Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004621

Physical Location & Seq

Genomic Coordinates Reverse (-)

31402579 .. 31405026

Gene Structure 2448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1243900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGCTCTGCTCCGGCAGACTTTTGGCCGTTTCTTTCCCCGTAAATCGGTGCCGTCCGTACAAACTGCATAGCGCCGGCTGCTCCAAATTCAGCTACCCAGAAGCCCCATATCAACAAGCAGCTCCAGATGGCGATCCCTTGCCATGGCTTCGGAACCCGACTCCTCCTCTTTCGCTCCGTCTGTCGATTCTGATCCCAATCCCGCCGCTGATACAAACCCCGCCGGAGGGGCCTGAAACAGTGCAGGATTTTGCCACAATGGAGCTGCAGGAAATTCAAGATAATATTCGGAGTCGTCGCAACAAAATTTTCTTGCATATGGAGGAGGTTCGCAGGCTGAGGATACAACAGCGGATTAAACGTGCAGAGCTTGGAGCGGTAAATGAAGATCAAGAAAACGAACTTCCTAGTTTTCCATCGTTCATTCCATTTTTGCCTCCCCTGAGTTCAGACAACCTTAAGCAGTATTATGCTGTTTGTTATTCAATTATTGCGGGGTTTATCCTTTTCGGTGGCCTCATAGCACCCTCCTTGGAGTTGAAGCTGGGAATAGGAGGCACATCATATAAAGACTTTATAGTAAATATGCATCTGCCGTTGCAGTTGAGTCAAGTTGATCCCATAGTGGCGTCGTTCTCTGGAGGAGCAGTTGGAGTGATCTCAGCATTGATGGTAGTTGAAATAAACAATGTGAAACAGCAGGAGCATAAACGATGCAAATACTGTCTTGGAACTGGATATCTTGCTTGTGCTCGTTGCTCCAGCACTGGAACCCTTGTTCTTACTGAACCAGTATCGACAGCTGATGGCGGAAACCAACCCCTATCTCTGCCAAAAACTGAACGATGTTCAAATTGCTCAGGAGCGGGAAAGGTAATGTGCCCGACATGCCTTTGCACTGGAATGGCGATGGCAAGTGAACACGACCCTCGGATCGATCCCTTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0019216 GO:0019222 GO:0019747 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

317

Amino Acids

34.65

Weight (kDa)

6.93

Isoelectric Point (pI)

