Rh2DG294800

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
34678368 .. 34683281
4914 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG294800.1

Sequence Viewer

Length: 1404 bp
ATGGTTCGAGTCTCAATTCTTGTAACATGTGTCATCTCTCTAATGTTTGTGGTCTTGACAGACCATGCTCAAGGTTTAGGTGTCAACTGGGGAGCAATGGCATCGCACCCTATGGATCCCAGCAATGTAGTAAAGATGCTCAAGGACAATGGGATCAAGAAAGTGAAGCTTTTCGACGCAGAGCCTGCCACCATGAAGGCCTTGTCCGGGTCAGGTATTTCGGTCATTGTTGGAATTCCCAATGACAAGTTGGCCTCAATTTCTTCAGCTTACAAACATGCCCAAAAATGGGTGAAAGAAAACATCACCAAATATGATCATAATGGGGGCGTTGATATCAGCTATGTGGCTGTTGGAAACGAGCCATTCTTAACAAGTTACAATGGGAGTTTTTACAAGACTACTTTTCCAGCATTGCAAAACATTCAAAAGGCCCTAGATGAAGCTGGCACCAGACAGAAAATCAAAGCCATAGTGCCCTTCAATGCCGATGTTTACGAATCTGCTTCGGGCAAACCATCGGAAGGTCAGTTCCGAAAAGACATCAAGAGTGAGATGCTCAAGATACTAGGTTTGCTCAAGAGCAATAAGTCTCCATTTTTCGTTAACATATATCCCTTCCTTAGTCTCCAACAGAGCTCTCATTTCCCCAAAGAATTTGCATTCTTTGATGGTACTAGCAAACCTGTTCGAGACAACAACCACGAATATACCAATGTGTTTGATGCAAATCATGACACACTTATTTGGTCACTCAAGAAGGTTGGTTACCAGGACTTGGACATAGTTATTGGAGAAGCGGGATGGCCTACCGATGGTGACAAGAATGCCAATAAAATTTTGGCGAAGAAATTCTATGATGGACTTCTCAAGAAATTAGCGAAGGCGGACGGAACCCCTCTTCAAAAAGAGTACTTGGAAGTGTACCTTTTTGGGCTCACTGACGAGGACCAAAAAAGTATTGCCCCAGGGGACTTTGAGCGCCACTGGGGCATCTTAGGCTATGATGGAAAACCCAAGTTCCCAATGGACCTCACCGGGAAAGGGAACAATAAAATGCTCAAGGCTGTACAAGGAGTGGAGTACATGGAGAAGCAATGGTGTGTCTTGAACAGCGATGTTCGAAATGGCAGTATTTTACAAACCGAACTCAATTACGCTTGTTCTCAGACAGATTGCTCATCTTTAGGAGGTGGAAGGTCATGCGATTTGGATTTGCAAGGGAAAGTCTCCTATGCTTTCAATTCTTTCTTCCAAAGCAGAGACCAAGACGTTCGGACCTGCAATTTTGATGGCAAGGGAACGATTACAAAAGACGATCCTTCTAAAGGAACTTGCGTATTCAATATACAGATTTACAGTGCTGGAAAAAGCAACTCAATAGAGGGCACCCATATGTCTTAA

Protein Analysis

467

Amino Acids

51.61

Weight (kDa)

