Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001736

Physical Location & Seq

Genomic Coordinates Reverse (-)

31337464 .. 31347182

Gene Structure 9719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG268100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2742 bp

ATGGTTCGAGTCTCAATTCTTGTAACATGTGTCATCTCTCTAATGTTTGTGTTCTTGACAGACCATGCTCAAGGTTTAGGTGTCAACTGGGGAGCAATGGCATCGCACCCTATGGATCCCAGCAATGTAGTAAAGATGCTCAAGGACAATGGGATCAAGAAAGTGAAGCTTTTCGACGCAGAGCCTGCCACCATGAAGGCCTTGTCCGGGTCAGGTATTTCGGTCATTGTTGGAATTCCCAATGACAAGTTGGCCTCAATTTCTTCAGCTTACAAACATGCCCAAAAATGGGTGAAAGAAAACATCACCAAATATGATCATAATGGGGGCGTTGATATCAGCTATGTGGCTGTTGGAAACGAGCCATTCTTAACCAGTTACAATGGGAGTTTTTACAAGACTACTTTTCCAGCATTGCAAAACATTCAAAAGGCCCTAGATGAAGCTGGCACCAGACAGAAAATCAAAGCCATAGTGCCCTTCAATGCCGATGTTTACGAATCTGCTTCGGGCAAACCATCGGAAGGTCAGTTCCGAAAAGACATCAAGAGTGAGATGCTCAAGATACTAGGTTTGCTCAAGAGCAATAAGTCTCCATTTTTCGTTAACATATATCCCTTCCTTAGTCTCCAACAGAGCTCTCATTTCCCCAAAGAATTTGCATTCTTTGATGGTACTAGCAAACCTGTTCGAGACAACAACCACGAATATACCAATGTGTTTGATGCAAATCATGACACACTTATTTGGTCACTCAAGAAGGTTGGCTACCAGGACTTGGACATAGTTATTGGAGAAGCGGGATGGCCTACCGATGGTGACAAGAATGCCAATAAAATTTTGGCGAAGAAATTCTATGATGGACTTCTCAAGAAATTAGCGAAGGCGGACGGAACCCCTCTTCGAAAAGAGTACTTGGAAGTGTACCTTTTTGGGCTCACTGACGAGGACCAAAAAAGTATTGCCCCAGGGGACTTTGAGCGCCACTGGGGCATCTTAGGCTATGATGGAAAACCCAAGTTCCCAATGGACCTCACCGGGAAAGGGAACAATAAAATGCTCAAGGCTGTACAAGGAGTGGAGTACATGGAGAAGCAATGGTGTGTCTTGAACAGCGATGTTCGAAATGGCAGTATTTTACAAACCGAACTCAATTACGCTTGTTCCCAGACAGATTGCACATCTTTAGGAGGTGGAAGGTCATGCGATTTGGATTTGCAAGGGAAAGTCTCCTATGCTTTCAATTCTTTCTTCCAAAGCAGAGACCAAGACGTTCGGACCTGCAATTTTGATGGCAAGGGAACGGTTACAAAAGACGATCCTTCTAAAGGAACTTGCGTATTCAATATACAGATTTACAGTGCTGGAGTGAGGCATCAAGTGACTTATGCATTGAAAAAGCAACTCAATAGAGGGCACCCATATGTCTTAAGCGGATTGTGCAGGCGCAAGTACGAGTATTTCAAGTCATACGAAGTTGAAGATGAGATCTTCTTGCCTAATTTGATTGTTGTTCGAATTGATGGCTGTGATTTTCGAAGGTTTGCAGAAATGCATGATGACGAGTACAGCTTTGTCTTCAAGAAGACGTCCAAGTTTCACCAGAGGCGTGCCAGCAAAGTAGAGTCTATTATAGTATCTTTCTTCAGCTCAGTATATTCTTATCTTTTGTGGCGACAAAATGATTGTCATACAAATAACCTGTGTAATACTTGCCTATGGGAGCTAATAATTAAAGGTGGAAAGACTGAAAGCGAAGCACTAGAGTTACTAGAGGGCACCAGTAAAGAAGAGAAAAACAACCTTCTTTTTGAAAAGTTTGAGATCAATTACCAAAAGTTAAATGAAATGTTTTATCAAGGTTCCTGCATTTTGAAAACTGAGGTGATTGACGTAGTAAAGCACAATGAGAATGGCTCTCCTGTCCGGAGACTTAGGAAAAAGTTAAGAATAGTCCATTCAAAGAATATAGCGGGGATAAGCTTTTGGAACAATCACAAATGTCTTCGGAATGAGCTCAGTGGCTTCTCTAAGGACATTGCAAAAGTTGAACCAGATTTTCTCAAATCCTTCCAGTTTGAAAAAAGATTGATGCCATCGACTTGGATTGTCATTAGAATTGATGGTTGCCATTTCCACAGGTTTTCTGATGTTCATGAATTTGTGAAGCCAAATGATGATCAGGCTCTCAAGCTTATGAATTCATGTGCAGTGGCTGTGGTAAAAGAGTTTCAAGACACAGTGTTTGCCTATGGCGTCAGTGATGAATACAGCTTTGTATTGAAGAAAGACTCTCAGTTCTATCAAAGGCGAGCAAGTAAAATAGTATCTGTCATGGTGCTCTTTACTTCCATGTACACAATGAAATGGAAAGATTTCTTCCCTGAGAGAGATTTGAAGTACCCTCCTTATTTTGATGGCCGCTCTGTATGCTATCCATCATCCGAAATTCTTCGAGATTATCTGGCGTGGAGACAAGTTGATTGCCATATCAACAATCAATACAATACTTGTTTTTGGCAGCTTGTTAAGTCCGGAAAGAGCAAAAGTGAAGCCCAGAATTTTCTGAAGGGTACTCTAGCAGGTGACAAAGATAAACTGCTCAAGCAATTCGGTATTGACTACAGCAAATTGCCTGTCATGTTCCGCCAAGGTTCCTCCTCTTTCTGGGACAAGGGAGACATTATAATGATAAACAACAACAAGCCATCTGATGAAAATTCTCAGAACAAAGCCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000166 GO:0000278 GO:0000287 GO:0000966 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008033 GO:0008144 GO:0008150 GO:0008152 GO:0008192 GO:0008193 GO:0008283 GO:0009451 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0017076 GO:0019001 GO:0022402 GO:0022607 GO:0030554 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032559 GO:0032561 GO:0033554 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0046483 GO:0046872 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051716 GO:0065003 GO:0070013 GO:0070568 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097367 GO:0099116 GO:1901265 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thg1 Thg1C

