AT5G64790

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
25902533 .. 25904804
2272 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G64790.1

Sequence Viewer

Length: 1458 bp
ATGGCCGGAAGAGCAGCGATGCTCGTTAACGTCGGGACGGTTATAATGACCGTTTTGACCCTGGCTAGTTTGGTCGGAGGCTTCGGTGTGAATTGGGGCAATATCGCATCACATCCGTTGAATCCCAACATTGTTGTTCAGATGCTTAAGGACAATAAGATCAATAAAGTGAAGCTTTTTGACGCTGATTCATGGACGATGAATGCTTTGGCTGGTACGGGCATGGAGGTTATGGTTGGAATCCCTAATAACCTTCTTGAGTCTCTCGCAGATGATTACGATAATGCTAAAGATTGGGTTAAAGAAAACGTGACCCAGTATATTCGTAAGGGTGGCGTCGACATCAAGTACGTAGCCGTGGGGAACGAGCCGTTTTTGTCTGCATACAACGGATCGTTCTTGAAGACAACATTTCCAGCGTTAAAGAACATTCACAAGGCGTTAAAAGAAGCTGGACACACCAATATAATGAAAGCCACGATCCCACAAAACGCAGAAGTTTACCAATCAGCCAACGACAAGCCATCAGAAGGTGATTTCCGCAAGGATGTCAAACAAACGATGCTTGATATCGTCAATTTCTTCCACGAAAACGACTTACCTTTCACCGTCAACATTTACCCTTTCCTTAGTCTTTACCTAAACGAGCATTTTCCCGTTGAGTTCGCTTTTCTTGACGGTGATGGTCAGACAATGACTGACAAAGGAAAGAATTATGATAACGTGTTTGACGCCAATTACGACACACTTGTTTACGCGTTGAAGAAGGCTGGGATTCACGATATGAAGATTATCGTTGGAGAGGTTGGATGGCCAACGGATGGTCACAAATATGCATCGCCGAAGCTAGCGGAGAAATTCTATGCAGGGCTTATGAAAAGACTTGCTAAGGACGGTGGGACTCCAACGAGGCCTGAAAGATTAGAGGTCTATCTCTTCGGTTTCCTCGACGAAGACATGAAGAGTATTCTTCCAGGGCCTTTTGAGAGACATTGGGGAATCTTTAGATACGATGGGACACCAAAGTTTATGCTAGATTTCACGGGACAAGGACGCCAAATGGTGCCCGTTGCAGCTAAAGGTGTGCAGTACTTGGAAAAACAATGGTGCGTAGTGAACAAAGACACGGTCAATCTAGACGAAGTTGGTCCTGATCTAGACTATGCGTGTTACCACGGGGACTGCACCGCGATGGAAGCCGGGTCAACTTGTAGTAAGCTAACCAAAGTCCAAAACATATCATACGCATTTAACATGTATTTCCAGATACAAGACCAAGACGTTAGGGCTTGCGATTTCAAAGGAGCTGCAATGATCACCAAGGTCAATGCATCCGTGGGAAGTTGCTTGTTCCCTGTTCAGATCGTTAGTGGAAGTGATGATTTCAGGATCAACTTTGTGTTCGGAAGATTCGTCGTCTTTGGACTTGTTCTTCTTGGATTGCTCACGGTTATATAA

Protein Analysis

485

Amino Acids

53.92

Weight (kDa)

5.66

Isoelectric Point (pI)