7.98

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 26 - 344 3.1e-61 Glycosyl hydrolases family 17
X8 PF07983 366 - 435 1.1e-13 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1289
AccB1I GGYRCC 2 cut(s) 449, 1388
AccB7I CCANNNNNTGG 1 cut(s) 778
AciI CCGC 2 cut(s) 800, 887
AclWI GGATC 4 cut(s) 110, 123, 161, 1313
AcsI RAATTY 4 cut(s) 234, 656, 837, 851
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 5 cut(s) 676, 914, 926, 1071, 1085
AfiI CCNNNNNNNGG 8 cut(s) 207, 288, 289, 524, 778, 815, 1044, 1328
AflIII ACRYGT 1 cut(s) 26
AgsI TTSAA 6 cut(s) 428, 484, 905, 1111, 1243, 1345
AjnI CCWGG 2 cut(s) 771, 967
AloI GAACNNNNNNTCC 2 cut(s) 515, 547
AluBI AGCT 5 cut(s) 169, 269, 342, 446, 639
AluI AGCT 5 cut(s) 169, 269, 342, 446, 639
Alw21I GWGCWC 1 cut(s) 641
Alw26I GTCTC 6 cut(s) 16, 597, 632, 687, 1234, 1257
AlwI GGATC 4 cut(s) 110, 123, 161, 1313
AlwNI CAGNNNCTG 1 cut(s) 185
AoxI GGCC 4 cut(s) 198, 252, 432, 806
ApoI RAATTY 4 cut(s) 234, 656, 837, 851
Asp700I GAANNNNTTC 2 cut(s) 170, 851
AspLEI GCGC 1 cut(s) 984
AspS9I GGNCC 4 cut(s) 433, 949, 1030, 1278
AsuC2I CCSGG 2 cut(s) 208, 1039
AsuHPI GGTGA 4 cut(s) 298, 304, 830, 1027
AsuII TTCGAA 1 cut(s) 1123
AvaII GGWCC 3 cut(s) 949, 1030, 1278
BaeGI GKGCMC 2 cut(s) 480, 1391
BamHI GGATCC 1 cut(s) 115
BanI GGYRCC 2 cut(s) 449, 1388
BanII GRGCYC 2 cut(s) 641, 939
BarI GAAGNNNNNNTAC 2 cut(s) 752, 784
Bbv12I GWGCWC 1 cut(s) 641
BccI CCATC 7 cut(s) 526, 665, 798, 809, 854, 1001, 1286
BcgI CGANNNNNNTGC 2 cut(s) 84, 118
BciT130I CCWGG 2 cut(s) 773, 969
BclI TGATCA 1 cut(s) 316
BcnI CCSGG 2 cut(s) 208, 1039
BcoDI GTCTC 6 cut(s) 16, 597, 632, 687, 1234, 1257
BfaI CTAG 3 cut(s) 437, 569, 678
BfoI RGCGCY 1 cut(s) 985
BfuAI ACCTGC 1 cut(s) 1289
BglI GCCNNNNNGGC 1 cut(s) 990
BmcAI AGTACT 1 cut(s) 914
Bme1390I CCNGG 4 cut(s) 208, 773, 969, 1039
Bme18I GGWCC 3 cut(s) 949, 1030, 1278
BmgT120I GGNCC 4 cut(s) 433, 949, 1030, 1278
BmiI GGNNCC 4 cut(s) 117, 451, 895, 1390
BmrFI CCNGG 4 cut(s) 208, 773, 969, 1039
BmrI ACTGGG 2 cut(s) 97, 997
BmsI GCATC 5 cut(s) 110, 126, 546, 715, 1002
BmuI ACTGGG 2 cut(s) 97, 997
Bpu14I TTCGAA 1 cut(s) 1123
BpuEI CTTGAG 7 cut(s) 54, 125, 545, 563, 740, 854, 1046
BpuMI CCSGG 2 cut(s) 208, 1039
BsaBI GATNNNNATC 1 cut(s) 729
BsaI GGTCTC 1 cut(s) 1257
BsaJI CCNNGG 2 cut(s) 967, 968
Bsc4I CCNNNNNNNGG 8 cut(s) 207, 288, 289, 524, 778, 815, 1044, 1328
Bse1I ACTGG 2 cut(s) 92, 992
Bse3DI GCAATG 4 cut(s) 102, 130, 413, 1103
Bse8I GATNNNNATC 1 cut(s) 729
BseBI CCWGG 2 cut(s) 773, 969
BseDI CCNNGG 2 cut(s) 967, 968
BseGI GGATG 1 cut(s) 809
BseJI GATNNNNATC 1 cut(s) 729
BseLI CCNNNNNNNGG 8 cut(s) 207, 288, 289, 524, 778, 815, 1044, 1328
