Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004621

Physical Location & Seq

Genomic Coordinates Reverse (-)

48323022 .. 48327032

Gene Structure 4011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG350300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGCTCTCGCTCTCTTTGGGTCGATTGGTTGCGGTTTCACCTATAATAAATCGCTATGGATCGTATAGTTTGCATAGCTACAGCTCCAGATTTAACCTGAAATCAAGCTTCAGATTGCGATCGATGGCGTCCGAGTCTGACCCTTCTTCTTTTGCTCAATCTGTGGATTCTGATTCAGCTGAAACAAACCCTGCTGGATTCTGTATTATAGAGGGGCCGGAAACAGTGCAAGACTTTGCCAAAATGGAACTGCAAGAGATTCAGGATAATATTCGGAGTCGTCGCAACAAAATTTTCTTGCATATGGAAGAGGTTCGCAGGCTGAGGATACAACAGAGGATTAAAAACGCAGAGCTCGGGATGTCAAGTGAAGAGCAAGAAAATGAACTTCCGAACTTTCCATCATTCATTCCATTCTTGCCTCCCTTGACTTCAGCAAACCTTAGGCAGTATTATGCTGTTTGTTTTTCTCTTATTGCGGGAATCATCCTTTTCGGTGGCCTCCTAGCACCCACTTTAGAGTTGAGGCTGGGAATAGGAGGCACATCATATGAAGACTTCATAAGTAGTGTGCATCTGCCTATGCAGTTGAGTGAAGTTGATCCCATAGTTGCATCCTTCTCGGGAGGAGCAGTTGGAGTGATCTCCGCACTGATGGTAGTTGAAATAAACAATGTAAAACTGCAGGAGGATAAGAGATGCAAATATTGTCTTGGAACTGGATATCTTGCTTGTGCTCGGTGTTCAAGCACAGGAACCCTCGTGCTTGCTGAAGCAGTATCAACCATTGATGGTGGAGAACAGCCTTTATCACTACCTAAAACCGAAAGATGTTCAAACTGCTCAGGATCCGGAAAGGTTATGTGCCCTACATGCCTTTGCACTGGGATGGCCATGGCAAGCGAGCACGACCCTCGAATCGATCCCTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0019216 GO:0019222 GO:0019747 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

311

Amino Acids

33.96

Weight (kDa)

5.28

Isoelectric Point (pI)