29.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 29 - 347 1e-57 Glycosyl hydrolases family 17
X8 PF07983 368 - 438 4.6e-17 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 44
AccB1I GGYRCC 1 cut(s) 1063
AccB7I CCANNNNNTGG 1 cut(s) 821
AccI GTMKAC 1 cut(s) 339
AccII CGCG 2 cut(s) 758, 1190
AciI CCGC 3 cut(s) 541, 851, 1188
AclWI GGATC 3 cut(s) 400, 475, 1397
AcoI YGGCCR 2 cut(s) 3, 812
AcsI RAATTY 1 cut(s) 857
AcyI GRCGYC 3 cut(s) 336, 732, 1054
AfaI GTAC 3 cut(s) 217, 350, 1091
AfiI CCNNNNNNNGG 2 cut(s) 530, 821
AflII CTTAAG 1 cut(s) 146
AflIII ACRYGT 3 cut(s) 723, 756, 1254
AgsI TTSAA 4 cut(s) 121, 403, 763, 1300
AjnI CCWGG 2 cut(s) 60, 973
AluBI AGCT 6 cut(s) 175, 452, 847, 1076, 1219, 1307
AluI AGCT 6 cut(s) 175, 452, 847, 1076, 1219, 1307
Alw26I GTCTC 2 cut(s) 267, 982
AlwI GGATC 3 cut(s) 400, 475, 1397
AoxI GGCC 4 cut(s) 3, 812, 911, 977
ApeKI GCWGC 3 cut(s) 14, 1073, 1307
ApoI RAATTY 1 cut(s) 857
ArsI GACNNNNNNTTYG 2 cut(s) 1113, 1145
AspS9I GGNCC 2 cut(s) 977, 1148
AsuC2I CCSGG 1 cut(s) 1201
AsuHPI GGTGA 4 cut(s) 545, 598, 692, 1309
AsuNHI GCTAGC 1 cut(s) 847
AvaII GGWCC 1 cut(s) 1148
BaeGI GKGCMC 1 cut(s) 1068
BalI TGGCCA 1 cut(s) 814
BanI GGYRCC 1 cut(s) 1063
BbsI GAAGAC 2 cut(s) 410, 960
BbvI GCAGC 3 cut(s) 26, 1085, 1294
BccI CCATC 6 cut(s) 532, 677, 804, 815, 1007, 1186
BceAI ACGGC 2 cut(s) 341, 355
BciT130I CCWGG 2 cut(s) 62, 975
BclI TGATCA 1 cut(s) 1314
BcnI CCSGG 1 cut(s) 1201
BcoDI GTCTC 2 cut(s) 267, 982
BfaI CTAG 5 cut(s) 66, 848, 1034, 1136, 1157
BfrI CTTAAG 1 cut(s) 146
BisI GCNGC 3 cut(s) 15, 1074, 1308
BlsI GCNGC 3 cut(s) 16, 1075, 1309
BmcAI AGTACT 1 cut(s) 1091
Bme1390I CCNGG 3 cut(s) 62, 975, 1201
Bme18I GGWCC 1 cut(s) 1148
BmgT120I GGNCC 2 cut(s) 977, 1148
BmiI GGNNCC 1 cut(s) 1065
BmrFI CCNGG 3 cut(s) 62, 975, 1201
BmrI ACTGGG 1 cut(s) 310
BmsI GCATC 6 cut(s) 9, 116, 132, 552, 845, 1340
BmtI GCTAGC 1 cut(s) 851
BmuI ACTGGG 1 cut(s) 310
BpiI GAAGAC 2 cut(s) 410, 960
Bpu10I CCTNAGC 1 cut(s) 888
BpuEI CTTGAG 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 1201
BsaAI YACGTR 1 cut(s) 352
BsaHI GRCGYC 3 cut(s) 336, 732, 1054
BsaJI CCNNGG 6 cut(s) 60, 357, 974, 1174, 1320, 1335
Bsc4I CCNNNNNNNGG 2 cut(s) 530, 821
Bse1I ACTGG 1 cut(s) 316
Bse3DI GCAATG 1 cut(s) 1317
BseBI CCWGG 2 cut(s) 62, 975
BseDI CCNNGG 6 cut(s) 60, 357, 974, 1174, 1320, 1335
BseGI GGATG 5 cut(s) 112, 553, 815, 826, 1331
BseLI CCNNNNNNNGG 2 cut(s) 530, 821
BseMI GCAATG 1 cut(s) 1317
BseNI ACTGG 1 cut(s) 316
BseSI GKGCMC 1 cut(s) 1068
BseXI GCAGC 3 cut(s) 26, 1085, 1294
BseYI CCCAGC 1 cut(s) 770
BsgI GTGCAG 2 cut(s) 1106, 1168
Bsh1236I CGCG 2 cut(s) 758, 1190
BshFI GGCC 4 cut(s) 5, 814, 913, 979
BshNI GGYRCC 1 cut(s) 1063