BseMI GCAATG 4 cut(s) 102, 130, 413, 1103
BseMII CTCAG 1 cut(s) 1181
BseNI ACTGG 2 cut(s) 92, 992
BseSI GKGCMC 2 cut(s) 480, 1391
BseYI CCCAGC 1 cut(s) 119
BshFI GGCC 4 cut(s) 200, 254, 434, 808
BshNI GGYRCC 2 cut(s) 449, 1388
BsiHKAI GWGCWC 1 cut(s) 641
BsiSI CCGG 2 cut(s) 207, 1038
BslFI GGGAC 1 cut(s) 986
BslI CCNNNNNNNGG 8 cut(s) 207, 288, 289, 524, 778, 815, 1044, 1328
BsmAI GTCTC 6 cut(s) 16, 597, 632, 687, 1234, 1257
BsmFI GGGAC 1 cut(s) 986
BsmI GAATGC 2 cut(s) 662, 832
BsnI GGCC 4 cut(s) 200, 254, 434, 808
Bso31I GGTCTC 1 cut(s) 1257
Bsp119I TTCGAA 1 cut(s) 1123
Bsp1286I GDGCHC 4 cut(s) 480, 641, 939, 1391
Bsp1407I TGTACA 1 cut(s) 1069
Bsp143I GATC 4 cut(s) 115, 153, 316, 1318
BspACI CCGC 2 cut(s) 800, 887
BspANI GGCC 4 cut(s) 200, 254, 434, 808
BspCNI CTCAG 1 cut(s) 1180
BspHI TCATGA 1 cut(s) 733
BspLI GGNNCC 4 cut(s) 117, 451, 895, 1390
BspMI ACCTGC 1 cut(s) 1289
BspPI GGATC 4 cut(s) 110, 123, 161, 1313
BspT104I TTCGAA 1 cut(s) 1123
BspT107I GGYRCC 2 cut(s) 449, 1388
BspTNI GGTCTC 1 cut(s) 1257
BsrDI GCAATG 4 cut(s) 102, 130, 413, 1103
BsrGI TGTACA 1 cut(s) 1069
BsrI ACTGG 2 cut(s) 92, 992
BssECI CCNNGG 2 cut(s) 967, 968
BssMI GATC 4 cut(s) 115, 153, 316, 1318
Bst2UI CCWGG 2 cut(s) 773, 969
Bst4CI ACNGT 1 cut(s) 1361
Bst6I CTCTTC 1 cut(s) 906
BstAPI GCANNNNNTGC 1 cut(s) 185
BstAUI TGTACA 1 cut(s) 1069
BstBI TTCGAA 1 cut(s) 1123
BstC8I GCNNGC 2 cut(s) 186, 448
BstDEI CTNAG 3 cut(s) 623, 997, 1167
BstEII GGTNACC 1 cut(s) 767
BstENI CCTNNNNNAGG 1 cut(s) 1326
BstF5I GGATG 1 cut(s) 809
BstH2I RGCGCY 1 cut(s) 985
BstHHI GCGC 1 cut(s) 984
BstKTI GATC 4 cut(s) 118, 156, 319, 1321
BstMAI GTCTC 6 cut(s) 16, 597, 632, 687, 1234, 1257
BstMBI GATC 4 cut(s) 115, 153, 316, 1318
BstMWI GCNNNNNNNGC 3 cut(s) 185, 990, 999
BstNI CCWGG 2 cut(s) 773, 969
BstNSI RCATGY 2 cut(s) 30, 281
BstPI GGTNACC 1 cut(s) 767
BstSCI CCNGG 4 cut(s) 206, 771, 967, 1037
BstSLI GKGCMC 2 cut(s) 480, 1391
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BsuRI GGCC 4 cut(s) 200, 254, 434, 808
BtgZI GCGATG 2 cut(s) 87, 1131
BtsCI GGATG 1 cut(s) 809
BtsIMutI CAGTG 3 cut(s) 939, 985, 1366
BveI ACCTGC 1 cut(s) 1289
Cac8I GCNNGC 2 cut(s) 186, 448
CaiI CAGNNNCTG 1 cut(s) 185
CciI TCATGA 1 cut(s) 733
CfoI GCGC 1 cut(s) 984
Cfr13I GGNCC 4 cut(s) 433, 949, 1030, 1278
CseI GACGC 1 cut(s) 185
Csp6I GTAC 5 cut(s) 675, 913, 925, 1070, 1084
CviAII CATG 7 cut(s) 27, 65, 193, 278, 734, 1087, 1203
CviQI GTAC 5 cut(s) 675, 913, 925, 1070, 1084
DdeI CTNAG 3 cut(s) 623, 997, 1167
DpnI GATC 4 cut(s) 117, 155, 318, 1320
DpnII GATC 4 cut(s) 115, 153, 316, 1318
Eam1104I CTCTTC 1 cut(s) 906
EarI CTCTTC 1 cut(s) 906
