Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004621

Physical Location & Seq

Genomic Coordinates Forward (+)

6318398 .. 6321928

Gene Structure 3531 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026827

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGCTCTCGCTCTCTTTGGGTCGATTGGTTGCGGTCTCACCTATAATAAATCGCTATGGATCGTATAGTTTGCATAGCTACAGCTCCAGGTTCAACCAGAAATCAAGCTTCAGTTTGCGATCGATGGCGTCCGAGTCTGACCCTTCTTCTTTTGCTCAATCTGTGGATTCTGATTCAGCTGAAACAAACCCTGCTGGATTCTGTATTATAGAGGGGCCAGAAACAGTGCAAGACTTTGCGAAAATGGAACTGCAAGAGATTCAGGATAATATTCGGAGTCGTCGCAACAAAATTTTCTTGCATATGGAAGAGGTTCGCAGGCTGAGGATACAACAGAGGATTAAAAACACGTCAGCAAACCTTAAGCAGTATTATGCTGTTTGTTTTTCTCTTATTGCGGGAATCATCCTTTTCGGTGGCCTCCTAGCACCCACTTTAGAGTTGAGGCTGGGAATAGGAGGCACATCATATGAAGACTTCATAAGTAGTATGCATCTGCCTATGCAGTTGAGTGAAGTTGATCCCATAGTTGCATCCTTCTCGGGAGGAGCAGTTGGAGTGATCTCCTCACTGATGGTAGTTGAAATAAACAATGTAAAACTGCAGGAGGATAAGAGATGCAAATATTGTCTTGGAACTGGATATCTTGCTTGTGCTCGGTGTTCAAGCACAGGAACCCTCGTGCTTGCTGAAGCAGTATCAACCATTGATGGTGGAGAACAGCCTTTATCACTACCTAAAACCGAAAGATGTTCAAACTGCTCAGGATCCGGAAAGGTTATGTGCCCTACATGCCTTTGCACTGGGATGGCCATGGCAAGCGAGCACGACCCTCGAATTGATCCCTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0019216 GO:0019222 GO:0019747 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

285

Amino Acids

30.91

Weight (kDa)

5.87

Isoelectric Point (pI)