BsiSI CCGG 2 cut(s) 6, 1200
BslFI GGGAC 5 cut(s) 49, 913, 1030, 1059, 1193
BslI CCNNNNNNNGG 2 cut(s) 530, 821
BsmAI GTCTC 2 cut(s) 267, 982
BsmFI GGGAC 5 cut(s) 49, 913, 1030, 1059, 1193
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 4 cut(s) 5, 814, 913, 979
Bsp1286I GDGCHC 1 cut(s) 1068
Bsp143I GATC 7 cut(s) 159, 392, 480, 1153, 1314, 1362, 1389
BspACI CCGC 3 cut(s) 541, 851, 1188
BspANI GGCC 4 cut(s) 5, 814, 913, 979
BspFNI CGCG 2 cut(s) 758, 1190
BspLI GGNNCC 1 cut(s) 1065
BspOI GCTAGC 1 cut(s) 851
BspPI GGATC 3 cut(s) 400, 475, 1397
BspQI GCTCTTC 1 cut(s) 4
BspT107I GGYRCC 1 cut(s) 1063
BspTI CTTAAG 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 1317
BsrI ACTGG 1 cut(s) 316
BssECI CCNNGG 6 cut(s) 60, 357, 974, 1174, 1320, 1335
BssMI GATC 7 cut(s) 159, 392, 480, 1153, 1314, 1362, 1389
BssNI GRCGYC 3 cut(s) 336, 732, 1054
BssT1I CCWWGG 1 cut(s) 1320
Bst2UI CCWGG 2 cut(s) 62, 975
Bst4CI ACNGT 7 cut(s) 40, 52, 610, 680, 896, 1129, 1450
Bst6I CTCTTC 3 cut(s) 4, 941, 956
BstACI GRCGYC 3 cut(s) 336, 732, 1054
BstAFI CTTAAG 1 cut(s) 146
BstBAI YACGTR 1 cut(s) 352
BstC8I GCNNGC 2 cut(s) 849, 1291
BstDEI CTNAG 2 cut(s) 629, 888
BstDSI CCRYGG 3 cut(s) 357, 1174, 1335
BstF5I GGATG 5 cut(s) 112, 553, 815, 826, 1331
BstFNI CGCG 2 cut(s) 758, 1190
BstKTI GATC 7 cut(s) 162, 395, 483, 1156, 1317, 1365, 1392
BstMAI GTCTC 2 cut(s) 267, 982
BstMBI GATC 7 cut(s) 159, 392, 480, 1153, 1314, 1362, 1389
BstMWI GCNNNNNNNGC 2 cut(s) 11, 1196
BstNI CCWGG 2 cut(s) 62, 975
BstNSI RCATGY 1 cut(s) 1258
BstSCI CCNGG 3 cut(s) 60, 973, 1199
BstSLI GKGCMC 1 cut(s) 1068
BstSNI TACGTA 1 cut(s) 352
BstUI CGCG 2 cut(s) 758, 1190
BstV1I GCAGC 3 cut(s) 26, 1085, 1294
BstV2I GAAGAC 2 cut(s) 410, 960
BsuRI GGCC 4 cut(s) 5, 814, 913, 979
BtgI CCRYGG 3 cut(s) 357, 1174, 1335
BtgZI GCGATG 3 cut(s) 32, 822, 1205
BtsCI GGATG 5 cut(s) 112, 553, 815, 826, 1331
Cac8I GCNNGC 2 cut(s) 849, 1291
Cfr13I GGNCC 2 cut(s) 977, 1148
CseI GACGC 4 cut(s) 191, 325, 740, 1062
Csp6I GTAC 3 cut(s) 216, 349, 1090
CviAII CATG 4 cut(s) 192, 223, 958, 1255
CviQI GTAC 3 cut(s) 216, 349, 1090
DdeI CTNAG 2 cut(s) 629, 888
DpnI GATC 7 cut(s) 161, 394, 482, 1155, 1316, 1364, 1391
DpnII GATC 7 cut(s) 159, 392, 480, 1153, 1314, 1362, 1389
EaeI YGGCCR 2 cut(s) 3, 812
Eam1104I CTCTTC 3 cut(s) 4, 941, 956
EarI CTCTTC 3 cut(s) 4, 941, 956
Eco105I TACGTA 1 cut(s) 352
Eco130I CCWWGG 1 cut(s) 1320
Eco147I AGGCCT 1 cut(s) 913
Eco32I GATATC 1 cut(s) 571
Eco47I GGWCC 1 cut(s) 1148
EcoO109I RGGNCCY 1 cut(s) 977
EcoRII CCWGG 2 cut(s) 60, 973
EcoRV GATATC 1 cut(s) 571
EcoT14I CCWWGG 1 cut(s) 1320
EcoT22I ATGCAT 2 cut(s) 838, 1333
ErhI CCWWGG 1 cut(s) 1320
FaeI CATG 4 cut(s) 195, 226, 961, 1258