56.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61670 AT5G61670
fragaria_vesca	FvH4_7g26730 FvH4_7g26730 FvH4_7g26730
malus_domestica	MD01G1175600.v1.1 MD04G1149100.v1.1 MD07G1241900.v1.1 MD07G1243400.v1.1 MD07G1243800.v1.1 MD07G1243900.v1.1 MD07G1244500.v1.1 MD07G1245000.v1.1 MD07G1245500.v1.1 MD07G1245900.v1.1
prunus_persica	Prupe.2G270800_v2.0.a1
pyrus_communis	pycom01g18650 pycom07g21830 pycom07g21900 pycom07g22020
rosa_chinensis	RchiOBHm_Chr1g0373321
rosa_laevigata	RLG00000026827
rosa_multiflora	Rmu_sc0031228.1_g000001 Rmu_ssc0000435.1_g000006
rosa_roxburghii	Rroxscaffold_4G00284270
rosa_rugosa	Rorug01G0377000
rosa_samantha	Rh1AG386200 Rh1BG350300 Rh1CG363400 Rh1DG381200
rosa_wichuraiana	Rw1G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	48
AccBSI	CCGCTC	2 cut(s)	377, 866
AciI	CCGC	8 cut(s)	203, 206, 221, 352, 377, 494, 810, 866
AclWI	GGATC	5 cut(s)	128, 187, 611, 932, 941
AcoI	YGGCCR	1 cut(s)	24
AcsI	RAATTY	3 cut(s)	86, 273, 306
AcyI	GRCGYC	1 cut(s)	629
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	4 cut(s)	45, 144, 226, 227
AflII	CTTAAG	1 cut(s)	458
AgsI	TTSAA	5 cut(s)	278, 486, 541, 680, 852
AloI	GAACNNNNNNTCC	2 cut(s)	762, 794
AluBI	AGCT	6 cut(s)	93, 122, 265, 370, 544, 803
AluI	AGCT	6 cut(s)	93, 122, 265, 370, 544, 803
Alw21I	GWGCWC	1 cut(s)	754
AlwI	GGATC	5 cut(s)	128, 187, 611, 932, 941
AoxI	GGCC	3 cut(s)	24, 230, 514
ApeKI	GCWGC	3 cut(s)	78, 119, 265
ApoI	RAATTY	3 cut(s)	86, 273, 306
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	230
BaeGI	GKGCMC	1 cut(s)	884
BanI	GGYRCC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	754
BbvCI	CCTCAGC	1 cut(s)	338
BbvI	GCAGC	3 cut(s)	65, 131, 252
BccI	CCATC	5 cut(s)	122, 424, 664, 800, 904
BceAI	ACGGC	3 cut(s)	11, 36, 580
BciVI	GTATCC	1 cut(s)	336
BfaI	CTAG	1 cut(s)	408
BfmI	CTRYAG	1 cut(s)	266
BfoI	RGCGCY	1 cut(s)	75
BfrI	CTTAAG	1 cut(s)	458
BfuI	GTATCC	1 cut(s)	336
BglI	GCCNNNNNGGC	1 cut(s)	229
BisI	GCNGC	4 cut(s)	79, 120, 206, 266
BlsI	GCNGC	4 cut(s)	80, 121, 207, 267
BmgT120I	GGNCC	1 cut(s)	230
BmiI	GGNNCC	4 cut(s)	50, 155, 231, 772
BmsI	GCATC	2 cut(s)	598, 704
BpmI	CTGGAG	3 cut(s)	108, 660, 745
Bpu10I	CCTNAGC	2 cut(s)	338, 859
Bsa29I	ATCGAT	1 cut(s)	936
BsaBI	GATNNNNATC	3 cut(s)	132, 191, 197
BsaHI	GRCGYC	1 cut(s)	629
BsaJI	CCNNGG	3 cut(s)	143, 531, 929
BsaXI	ACNNNNNCTCC	2 cut(s)	633, 663
Bsc4I	CCNNNNNNNGG	4 cut(s)	45, 144, 226, 227
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	4 cut(s)	739, 772, 791, 904
Bse8I	GATNNNNATC	3 cut(s)	132, 191, 197
BseCI	ATCGAT	1 cut(s)	936
BseDI	CCNNGG	3 cut(s)	143, 531, 929
BseJI	GATNNNNATC	3 cut(s)	132, 191, 197
BseLI	CCNNNNNNNGG	4 cut(s)	45, 144, 226, 227
BseMII	CTCAG	4 cut(s)	329, 434, 675, 873
BseNI	ACTGG	4 cut(s)	739, 772, 791, 904
BseRI	GAGGAG	4 cut(s)	153, 156, 338, 657
BseSI	GKGCMC	1 cut(s)	884
BseXI	GCAGC	3 cut(s)	65, 131, 252
BseYI	CCCAGC	1 cut(s)	544
BsgI	GTGCAG	2 cut(s)	263, 384
BshFI	GGCC	3 cut(s)	26, 232, 516
BshNI	GGYRCC	1 cut(s)	48
BshVI	ATCGAT	1 cut(s)	936
BsiHKAI	GWGCWC	1 cut(s)	754