56.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61670 AT5G61670
fragaria_vesca	FvH4_7g26730 FvH4_7g26730 FvH4_7g26730
malus_domestica	MD01G1175600.v1.1 MD04G1149100.v1.1 MD07G1241900.v1.1 MD07G1243400.v1.1 MD07G1243800.v1.1 MD07G1243900.v1.1 MD07G1244500.v1.1 MD07G1245000.v1.1 MD07G1245500.v1.1 MD07G1245900.v1.1
prunus_persica	Prupe.2G270800_v2.0.a1
pyrus_communis	pycom01g18650 pycom07g21830 pycom07g21900 pycom07g22020
rosa_chinensis	RchiOBHm_Chr1g0373321
rosa_laevigata	RLG00000026827
rosa_multiflora	Rmu_sc0031228.1_g000001 Rmu_ssc0000435.1_g000006
rosa_roxburghii	Rroxscaffold_4G00284270
rosa_rugosa	Rorug01G0377000
rosa_samantha	Rh1AG386200 Rh1BG350300 Rh1CG363400 Rh1DG381200
rosa_wichuraiana	Rw1G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	770
AciI	CCGC	2 cut(s)	32, 398
AclWI	GGATC	5 cut(s)	67, 515, 762, 775, 836
AcoI	YGGCCR	1 cut(s)	810
AcsI	RAATTY	1 cut(s)	291
AcuI	CTGAAG	2 cut(s)	94, 711
AcyI	GRCGYC	1 cut(s)	128
AflII	CTTAAG	1 cut(s)	362
AflIII	ACRYGT	1 cut(s)	348
AgsI	TTSAA	4 cut(s)	94, 584, 666, 756
AjiI	CACGTC	1 cut(s)	351
AjnI	CCWGG	1 cut(s)	86
AluBI	AGCT	4 cut(s)	78, 84, 108, 179
AluI	AGCT	4 cut(s)	78, 84, 108, 179
Alw21I	GWGCWC	2 cut(s)	658, 828
Alw26I	GTCTC	1 cut(s)	40
AlwI	GGATC	5 cut(s)	67, 515, 762, 775, 836
Ama87I	CYCGRG	1 cut(s)	541
Aor13HI	TCCGGA	1 cut(s)	770
AoxI	GGCC	3 cut(s)	215, 418, 810
ApoI	RAATTY	1 cut(s)	291
Asp700I	GAANNNNTTC	1 cut(s)	312
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	30
AvaI	CYCGRG	1 cut(s)	541
BaeGI	GKGCMC	1 cut(s)	788
BalI	TGGCCA	1 cut(s)	812
BamHI	GGATCC	1 cut(s)	767
BauI	CACGAG	1 cut(s)	680
BbsI	GAAGAC	1 cut(s)	480
Bbv12I	GWGCWC	2 cut(s)	658, 828
BbvCI	CCTCAGC	1 cut(s)	323
BccI	CCATC	4 cut(s)	118, 568, 704, 802
BcgI	CGANNNNNNTGC	4 cut(s)	522, 556, 815, 849
BciT130I	CCWGG	1 cut(s)	88
BciVI	GTATCC	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	40
BfaI	CTAG	1 cut(s)	425
BfmI	CTRYAG	2 cut(s)	79, 602
BfrI	CTTAAG	1 cut(s)	362
BfuI	GTATCC	1 cut(s)	321
Bme1390I	CCNGG	1 cut(s)	88
BmeT110I	CYCGRG	1 cut(s)	541
BmgBI	CACGTC	1 cut(s)	351
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	3 cut(s)	216, 676, 769
BmrFI	CCNGG	1 cut(s)	88
BmrI	ACTGGG	1 cut(s)	813
BmsI	GCATC	3 cut(s)	502, 542, 608
BmuI	ACTGGG	1 cut(s)	813
BpiI	GAAGAC	1 cut(s)	480
BpmI	CTGGAG	1 cut(s)	70
Bpu10I	CCTNAGC	2 cut(s)	323, 763
Bsa29I	ATCGAT	1 cut(s)	122
BsaHI	GRCGYC	1 cut(s)	128
BsaI	GGTCTC	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	813
BsaWI	WCCGGW	1 cut(s)	770
BsaXI	ACNNNNNCTCC	2 cut(s)	537, 567
Bse1I	ACTGG	2 cut(s)	643, 808
BseAI	TCCGGA	1 cut(s)	770
BseBI	CCWGG	1 cut(s)	88
BseCI	ATCGAT	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	813
BseGI	GGATG	3 cut(s)	405, 533, 813
BseMII	CTCAG	2 cut(s)	314, 777
BseNI	ACTGG	2 cut(s)	643, 808
BseRI	GAGGAG	2 cut(s)	556, 561
BseSI	GKGCMC	1 cut(s)	788
BseYI	CCCAGC	1 cut(s)	448
Bsh1285I	CGRYCG	1 cut(s)	122
BshFI	GGCC	3 cut(s)	217, 420, 812
BshVI	ATCGAT	1 cut(s)	122
BsiEI	CGRYCG	1 cut(s)	122