EciI GGCGGA 1 cut(s) 902
Ecl136II GAGCTC 1 cut(s) 639
Eco147I AGGCCT 1 cut(s) 200
Eco24I GRGCYC 2 cut(s) 641, 939
Eco31I GGTCTC 1 cut(s) 1257
Eco32I GATATC 1 cut(s) 337
Eco47I GGWCC 3 cut(s) 949, 1030, 1278
Eco53kI GAGCTC 1 cut(s) 639
Eco57I CTGAAG 1 cut(s) 249
Eco91I GGTNACC 1 cut(s) 767
EcoICRI GAGCTC 1 cut(s) 639
EcoNI CCTNNNNNAGG 1 cut(s) 1326
EcoO109I RGGNCCY 1 cut(s) 433
EcoO65I GGTNACC 1 cut(s) 767
EcoRI GAATTC 1 cut(s) 234
EcoRII CCWGG 2 cut(s) 771, 967
EcoRV GATATC 1 cut(s) 337
EcoT38I GRGCYC 2 cut(s) 641, 939
FaeI CATG 7 cut(s) 30, 68, 196, 281, 737, 1090, 1206
FalI AAGNNNNNCTT 4 cut(s) 153, 185, 912, 944
FaqI GGGAC 1 cut(s) 986
FatI CATG 7 cut(s) 26, 64, 192, 277, 733, 1086, 1202
FauI CCCGC 1 cut(s) 793
FauNDI CATATG 1 cut(s) 1395
FbaI TGATCA 1 cut(s) 316
FokI GGATG 1 cut(s) 816
FriOI GRGCYC 2 cut(s) 641, 939
FspBI CTAG 3 cut(s) 437, 569, 678
GlaI GCGC 1 cut(s) 983
GsaI CCCAGC 1 cut(s) 123
HaeII RGCGCY 1 cut(s) 985
HaeIII GGCC 4 cut(s) 200, 254, 434, 808
HapII CCGG 2 cut(s) 207, 1038
HgaI GACGC 1 cut(s) 185
HhaI GCGC 1 cut(s) 984
Hin1II CATG 7 cut(s) 30, 68, 196, 281, 737, 1090, 1206
Hin6I GCGC 1 cut(s) 982
HinP1I GCGC 1 cut(s) 982
HincII GTYRAC 2 cut(s) 85, 607
HindII GTYRAC 2 cut(s) 85, 607
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 2 cut(s) 9, 500
HpaI GTTAAC 1 cut(s) 607
HpaII CCGG 2 cut(s) 207, 1038
HphI GGTGA 4 cut(s) 298, 304, 830, 1027
Hpy166II GTNNAC 4 cut(s) 85, 496, 607, 925
Hpy188I TCNGA 4 cut(s) 523, 536, 1170, 1278
Hpy8I GTNNAC 4 cut(s) 85, 496, 607, 925
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 8 cut(s) 190, 490, 518, 628, 754, 877, 1191, 1332
HpyCH4III ACNGT 1 cut(s) 1361
HpyCH4IV ACGT 1 cut(s) 1272
HpyCH4V TGCA 5 cut(s) 418, 662, 728, 1219, 1284
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 990, 999
HpyF3I CTNAG 3 cut(s) 623, 997, 1167
HpySE526I ACGT 1 cut(s) 1272
Hsp92II CATG 7 cut(s) 30, 68, 196, 281, 737, 1090, 1206
HspAI GCGC 1 cut(s) 982
Ksp22I TGATCA 1 cut(s) 316
KspAI GTTAAC 1 cut(s) 607
Kzo9I GATC 4 cut(s) 115, 153, 316, 1318
LmnI GCTCC 1 cut(s) 92
LweI GCATC 5 cut(s) 110, 126, 546, 715, 1002
MaeI CTAG 3 cut(s) 437, 569, 678
MaeII ACGT 1 cut(s) 1272
MaeIII GTNAC 5 cut(s) 22, 377, 750, 767, 818
MalI GATC 4 cut(s) 117, 155, 318, 1320
MboI GATC 4 cut(s) 115, 153, 316, 1318
MboII GAAGA 4 cut(s) 255, 859, 893, 1243
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 4 cut(s) 480, 641, 939, 1391
MlyI GAGTC 1 cut(s) 18
MmeI TCCRAC 3 cut(s) 211, 334, 655
MnlI CCTC 6 cut(s) 265, 909, 940, 1043, 1184, 1378
MroXI GAANNNNTTC 2 cut(s) 170, 851
MseI TTAA 3 cut(s) 371, 606, 1402
MslI CAYNNNNRTG 1 cut(s) 1394
MspI CCGG 2 cut(s) 207, 1038