BsiSI	CCGG	3 cut(s)	12, 75, 224
BslI	CCNNNNNNNGG	4 cut(s)	45, 144, 226, 227
BsnI	GGCC	3 cut(s)	26, 232, 516
Bsp1286I	GDGCHC	2 cut(s)	754, 884
Bsp143I	GATC	7 cut(s)	133, 192, 388, 616, 657, 933, 937
Bsp19I	CCATGG	1 cut(s)	143
BspACI	CCGC	8 cut(s)	203, 206, 221, 352, 377, 494, 810, 866
BspANI	GGCC	3 cut(s)	26, 232, 516
BspCNI	CTCAG	4 cut(s)	330, 435, 674, 872
BspDI	ATCGAT	1 cut(s)	936
BspLI	GGNNCC	4 cut(s)	50, 155, 231, 772
BspMAI	CTGCAG	1 cut(s)	270
BspPI	GGATC	5 cut(s)	128, 187, 611, 932, 941
BspT107I	GGYRCC	1 cut(s)	48
BspTI	CTTAAG	1 cut(s)	458
BsrBI	CCGCTC	2 cut(s)	377, 866
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	4 cut(s)	739, 772, 791, 904
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	3 cut(s)	143, 531, 929
BssMI	GATC	7 cut(s)	133, 192, 388, 616, 657, 933, 937
BssNI	GRCGYC	1 cut(s)	629
BssT1I	CCWWGG	2 cut(s)	143, 531
Bst4CI	ACNGT	2 cut(s)	241, 725
BstACI	GRCGYC	1 cut(s)	629
BstAFI	CTTAAG	1 cut(s)	458
BstC8I	GCNNGC	2 cut(s)	76, 335
BstDEI	CTNAG	4 cut(s)	338, 443, 661, 859
BstDSI	CCRYGG	1 cut(s)	143
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	7 cut(s)	136, 195, 391, 619, 660, 936, 940
BstMBI	GATC	7 cut(s)	133, 192, 388, 616, 657, 933, 937
BstMWI	GCNNNNNNNGC	3 cut(s)	78, 229, 888
BstNSI	RCATGY	1 cut(s)	891
BstSFI	CTRYAG	1 cut(s)	266
BstSLI	GKGCMC	1 cut(s)	884
BstV1I	GCAGC	3 cut(s)	65, 131, 252
Bsu15I	ATCGAT	1 cut(s)	936
BsuI	GTATCC	1 cut(s)	336
BsuRI	GGCC	3 cut(s)	26, 232, 516
BsuTUI	ATCGAT	1 cut(s)	936
BtgI	CCRYGG	1 cut(s)	143
BtgZI	GCGATG	1 cut(s)	923
BtsIMutI	CAGTG	3 cut(s)	246, 765, 897
Cac8I	GCNNGC	2 cut(s)	76, 335
CfoI	GCGC	1 cut(s)	74
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	230
ClaI	ATCGAT	1 cut(s)	936
CseI	GACGC	1 cut(s)	618
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	2 cut(s)	144, 888
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	4 cut(s)	338, 443, 661, 859
DpnI	GATC	7 cut(s)	135, 194, 390, 618, 659, 935, 939
DpnII	GATC	7 cut(s)	133, 192, 388, 616, 657, 933, 937
EaeI	YGGCCR	1 cut(s)	24
EciI	GGCGGA	1 cut(s)	825
Eco130I	CCWWGG	2 cut(s)	143, 531
Eco32I	GATATC	1 cut(s)	740
EcoO109I	RGGNCCY	1 cut(s)	230
EcoRV	GATATC	1 cut(s)	740
EcoT14I	CCWWGG	2 cut(s)	143, 531
EcoT22I	ATGCAT	1 cut(s)	591
ErhI	CCWWGG	2 cut(s)	143, 531
FaeI	CATG	2 cut(s)	147, 891
FatI	CATG	2 cut(s)	143, 887
FauI	CCCGC	4 cut(s)	210, 228, 487, 859
FauNDI	CATATG	1 cut(s)	318
Fnu4HI	GCNGC	4 cut(s)	79, 120, 206, 266
Fsp4HI	GCNGC	4 cut(s)	79, 120, 206, 266
FspBI	CTAG	1 cut(s)	408
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	4 cut(s)	79, 120, 206, 266
GsaI	CCCAGC	1 cut(s)	548
GsuI	CTGGAG	3 cut(s)	108, 660, 745
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	3 cut(s)	26, 232, 516
HapII	CCGG	3 cut(s)	12, 75, 224
HgaI	GACGC	1 cut(s)	618
HhaI	GCGC	1 cut(s)	74
Hin1I	GRCGYC	1 cut(s)	629
Hin1II	CATG	2 cut(s)	147, 891
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HinfI	GANTC	4 cut(s)	160, 187, 292, 607
HpaII	CCGG	3 cut(s)	12, 75, 224
Hpy166II	GTNNAC	1 cut(s)	920
Hpy188I	TCNGA	5 cut(s)	153, 192, 291, 451, 933