BsiHKAI	GWGCWC	2 cut(s)	658, 828
BsiHKCI	CYCGRG	1 cut(s)	541
BsiSI	CCGG	1 cut(s)	771
BsmAI	GTCTC	1 cut(s)	40
BsnI	GGCC	3 cut(s)	217, 420, 812
Bso31I	GGTCTC	1 cut(s)	40
BsoBI	CYCGRG	1 cut(s)	541
Bsp1286I	GDGCHC	3 cut(s)	658, 788, 828
Bsp13I	TCCGGA	1 cut(s)	770
Bsp143I	GATC	6 cut(s)	59, 119, 520, 561, 767, 841
Bsp19I	CCATGG	1 cut(s)	813
BspACI	CCGC	2 cut(s)	32, 398
BspANI	GGCC	3 cut(s)	217, 420, 812
BspCNI	CTCAG	2 cut(s)	315, 776
BspDI	ATCGAT	1 cut(s)	122
BspEI	TCCGGA	1 cut(s)	770
BspLI	GGNNCC	3 cut(s)	216, 676, 769
BspMAI	CTGCAG	1 cut(s)	606
BspPI	GGATC	5 cut(s)	67, 515, 762, 775, 836
BspTI	CTTAAG	1 cut(s)	362
BspTNI	GGTCTC	1 cut(s)	40
BsrI	ACTGG	2 cut(s)	643, 808
BssECI	CCNNGG	1 cut(s)	813
BssMI	GATC	6 cut(s)	59, 119, 520, 561, 767, 841
BssNI	GRCGYC	1 cut(s)	128
BssSI	CACGAG	1 cut(s)	680
BssT1I	CCWWGG	1 cut(s)	813
Bst2BI	CACGAG	1 cut(s)	680
Bst2UI	CCWGG	1 cut(s)	88
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	303
BstACI	GRCGYC	1 cut(s)	128
BstAFI	CTTAAG	1 cut(s)	362
BstC8I	GCNNGC	4 cut(s)	320, 687, 820, 824
BstDEI	CTNAG	2 cut(s)	323, 763
BstDSI	CCRYGG	1 cut(s)	813
BstF5I	GGATG	3 cut(s)	405, 533, 813
BstKTI	GATC	6 cut(s)	62, 122, 523, 564, 770, 844
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	6 cut(s)	59, 119, 520, 561, 767, 841
BstMCI	CGRYCG	1 cut(s)	122
BstMWI	GCNNNNNNNGC	1 cut(s)	792
BstNI	CCWGG	1 cut(s)	88
BstNSI	RCATGY	1 cut(s)	795
BstSCI	CCNGG	1 cut(s)	86
BstSFI	CTRYAG	2 cut(s)	79, 602
BstSLI	GKGCMC	1 cut(s)	788
BstV2I	GAAGAC	1 cut(s)	480
BstX2I	RGATCY	1 cut(s)	767
BstYI	RGATCY	1 cut(s)	767
Bsu15I	ATCGAT	1 cut(s)	122
BsuI	GTATCC	1 cut(s)	321
BsuRI	GGCC	3 cut(s)	217, 420, 812
BsuTUI	ATCGAT	1 cut(s)	122
BtgI	CCRYGG	1 cut(s)	813
BtrI	CACGTC	1 cut(s)	351
BtsCI	GGATG	3 cut(s)	405, 533, 813
BtsIMutI	CAGTG	3 cut(s)	231, 569, 801
Cac8I	GCNNGC	4 cut(s)	320, 687, 820, 824
Cfr13I	GGNCC	1 cut(s)	215
ClaI	ATCGAT	1 cut(s)	122
CseI	GACGC	1 cut(s)	117
CviAII	CATG	2 cut(s)	792, 814
DdeI	CTNAG	2 cut(s)	323, 763
DpnI	GATC	6 cut(s)	61, 121, 522, 563, 769, 843
DpnII	GATC	6 cut(s)	59, 119, 520, 561, 767, 841
EaeI	YGGCCR	1 cut(s)	810
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco130I	CCWWGG	1 cut(s)	813
Eco31I	GGTCTC	1 cut(s)	40
Eco32I	GATATC	1 cut(s)	644
Eco57I	CTGAAG	2 cut(s)	94, 711
Eco88I	CYCGRG	1 cut(s)	541
EcoRII	CCWGG	1 cut(s)	86
EcoRV	GATATC	1 cut(s)	644
EcoT14I	CCWWGG	1 cut(s)	813
EcoT22I	ATGCAT	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	813
FaeI	CATG	2 cut(s)	795, 817
FatI	CATG	2 cut(s)	791, 813
FauI	CCCGC	1 cut(s)	391
FauNDI	CATATG	2 cut(s)	303, 469
FokI	GGATG	3 cut(s)	392, 520, 820
FspBI	CTAG	1 cut(s)	425
GsaI	CCCAGC	1 cut(s)	452
GsuI	CTGGAG	1 cut(s)	70
HaeIII	GGCC	3 cut(s)	217, 420, 812
HapII	CCGG	1 cut(s)	771
HgaI	GACGC	1 cut(s)	117
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	2 cut(s)	795, 817
HindIII	AAGCTT	1 cut(s)	106
HinfI	GANTC	7 cut(s)	134, 167, 173, 198, 259, 277, 402
HpaII	CCGG	1 cut(s)	771
HphI	GGTGA	1 cut(s)	30
Hpy188I	TCNGA	4 cut(s)	133, 139, 172, 276