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FaqI GGGAC 5 cut(s) 49, 913, 1030, 1059, 1193
FatI CATG 4 cut(s) 191, 222, 957, 1254
FbaI TGATCA 1 cut(s) 1314
FblI GTMKAC 1 cut(s) 339
Fnu4HI GCNGC 3 cut(s) 15, 1074, 1308
FokI GGATG 5 cut(s) 99, 560, 822, 833, 1318
Fsp4HI GCNGC 3 cut(s) 15, 1074, 1308
FspBI CTAG 5 cut(s) 66, 848, 1034, 1136, 1157
GluI GCNGC 3 cut(s) 15, 1074, 1308
GsaI CCCAGC 1 cut(s) 774
HaeIII GGCC 4 cut(s) 5, 814, 913, 979
HapII CCGG 2 cut(s) 6, 1200
HgaI GACGC 4 cut(s) 191, 325, 740, 1062
Hin1I GRCGYC 3 cut(s) 336, 732, 1054
Hin1II CATG 4 cut(s) 195, 226, 961, 1258
HincII GTYRAC 4 cut(s) 28, 340, 613, 1206
HindII GTYRAC 4 cut(s) 28, 340, 613, 1206
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 8 cut(s) 121, 188, 240, 260, 775, 901, 999, 1410
HpaI GTTAAC 1 cut(s) 28
HpaII CCGG 2 cut(s) 6, 1200
HphI GGTGA 4 cut(s) 545, 598, 692, 1309
Hpy166II GTNNAC 7 cut(s) 28, 340, 502, 613, 754, 1117, 1206
Hpy188I TCNGA 6 cut(s) 77, 141, 529, 690, 1362, 1406
Hpy8I GTNNAC 7 cut(s) 28, 340, 502, 613, 754, 1117, 1206
Hpy99I CGWCG 4 cut(s) 35, 341, 953, 1418
HpyAV CCTTC 3 cut(s) 263, 524, 760
HpyCH4III ACNGT 7 cut(s) 40, 52, 610, 680, 896, 1129, 1450
HpyCH4IV ACGT 5 cut(s) 30, 309, 351, 723, 1281
HpyCH4V TGCA 8 cut(s) 383, 836, 866, 1073, 1087, 1185, 1310, 1331
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 1196
HpyF3I CTNAG 2 cut(s) 629, 888
HpySE526I ACGT 5 cut(s) 30, 309, 351, 723, 1281
Hsp92I GRCGYC 3 cut(s) 336, 732, 1054
Hsp92II CATG 4 cut(s) 195, 226, 961, 1258
Ksp22I TGATCA 1 cut(s) 1314
KspAI GTTAAC 1 cut(s) 28
Kzo9I GATC 7 cut(s) 159, 392, 480, 1153, 1314, 1362, 1389
LguI GCTCTTC 1 cut(s) 4
LmnI GCTCC 1 cut(s) 1304
Lsp1109I GCAGC 3 cut(s) 26, 1085, 1294
LweI GCATC 6 cut(s) 9, 116, 132, 552, 845, 1340
MaeI CTAG 5 cut(s) 66, 848, 1034, 1136, 1157
MaeII ACGT 5 cut(s) 30, 309, 351, 723, 1281
MaeIII GTNAC 3 cut(s) 310, 824, 1169
MalI GATC 7 cut(s) 161, 394, 482, 1155, 1316, 1364, 1391
MboI GATC 7 cut(s) 159, 392, 480, 1153, 1314, 1362, 1389
MhlI GDGCHC 1 cut(s) 1068
MlsI TGGCCA 1 cut(s) 814
MluCI AATT 5 cut(s) 91, 577, 712, 736, 857
MluI ACGCGT 1 cut(s) 756
MluNI TGGCCA 1 cut(s) 814
MlyI GAGTC 2 cut(s) 269, 895
MmeI TCCRAC 5 cut(s) 55, 217, 778, 787, 929
MnlI CCTC 6 cut(s) 71, 220, 796, 903, 919, 956
Mox20I TGGCCA 1 cut(s) 814
Mph1103I ATGCAT 2 cut(s) 838, 1333
MscI TGGCCA 1 cut(s) 814
MseI TTAA 6 cut(s) 27, 147, 300, 422, 443, 1251
MslI CAYNNNNRTG 2 cut(s) 831, 1190
Msp20I TGGCCA 1 cut(s) 814
MspCI CTTAAG 1 cut(s) 146
MspI CCGG 2 cut(s) 6, 1200
MspR9I CCNGG 3 cut(s) 62, 975, 1201
Mva1269I GAATGC 1 cut(s) 208
MvaI CCWGG 2 cut(s) 62, 975
MvnI CGCG 2 cut(s) 758, 1190
MwoI GCNNNNNNNGC 2 cut(s) 11, 1196