Hpy188III	TCNNGA	5 cut(s)	125, 278, 392, 639, 861
Hpy8I	GTNNAC	1 cut(s)	920
Hpy99I	CGWCG	2 cut(s)	300, 634
HpyCH4III	ACNGT	2 cut(s)	241, 725
HpyCH4IV	ACGT	1 cut(s)	361
HpyCH4V	TGCA	9 cut(s)	67, 244, 268, 316, 365, 589, 601, 717, 897
HpyF10VI	GCNNNNNNNGC	3 cut(s)	78, 229, 888
HpyF3I	CTNAG	4 cut(s)	338, 443, 661, 859
HpySE526I	ACGT	1 cut(s)	361
Hsp92I	GRCGYC	1 cut(s)	629
Hsp92II	CATG	2 cut(s)	147, 891
HspAI	GCGC	1 cut(s)	72
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
Kzo9I	GATC	7 cut(s)	133, 192, 388, 616, 657, 933, 937
Lsp1109I	GCAGC	3 cut(s)	65, 131, 252
LweI	GCATC	2 cut(s)	598, 704
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	1 cut(s)	361
MalI	GATC	7 cut(s)	135, 194, 390, 618, 659, 935, 939
MbiI	CCGCTC	2 cut(s)	377, 866
MboI	GATC	7 cut(s)	133, 192, 388, 616, 657, 933, 937
MboII	GAAGA	1 cut(s)	398
MhlI	GDGCHC	2 cut(s)	754, 884
MluCI	AATT	5 cut(s)	86, 273, 306, 486, 853
MlyI	GAGTC	3 cut(s)	154, 301, 616
MmeI	TCCRAC	1 cut(s)	631
Mph1103I	ATGCAT	1 cut(s)	591
MroNI	GCCGGC	1 cut(s)	74
MseI	TTAA	2 cut(s)	357, 459
MslI	CAYNNNNRTG	1 cut(s)	902
MspA1I	CMGCKG	3 cut(s)	208, 352, 803
MspCI	CTTAAG	1 cut(s)	458
MspI	CCGG	3 cut(s)	12, 75, 224
MwoI	GCNNNNNNNGC	3 cut(s)	78, 229, 888
NaeI	GCCGGC	1 cut(s)	76
NcoI	CCATGG	1 cut(s)	143
NdeI	CATATG	1 cut(s)	318
NdeII	GATC	7 cut(s)	133, 192, 388, 616, 657, 933, 937
NgoMIV	GCCGGC	1 cut(s)	74
NlaIII	CATG	2 cut(s)	147, 891
NlaIV	GGNNCC	4 cut(s)	50, 155, 231, 772
NsiI	ATGCAT	1 cut(s)	591
NspI	RCATGY	1 cut(s)	891
PdiI	GCCGGC	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	187
PkrI	GCNGC	4 cut(s)	80, 121, 207, 267
PleI	GAGTC	3 cut(s)	154, 300, 615
PpsI	GAGTC	3 cut(s)	154, 300, 615
PspFI	CCCAGC	1 cut(s)	544
PspN4I	GGNNCC	4 cut(s)	50, 155, 231, 772
PspPI	GGNCC	1 cut(s)	230
PstI	CTGCAG	1 cut(s)	270
PvuII	CAGCTG	1 cut(s)	803
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	902
SaqAI	TTAA	2 cut(s)	357, 459
SatI	GCNGC	4 cut(s)	79, 120, 206, 266
Sau3AI	GATC	7 cut(s)	133, 192, 388, 616, 657, 933, 937
Sau96I	GGNCC	1 cut(s)	230
SchI	GAGTC	3 cut(s)	154, 301, 616
SduI	GDGCHC	2 cut(s)	754, 884
SfaNI	GCATC	2 cut(s)	598, 704
SfcI	CTRYAG	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	902
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	5 cut(s)	86, 273, 306, 486, 853
SsiI	CCGC	8 cut(s)	203, 206, 221, 352, 377, 494, 810, 866
SspI	AATATT	1 cut(s)	286
SspMI	CTAG	1 cut(s)	408
StyI	CCWWGG	2 cut(s)	143, 531
TaaI	ACNGT	2 cut(s)	241, 725
TaiI	ACGT	1 cut(s)	364
TaqI	TCGA	3 cut(s)	185, 797, 936
TasI	AATT	5 cut(s)	86, 273, 306, 486, 853
TauI	GCSGC	1 cut(s)	208
TfiI	GAWTC	1 cut(s)	187
Tru1I	TTAA	2 cut(s)	357, 459
Tru9I	TTAA	2 cut(s)	357, 459
TscAI	CASTG	3 cut(s)	246, 772, 904
TseI	GCWGC	3 cut(s)	78, 119, 265
TspDTI	ATGAA	2 cut(s)	399, 412
TspGWI	ACGGA	2 cut(s)	45, 167
TspRI	CASTG	3 cut(s)	246, 772, 904
Vha464I	CTTAAG	1 cut(s)	458
XapI	RAATTY	3 cut(s)	86, 273, 306
XceI	RCATGY	1 cut(s)	891
XspI	CTAG	1 cut(s)	408
Zsp2I	ATGCAT	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.