Hpy188III	TCNNGA	4 cut(s)	263, 543, 765, 771
Hpy99I	CGWCG	1 cut(s)	285
HpyAV	CCTTC	2 cut(s)	153, 547
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	792
HpyF3I	CTNAG	2 cut(s)	323, 763
HpySE526I	ACGT	1 cut(s)	350
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	2 cut(s)	795, 817
Kpn2I	TCCGGA	1 cut(s)	770
Kzo9I	GATC	6 cut(s)	59, 119, 520, 561, 767, 841
LmnI	GCTCC	2 cut(s)	89, 548
LweI	GCATC	3 cut(s)	502, 542, 608
MaeI	CTAG	1 cut(s)	425
MaeII	ACGT	1 cut(s)	350
MalI	GATC	6 cut(s)	61, 121, 522, 563, 769, 843
MboI	GATC	6 cut(s)	59, 119, 520, 561, 767, 841
MboII	GAAGA	3 cut(s)	138, 320, 485
MflI	RGATCY	1 cut(s)	767
MhlI	GDGCHC	3 cut(s)	658, 788, 828
MlsI	TGGCCA	1 cut(s)	812
MluCI	AATT	2 cut(s)	291, 837
MluNI	TGGCCA	1 cut(s)	812
MlyI	GAGTC	2 cut(s)	143, 286
MmeI	TCCRAC	1 cut(s)	535
Mox20I	TGGCCA	1 cut(s)	812
Mph1103I	ATGCAT	1 cut(s)	495
MroI	TCCGGA	1 cut(s)	770
MroXI	GAANNNNTTC	1 cut(s)	312
MscI	TGGCCA	1 cut(s)	812
MseI	TTAA	3 cut(s)	342, 363, 853
MslI	CAYNNNNRTG	1 cut(s)	806
Msp20I	TGGCCA	1 cut(s)	812
MspA1I	CMGCKG	1 cut(s)	179
MspCI	CTTAAG	1 cut(s)	362
MspI	CCGG	1 cut(s)	771
MspR9I	CCNGG	1 cut(s)	88
MvaI	CCWGG	1 cut(s)	88
MwoI	GCNNNNNNNGC	1 cut(s)	792
NcoI	CCATGG	1 cut(s)	813
NdeI	CATATG	2 cut(s)	303, 469
NdeII	GATC	6 cut(s)	59, 119, 520, 561, 767, 841
NlaIII	CATG	2 cut(s)	795, 817
NlaIV	GGNNCC	3 cut(s)	216, 676, 769
NsiI	ATGCAT	1 cut(s)	495
NspI	RCATGY	1 cut(s)	795
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	5 cut(s)	167, 173, 198, 259, 402
Ple19I	CGATCG	1 cut(s)	122
PleI	GAGTC	2 cut(s)	142, 285
PpsI	GAGTC	2 cut(s)	142, 285
Psp6I	CCWGG	1 cut(s)	86
PspFI	CCCAGC	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	86
PspN4I	GGNNCC	3 cut(s)	216, 676, 769
PspPI	GGNCC	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	606
PsuI	RGATCY	1 cut(s)	767
PvuI	CGATCG	1 cut(s)	122
PvuII	CAGCTG	1 cut(s)	179
RseI	CAYNNNNRTG	1 cut(s)	806
SaqAI	TTAA	3 cut(s)	342, 363, 853
Sau3AI	GATC	6 cut(s)	59, 119, 520, 561, 767, 841
Sau96I	GGNCC	1 cut(s)	215
SchI	GAGTC	2 cut(s)	143, 286
ScrFI	CCNGG	1 cut(s)	88
SduI	GDGCHC	3 cut(s)	658, 788, 828
SfaNI	GCATC	3 cut(s)	502, 542, 608
SfcI	CTRYAG	2 cut(s)	79, 602
SmiMI	CAYNNNNRTG	1 cut(s)	806
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	2 cut(s)	291, 837
SsiI	CCGC	2 cut(s)	32, 398
SspI	AATATT	2 cut(s)	271, 626
SspMI	CTAG	1 cut(s)	425
StyD4I	CCNGG	1 cut(s)	86
StyI	CCWWGG	1 cut(s)	813
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	1 cut(s)	353
TaqI	TCGA	3 cut(s)	22, 122, 835
TasI	AATT	2 cut(s)	291, 837
TfiI	GAWTC	5 cut(s)	167, 173, 198, 259, 402
Tru1I	TTAA	3 cut(s)	342, 363, 853
Tru9I	TTAA	3 cut(s)	342, 363, 853
TscAI	CASTG	3 cut(s)	231, 576, 808
TspDTI	ATGAA	2 cut(s)	469, 486
TspRI	CASTG	3 cut(s)	231, 576, 808
Vha464I	CTTAAG	1 cut(s)	362
XapI	RAATTY	1 cut(s)	291
XceI	RCATGY	1 cut(s)	795
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	1 cut(s)	425
Zsp2I	ATGCAT	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.