NciI CCSGG 1 cut(s) 1201
NdeII GATC 7 cut(s) 159, 392, 480, 1153, 1314, 1362, 1389
NheI GCTAGC 1 cut(s) 847
NlaIII CATG 4 cut(s) 195, 226, 961, 1258
NlaIV GGNNCC 1 cut(s) 1065
NmuCI GTSAC 2 cut(s) 310, 824
NsiI ATGCAT 2 cut(s) 838, 1333
NspI RCATGY 1 cut(s) 1258
PceI AGGCCT 1 cut(s) 913
PciI ACATGT 1 cut(s) 1254
PciSI GCTCTTC 1 cut(s) 4
PcsI WCGNNNNNNNCGW 3 cut(s) 738, 945, 1410
PctI GAATGC 1 cut(s) 208
PfeI GAWTC 6 cut(s) 121, 188, 240, 775, 999, 1410
PflFI GACNNNGTC 1 cut(s) 1127
PflMI CCANNNNNTGG 1 cut(s) 821
PkrI GCNGC 3 cut(s) 16, 1075, 1309
PleI GAGTC 2 cut(s) 268, 895
PpsI GAGTC 2 cut(s) 268, 895
Ppu21I YACGTR 1 cut(s) 352
PscI ACATGT 1 cut(s) 1254
PsiI TTATAA 1 cut(s) 44
Psp6I CCWGG 2 cut(s) 60, 973
PspFI CCCAGC 1 cut(s) 770
PspGI CCWGG 2 cut(s) 60, 973
PspN4I GGNNCC 1 cut(s) 1065
PspPI GGNCC 2 cut(s) 977, 1148
PsyI GACNNNGTC 1 cut(s) 1127
RsaI GTAC 3 cut(s) 217, 350, 1091
RsaNI GTAC 3 cut(s) 216, 349, 1090
RseI CAYNNNNRTG 2 cut(s) 831, 1190
SalI GTCGAC 1 cut(s) 338
SapI GCTCTTC 1 cut(s) 4
SaqAI TTAA 6 cut(s) 27, 147, 300, 422, 443, 1251
SatI GCNGC 3 cut(s) 15, 1074, 1308
Sau3AI GATC 7 cut(s) 159, 392, 480, 1153, 1314, 1362, 1389
Sau96I GGNCC 2 cut(s) 977, 1148
ScaI AGTACT 1 cut(s) 1091
SchI GAGTC 2 cut(s) 269, 895
ScrFI CCNGG 3 cut(s) 62, 975, 1201
SduI GDGCHC 1 cut(s) 1068
SfaNI GCATC 6 cut(s) 9, 116, 132, 552, 845, 1340
SinI GGWCC 1 cut(s) 1148
SmiMI CAYNNNNRTG 2 cut(s) 831, 1190
SmlI CTYRAG 2 cut(s) 146, 257
SmoI CTYRAG 2 cut(s) 146, 257
SnaBI TACGTA 1 cut(s) 352
Sse9I AATT 5 cut(s) 91, 577, 712, 736, 857
SseBI AGGCCT 1 cut(s) 913
SsiI CCGC 3 cut(s) 541, 851, 1188
SspMI CTAG 5 cut(s) 66, 848, 1034, 1136, 1157
StuI AGGCCT 1 cut(s) 913
StyD4I CCNGG 3 cut(s) 60, 973, 1199
StyI CCWWGG 1 cut(s) 1320
TaaI ACNGT 7 cut(s) 40, 52, 610, 680, 896, 1129, 1450
TaiI ACGT 5 cut(s) 33, 312, 354, 726, 1284
TaqI TCGA 2 cut(s) 339, 948
TasI AATT 5 cut(s) 91, 577, 712, 736, 857
TatI WGTACW 1 cut(s) 1089
TfiI GAWTC 6 cut(s) 121, 188, 240, 775, 999, 1410
Tru1I TTAA 6 cut(s) 27, 147, 300, 422, 443, 1251
Tru9I TTAA 6 cut(s) 27, 147, 300, 422, 443, 1251
TseFI GTSAC 2 cut(s) 310, 824
TseI GCWGC 3 cut(s) 14, 1073, 1307
Tsp45I GTSAC 2 cut(s) 310, 824
TspDTI ATGAA 6 cut(s) 180, 215, 485, 800, 890, 974
TspGWI ACGGA 4 cut(s) 105, 405, 833, 1324
Tth111I GACNNNGTC 1 cut(s) 1127
Van91I CCANNNNNTGG 1 cut(s) 821
Vha464I CTTAAG 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 1148
XapI RAATTY 1 cut(s) 857
XbaI TCTAGA 2 cut(s) 1135, 1156
XceI RCATGY 1 cut(s) 1258
XmiI GTMKAC 1 cut(s) 339
XspI CTAG 5 cut(s) 66, 848, 1034, 1136, 1157
ZrmI AGTACT 1 cut(s) 1091
Zsp2I ATGCAT 2 cut(s) 838, 1333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.