59.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61670 AT5G61670
fragaria_vesca	FvH4_7g26730 FvH4_7g26730 FvH4_7g26730
malus_domestica	MD01G1175600.v1.1 MD04G1149100.v1.1 MD07G1241900.v1.1 MD07G1243400.v1.1 MD07G1243800.v1.1 MD07G1243900.v1.1 MD07G1244500.v1.1 MD07G1245000.v1.1 MD07G1245500.v1.1 MD07G1245900.v1.1
prunus_persica	Prupe.2G270800_v2.0.a1
pyrus_communis	pycom01g18650 pycom07g21830 pycom07g21900 pycom07g22020
rosa_chinensis	RchiOBHm_Chr1g0373321
rosa_laevigata	RLG00000026827
rosa_multiflora	Rmu_sc0031228.1_g000001 Rmu_ssc0000435.1_g000006
rosa_roxburghii	Rroxscaffold_4G00284270
rosa_rugosa	Rorug01G0377000
rosa_samantha	Rh1AG386200 Rh1BG350300 Rh1CG363400 Rh1DG381200
rosa_wichuraiana	Rw1G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	851
AciI	CCGC	3 cut(s)	32, 479, 648
AclWI	GGATC	5 cut(s)	67, 596, 843, 856, 917
AcoI	YGGCCR	1 cut(s)	891
AcsI	RAATTY	1 cut(s)	291
AcuI	CTGAAG	3 cut(s)	94, 417, 792
AcyI	GRCGYC	1 cut(s)	128
AgsI	TTSAA	3 cut(s)	665, 747, 837
AluBI	AGCT	5 cut(s)	78, 84, 108, 179, 355
AluI	AGCT	5 cut(s)	78, 84, 108, 179, 355
Alw21I	GWGCWC	3 cut(s)	357, 739, 909
AlwI	GGATC	5 cut(s)	67, 596, 843, 856, 917
Ama87I	CYCGRG	2 cut(s)	356, 622
Aor13HI	TCCGGA	1 cut(s)	851
AoxI	GGCC	3 cut(s)	215, 499, 891
ApoI	RAATTY	1 cut(s)	291
Asp700I	GAANNNNTTC	1 cut(s)	312
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	30
AvaI	CYCGRG	2 cut(s)	356, 622
AxyI	CCTNAGG	1 cut(s)	443
BaeGI	GKGCMC	1 cut(s)	869
BalI	TGGCCA	1 cut(s)	893
BamHI	GGATCC	1 cut(s)	848
BanII	GRGCYC	1 cut(s)	357
BauI	CACGAG	1 cut(s)	761
BbsI	GAAGAC	1 cut(s)	561
Bbv12I	GWGCWC	3 cut(s)	357, 739, 909
BbvCI	CCTCAGC	1 cut(s)	323
BccI	CCATC	5 cut(s)	118, 409, 649, 785, 883
BcgI	CGANNNNNNTGC	4 cut(s)	603, 637, 896, 930
BciVI	GTATCC	1 cut(s)	321
BfaI	CTAG	1 cut(s)	506
BfmI	CTRYAG	2 cut(s)	79, 683
BfuI	GTATCC	1 cut(s)	321
BmeT110I	CYCGRG	2 cut(s)	356, 622
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	3 cut(s)	216, 757, 850
BmrI	ACTGGG	1 cut(s)	894
BmsI	GCATC	3 cut(s)	583, 623, 689
BmuI	ACTGGG	1 cut(s)	894
BpiI	GAAGAC	1 cut(s)	561
BpmI	CTGGAG	1 cut(s)	70
Bpu10I	CCTNAGC	2 cut(s)	323, 844
Bsa29I	ATCGAT	2 cut(s)	122, 921
BsaBI	GATNNNNATC	1 cut(s)	118
BsaHI	GRCGYC	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	894
BsaWI	WCCGGW	1 cut(s)	851
BsaXI	ACNNNNNCTCC	2 cut(s)	618, 648
Bse1I	ACTGG	2 cut(s)	724, 889
Bse21I	CCTNAGG	1 cut(s)	443
Bse8I	GATNNNNATC	1 cut(s)	118
BseAI	TCCGGA	1 cut(s)	851
BseCI	ATCGAT	2 cut(s)	122, 921
BseDI	CCNNGG	1 cut(s)	894
BseGI	GGATG	4 cut(s)	366, 486, 614, 894
BseJI	GATNNNNATC	1 cut(s)	118
BseMII	CTCAG	2 cut(s)	314, 858
BseNI	ACTGG	2 cut(s)	724, 889
BseRI	GAGGAG	1 cut(s)	642
BseSI	GKGCMC	1 cut(s)	869
BseYI	CCCAGC	1 cut(s)	529
Bsh1285I	CGRYCG	1 cut(s)	122
BshFI	GGCC	3 cut(s)	217, 501, 893
BshVI	ATCGAT	2 cut(s)	122, 921
BsiEI	CGRYCG	1 cut(s)	122
BsiHKAI	GWGCWC	3 cut(s)	357, 739, 909
