)	4, 116, 271, 386, 445, 506, 605
LweI	GCATC	2 cut(s)	340, 446
MaeI	CTAG	1 cut(s)	150
MalI	GATC	4 cut(s)	132, 360, 401, 677
MbiI	CCGCTC	2 cut(s)	119, 608
MboI	GATC	4 cut(s)	130, 358, 399, 675
MboII	GAAGA	1 cut(s)	140
MhlI	GDGCHC	2 cut(s)	496, 626
MluCI	AATT	4 cut(s)	15, 48, 228, 595
MlyI	GAGTC	1 cut(s)	358
MmeI	TCCRAC	1 cut(s)	373
MnlI	CCTC	8 cut(s)	58, 61, 75, 189, 269, 280, 290, 377
Mph1103I	ATGCAT	1 cut(s)	333
MseI	TTAA	2 cut(s)	99, 201
MslI	CAYNNNNRTG	1 cut(s)	644
MspA1I	CMGCKG	1 cut(s)	94
MspCI	CTTAAG	1 cut(s)	200
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	238
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	630
NciI	CCSGG	1 cut(s)	238
NdeI	CATATG	1 cut(s)	60
NdeII	GATC	4 cut(s)	130, 358, 399, 675
NlaIII	CATG	1 cut(s)	633
NlaIV	GGNNCC	1 cut(s)	514
NsiI	ATGCAT	1 cut(s)	333
NspI	RCATGY	1 cut(s)	633
PcsI	WCGNNNNNNNCGW	1 cut(s)	647
PfeI	GAWTC	1 cut(s)	34
PkrI	GCNGC	2 cut(s)	9, 257
PleI	GAGTC	1 cut(s)	357
PpsI	GAGTC	1 cut(s)	357
PspN4I	GGNNCC	1 cut(s)	514
PstI	CTGCAG	1 cut(s)	12
RseI	CAYNNNNRTG	1 cut(s)	644
SaqAI	TTAA	2 cut(s)	99, 201
SatI	GCNGC	2 cut(s)	8, 256
Sau3AI	GATC	4 cut(s)	130, 358, 399, 675
SchI	GAGTC	1 cut(s)	358
ScrFI	CCNGG	1 cut(s)	238
SduI	GDGCHC	2 cut(s)	496, 626
SetI	ASST	7 cut(s)	9, 72, 201, 207, 268, 618, 672
SfaNI	GCATC	2 cut(s)	340, 446
SfcI	CTRYAG	1 cut(s)	8
SmiMI	CAYNNNNRTG	1 cut(s)	644
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	4 cut(s)	15, 48, 228, 595
SsiI	CCGC	4 cut(s)	94, 119, 255, 608
SspI	AATATT	1 cut(s)	464
SspMI	CTAG	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	236
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	544
TaqI	TCGA	1 cut(s)	678
TasI	AATT	4 cut(s)	15, 48, 228, 595
TauI	GCSGC	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	2 cut(s)	99, 201
Tru9I	TTAA	2 cut(s)	99, 201
TscAI	CASTG	2 cut(s)	514, 576
TseI	GCWGC	1 cut(s)	7
TspDTI	ATGAA	2 cut(s)	141, 154
TspRI	CASTG	2 cut(s)	514, 576
Vha464I	CTTAAG	1 cut(s)	200
XapI	RAATTY	2 cut(s)	15, 48
XceI	RCATGY	1 cut(s)	633
XspI	CTAG	1 cut(s)	150
Zsp2I	ATGCAT	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.