MspR9I CCNGG 4 cut(s) 208, 773, 969, 1039
Mva1269I GAATGC 2 cut(s) 662, 832
MvaI CCWGG 2 cut(s) 773, 969
MwoI GCNNNNNNNGC 3 cut(s) 185, 990, 999
NciI CCSGG 2 cut(s) 208, 1039
NdeI CATATG 1 cut(s) 1395
NdeII GATC 4 cut(s) 115, 153, 316, 1318
NlaIII CATG 7 cut(s) 30, 68, 196, 281, 737, 1090, 1206
NlaIV GGNNCC 4 cut(s) 117, 451, 895, 1390
NmuCI GTSAC 2 cut(s) 750, 818
NspI RCATGY 2 cut(s) 30, 281
NspV TTCGAA 1 cut(s) 1123
PagI TCATGA 1 cut(s) 733
PasI CCCWGGG 1 cut(s) 968
PceI AGGCCT 1 cut(s) 200
PciI ACATGT 1 cut(s) 26
PctI GAATGC 2 cut(s) 662, 832
PdmI GAANNNNTTC 2 cut(s) 170, 851
PfeI GAWTC 1 cut(s) 500
PflMI CCANNNNNTGG 1 cut(s) 778
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
PscI ACATGT 1 cut(s) 26
Psp124BI GAGCTC 1 cut(s) 641
Psp6I CCWGG 2 cut(s) 771, 967
PspEI GGTNACC 1 cut(s) 767
PspFI CCCAGC 1 cut(s) 119
PspGI CCWGG 2 cut(s) 771, 967
PspN4I GGNNCC 4 cut(s) 117, 451, 895, 1390
PspPI GGNCC 4 cut(s) 433, 949, 1030, 1278
PstNI CAGNNNCTG 1 cut(s) 185
PsuI RGATCY 1 cut(s) 115
RsaI GTAC 5 cut(s) 676, 914, 926, 1071, 1085
RsaNI GTAC 5 cut(s) 675, 913, 925, 1070, 1084
RseI CAYNNNNRTG 1 cut(s) 1394
SacI GAGCTC 1 cut(s) 641
SaqAI TTAA 3 cut(s) 371, 606, 1402
Sau3AI GATC 4 cut(s) 115, 153, 316, 1318
Sau96I GGNCC 4 cut(s) 433, 949, 1030, 1278
ScaI AGTACT 1 cut(s) 914
SchI GAGTC 1 cut(s) 18
ScrFI CCNGG 4 cut(s) 208, 773, 969, 1039
SduI GDGCHC 4 cut(s) 480, 641, 939, 1391
SfaNI GCATC 5 cut(s) 110, 126, 546, 715, 1002
SfuI TTCGAA 1 cut(s) 1123
SinI GGWCC 3 cut(s) 949, 1030, 1278
SmiMI CAYNNNNRTG 1 cut(s) 1394
SmlI CTYRAG 7 cut(s) 69, 140, 560, 578, 755, 869, 1061
SmoI CTYRAG 7 cut(s) 69, 140, 560, 578, 755, 869, 1061
SseBI AGGCCT 1 cut(s) 200
SsiI CCGC 2 cut(s) 800, 887
SspMI CTAG 3 cut(s) 437, 569, 678
SstI GAGCTC 1 cut(s) 641
StuI AGGCCT 1 cut(s) 200
StyD4I CCNGG 4 cut(s) 206, 771, 967, 1037
TaaI ACNGT 1 cut(s) 1361
TaiI ACGT 1 cut(s) 1275
TaqI TCGA 4 cut(s) 7, 174, 691, 1123
TaqII GACCGA 1 cut(s) 211
TatI WGTACW 3 cut(s) 912, 1069, 1083
TfiI GAWTC 1 cut(s) 500
Tru1I TTAA 3 cut(s) 371, 606, 1402
Tru9I TTAA 3 cut(s) 371, 606, 1402
TscAI CASTG 3 cut(s) 946, 992, 1366
TseFI GTSAC 2 cut(s) 750, 818
Tsp45I GTSAC 2 cut(s) 750, 818
TspDTI ATGAA 2 cut(s) 209, 456
TspGWI ACGGA 1 cut(s) 906
TspRI CASTG 3 cut(s) 946, 992, 1366
Van91I CCANNNNNTGG 1 cut(s) 778
VpaK11BI GGWCC 3 cut(s) 949, 1030, 1278
XagI CCTNNNNNAGG 1 cut(s) 1326
XapI RAATTY 4 cut(s) 234, 656, 837, 851
XceI RCATGY 2 cut(s) 30, 281
XcmI CCANNNNNNNNNTGG 3 cut(s) 247, 838, 1024
XmnI GAANNNNTTC 2 cut(s) 170, 851
XspI CTAG 3 cut(s) 437, 569, 678
ZrmI AGTACT 1 cut(s) 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.