BsiHKCI	CYCGRG	2 cut(s)	356, 622
BsiSI	CCGG	2 cut(s)	218, 852
BsnI	GGCC	3 cut(s)	217, 501, 893
BsoBI	CYCGRG	2 cut(s)	356, 622
Bsp1286I	GDGCHC	4 cut(s)	357, 739, 869, 909
Bsp13I	TCCGGA	1 cut(s)	851
Bsp143I	GATC	6 cut(s)	59, 119, 601, 642, 848, 922
Bsp19I	CCATGG	1 cut(s)	894
BspACI	CCGC	3 cut(s)	32, 479, 648
BspANI	GGCC	3 cut(s)	217, 501, 893
BspCNI	CTCAG	2 cut(s)	315, 857
BspDI	ATCGAT	2 cut(s)	122, 921
BspEI	TCCGGA	1 cut(s)	851
BspLI	GGNNCC	3 cut(s)	216, 757, 850
BspMAI	CTGCAG	1 cut(s)	687
BspPI	GGATC	5 cut(s)	67, 596, 843, 856, 917
BspQI	GCTCTTC	1 cut(s)	366
BsrI	ACTGG	2 cut(s)	724, 889
BssECI	CCNNGG	1 cut(s)	894
BssMI	GATC	6 cut(s)	59, 119, 601, 642, 848, 922
BssNI	GRCGYC	1 cut(s)	128
BssSI	CACGAG	1 cut(s)	761
BssT1I	CCWWGG	1 cut(s)	894
Bst2BI	CACGAG	1 cut(s)	761
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	2 cut(s)	303, 366
BstACI	GRCGYC	1 cut(s)	128
BstC8I	GCNNGC	4 cut(s)	320, 768, 901, 905
BstDEI	CTNAG	3 cut(s)	323, 443, 844
BstDSI	CCRYGG	1 cut(s)	894
BstF5I	GGATG	4 cut(s)	366, 486, 614, 894
BstKTI	GATC	6 cut(s)	62, 122, 604, 645, 851, 925
BstMBI	GATC	6 cut(s)	59, 119, 601, 642, 848, 922
BstMCI	CGRYCG	1 cut(s)	122
BstMWI	GCNNNNNNNGC	1 cut(s)	873
BstNSI	RCATGY	1 cut(s)	876
BstSFI	CTRYAG	2 cut(s)	79, 683
BstSLI	GKGCMC	1 cut(s)	869
BstV2I	GAAGAC	1 cut(s)	561
BstX2I	RGATCY	1 cut(s)	848
BstYI	RGATCY	1 cut(s)	848
Bsu15I	ATCGAT	2 cut(s)	122, 921
Bsu36I	CCTNAGG	1 cut(s)	443
BsuI	GTATCC	1 cut(s)	321
BsuRI	GGCC	3 cut(s)	217, 501, 893
BsuTUI	ATCGAT	2 cut(s)	122, 921
BtgI	CCRYGG	1 cut(s)	894
BtsCI	GGATG	4 cut(s)	366, 486, 614, 894
BtsIMutI	CAGTG	3 cut(s)	231, 650, 882
Cac8I	GCNNGC	4 cut(s)	320, 768, 901, 905
Cfr13I	GGNCC	1 cut(s)	215
ClaI	ATCGAT	2 cut(s)	122, 921
CseI	GACGC	1 cut(s)	117
CviAII	CATG	2 cut(s)	873, 895
DdeI	CTNAG	3 cut(s)	323, 443, 844
DpnI	GATC	6 cut(s)	61, 121, 603, 644, 850, 924
DpnII	GATC	6 cut(s)	59, 119, 601, 642, 848, 922
EaeI	YGGCCR	1 cut(s)	891
Eam1104I	CTCTTC	2 cut(s)	303, 366
EarI	CTCTTC	2 cut(s)	303, 366
Ecl136II	GAGCTC	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	894
Eco24I	GRGCYC	1 cut(s)	357
Eco32I	GATATC	1 cut(s)	725
Eco53kI	GAGCTC	1 cut(s)	355
Eco57I	CTGAAG	3 cut(s)	94, 417, 792
Eco81I	CCTNAGG	1 cut(s)	443
Eco88I	CYCGRG	2 cut(s)	356, 622
EcoICRI	GAGCTC	1 cut(s)	355
EcoRV	GATATC	1 cut(s)	725
EcoT14I	CCWWGG	1 cut(s)	894
EcoT38I	GRGCYC	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	894
FaeI	CATG	2 cut(s)	876, 898
FatI	CATG	2 cut(s)	872, 894
FauI	CCCGC	1 cut(s)	472
FauNDI	CATATG	2 cut(s)	303, 550
FokI	GGATG	4 cut(s)	373, 473, 601, 901
FriOI	GRGCYC	1 cut(s)	357
FspBI	CTAG	1 cut(s)	506
GsaI	CCCAGC	1 cut(s)	533
GsuI	CTGGAG	1 cut(s)	70
HaeIII	GGCC	3 cut(s)	217, 501, 893
HapII	CCGG	2 cut(s)	218, 852
HgaI	GACGC	1 cut(s)	117
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	2 cut(s)	876, 898
HindIII	AAGCTT	1 cut(s)	106
HinfI	GANTC	8 cut(s)	134, 167, 173, 198, 259, 277, 483, 918
HpaII	CCGG	2 cut(s)	218, 852
HphI	GGTGA	1 cut(s)	30
Hpy188I	TCNGA	6 cut(s)	113, 133, 139, 172, 276, 393
Hpy188III	TCNNGA	6 cut(s)	87, 263, 358, 624, 846, 852
Hpy99I	CGWCG	1 cut(s)	285
HpyAV	CCTTC	2 cut(s)	153, 628
HpyCH4III	ACNGT	1 cut(s)	226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	873
HpyF3I	CTNAG	3 cut(s)	323, 443, 844
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	2 cut(s)	876, 898
Kpn2I	TCCGGA	1 cut(s)	851
Kzo9I	GATC	6 cut(s)	59, 119, 601, 642, 848, 922
LguI	GCTCTTC	1 cut(s)	366
LmnI	GCTCC	2 cut(s)	89, 629
LweI	GCATC	3 cut(s)	583, 623, 689
MaeI	CTAG	1 cut(s)	506
MalI	GATC	6 cut(s)	61, 121, 603, 644, 850, 924
MboI	GATC	6 cut(s)	59, 119, 601, 642, 848, 922
MboII	GAAGA	4 cut(s)	138, 320, 383, 566
MflI	RGATCY	1 cut(s)	848
MhlI	GDGCHC	4 cut(s)	357, 739, 869, 909
MlsI	TGGCCA	1 cut(s)	893
MluCI	AATT	1 cut(s)	291
MluNI	TGGCCA	1 cut(s)	893
MlyI	GAGTC	2 cut(s)	143, 286
MmeI	TCCRAC	1 cut(s)	616
Mox20I	TGGCCA	1 cut(s)	893
MroI	TCCGGA	1 cut(s)	851
MroXI	GAANNNNTTC	1 cut(s)	312
MscI	TGGCCA	1 cut(s)	893
MseI	TTAA	3 cut(s)	93, 342, 934
MslI	CAYNNNNRTG	1 cut(s)	887
Msp20I	TGGCCA	1 cut(s)	893
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	2 cut(s)	218, 852
MwoI	GCNNNNNNNGC	1 cut(s)	873
NcoI	CCATGG	1 cut(s)	894
NdeI	CATATG	2 cut(s)	303, 550
NdeII	GATC	6 cut(s)	59, 119, 601, 642, 848, 922
NlaIII	CATG	2 cut(s)	876, 898
NlaIV	GGNNCC	3 cut(s)	216, 757, 850
NspI	RCATGY	1 cut(s)	876
PciSI	GCTCTTC	1 cut(s)	366
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	6 cut(s)	167, 173, 198, 259, 483, 918
Ple19I	CGATCG	1 cut(s)	122
PleI	GAGTC	2 cut(s)	142, 285
PpsI	GAGTC	2 cut(s)	142, 285
Psp124BI	GAGCTC	1 cut(s)	357
PspFI	CCCAGC	1 cut(s)	529
PspN4I	GGNNCC	3 cut(s)	216, 757, 850
PspPI	GGNCC	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	687
PsuI	RGATCY	1 cut(s)	848
PvuI	CGATCG	1 cut(s)	122
PvuII	CAGCTG	1 cut(s)	179
RseI	CAYNNNNRTG	1 cut(s)	887
SacI	GAGCTC	1 cut(s)	357
SapI	GCTCTTC	1 cut(s)	366
SaqAI	TTAA	3 cut(s)	93, 342, 934
Sau3AI	GATC	6 cut(s)	59, 119, 601, 642, 848, 922
Sau96I	GGNCC	1 cut(s)	215
SchI	GAGTC	2 cut(s)	143, 286
SduI	GDGCHC	4 cut(s)	357, 739, 869, 909
SfaNI	GCATC	3 cut(s)	583, 623, 689
SfcI	CTRYAG	2 cut(s)	79, 683
SmiMI	CAYNNNNRTG	1 cut(s)	887
Sse9I	AATT	1 cut(s)	291
SsiI	CCGC	3 cut(s)	32, 479, 648
SspI	AATATT	2 cut(s)	271, 707
SspMI	CTAG	1 cut(s)	506
SstI	GAGCTC	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	894
TaaI	ACNGT	1 cut(s)	226
TaqI	TCGA	4 cut(s)	22, 122, 916, 921
TasI	AATT	1 cut(s)	291
TfiI	GAWTC	6 cut(s)	167, 173, 198, 259, 483, 918
Tru1I	TTAA	3 cut(s)	93, 342, 934
Tru9I	TTAA	3 cut(s)	93, 342, 934
TscAI	CASTG	3 cut(s)	231, 657, 889
TspDTI	ATGAA	4 cut(s)	397, 399, 550, 567
TspRI	CASTG	3 cut(s)	231, 657, 889
XapI	RAATTY	1 cut(s)	291
XceI	RCATGY	1 cut(s)	876
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.