Protein Analysis

913

Amino Acids

104.27

Weight (kDa)

8.81

Isoelectric Point (pI)

37.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	26 - 344	8e-61	Glycosyl hydrolases family 17
X8	PF07983	366 - 435	2.3e-13	X8 domain
Thg1	PF04446	520 - 559	2.2e-07	tRNAHis guanylyltransferase
Thg1C	PF14413	552 - 635	9e-28	Thg1 C terminal domain
Thg1	PF04446	687 - 813	6.9e-50	tRNAHis guanylyltransferase
Thg1C	PF14413	817 - 909	2.1e-32	Thg1 C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64790
fragaria_vesca	FvH4_1g22980 FvH4_1g22990
malus_domestica	MD01G1021100.v1.1 MD01G1021200.v1.1 MD15G1330800.v1.1 MD15G1330900.v1.1
prunus_persica	Prupe.6G168700_v2.0.a1 Prupe.6G168800_v2.0.a1
pyrus_communis	pycom01g05030 pycom15g29440
rosa_chinensis	RchiOBHm_Chr2g0117511 RchiOBHm_Chr2g0117521 RchiOBHm_Chr2g0117531
rosa_laevigata	RLG00000018351 RLG00000018352 RLG00000018353
rosa_multiflora	Rmu_co8432351.1_g000001 Rmu_sc0001617.1_g000014 Rmu_sc0003454.1_g000003 Rmu_sc0003454.1_g000004 Rmu_sc0003454.1_g000018 Rmu_sc0022810.1_g000001 Rmu_sc0039255.1_g000002
rosa_roxburghii	Rroxscaffold_2G00126440 Rroxscaffold_2G00126450 Rroxscaffold_2G00126480
rosa_rugosa	Rorug02G0212800 Rorug02G0212900 Rorug02G0213000
rosa_samantha	Rh2AG268100 Rh2AG268300 Rh2AG268400 Rh2BG280500 Rh2BG280700 Rh2BG280800 Rh2CG271500 Rh2CG271600 Rh2CG271700 Rh2DG275300 Rh2DG275500 Rh2DG275600 Rh2DG294800 Rh2DG295000 Rh2DG295100
rosa_wichuraiana	Rw2G021220 Rw2G021230 Rw2G021240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2687
AarI	CACCTGC	1 cut(s)	2573
AatII	GACGTC	1 cut(s)	1592
Acc36I	ACCTGC	2 cut(s)	1289, 2573
AccB1I	GGYRCC	3 cut(s)	449, 1416, 1778
AccB7I	CCANNNNNTGG	1 cut(s)	778
AccBSI	CCGCTC	1 cut(s)	2424
AccIII	TCCGGA	2 cut(s)	1926, 2534
AciI	CCGC	6 cut(s)	800, 887, 1434, 1973, 2422, 2647
AclWI	GGATC	4 cut(s)	110, 123, 161, 1313
AcoI	YGGCCR	1 cut(s)	2419
AcsI	RAATTY	9 cut(s)	234, 656, 837, 851, 2159, 2200, 2448, 2560, 2719
AcuI	CTGAAG	3 cut(s)	249, 1630, 2588
AcyI	GRCGYC	2 cut(s)	1589, 2256
AfiI	CCNNNNNNNGG	9 cut(s)	207, 288, 289, 524, 778, 815, 1044, 1328, 2667
AflII	CTTAAG	1 cut(s)	1429
AflIII	ACRYGT	1 cut(s)	26
AjnI	CCWGG	2 cut(s)	771, 967
AloI	GAACNNNNNNTCC	2 cut(s)	515, 547
Alw21I	GWGCWC	3 cut(s)	641, 2019, 2343
Alw26I	GTCTC	9 cut(s)	16, 597, 632, 687, 1234, 1257, 1924, 2467, 2673
AlwI	GGATC	4 cut(s)	110, 123, 161, 1313
AlwNI	CAGNNNCTG	2 cut(s)	185, 2216
Aor13HI	TCCGGA	2 cut(s)	1926, 2534
AoxI	GGCC	5 cut(s)	198, 252, 432, 806, 2419
ApeKI	GCWGC	1 cut(s)	2521
ApoI	RAATTY	9 cut(s)	234, 656, 837, 851, 2159, 2200, 2448, 2560, 2719
ArsI	GACNNNNNNTTYG	6 cut(s)	1672, 1704, 2228, 2260, 2622, 2654
Asp700I	GAANNNNTTC	4 cut(s)	170, 851, 2375, 2451
AspLEI	GCGC	2 cut(s)	984, 1449
AspS9I	GGNCC	4 cut(s)	433, 949, 1030, 1278
AsuC2I	CCSGG	2 cut(s)	208, 1039
AsuHPI	GGTGA	7 cut(s)	298, 304, 830, 1027, 1592, 1897, 2597
AsuII	TTCGAA	4 cut(s)	904, 1123, 1516, 1537
AvaII	GGWCC	3 cut(s)	949, 1030, 1278
BaeGI	GKGCMC	3 cut(s)	480, 1419, 1781
BamHI	GGATCC	1 cut(s)	115
BanI	GGYRCC	3 cut(s)	449, 1416, 1778
BanII	GRGCYC	3 cut(s)	641, 939, 2019
BarI	GAAGNNNNNNTAC	2 cut(s)	752, 784
BbsI	GAAGAC	3 cut(s)	1570, 1592, 1997
Bbv12I	GWGCWC	3 cut(s)	641, 2019, 2343
BbvI	GCAGC	1 cut(s)	2533
BcgI	CGANNNNNNTGC	2 cut(s)	84, 118
BciT130I	CCWGG	2 cut(s)	773, 969
BclI	TGATCA	2 cut(s)	316, 2179
BcnI	CCSGG	2 cut(s)	208, 1039
BcoDI	GTCTC	9 cut(s)	16, 597, 632, 687, 1234, 1257, 1924, 2467, 2673
BfaI	CTAG	6 cut(s)	437, 569, 678, 1763, 1772, 2579
BfmI	CTRYAG	1 cut(s)	2623
BfoI	RGCGCY	1 cut(s)	985
BfrI	CTTAAG	1 cut(s)	1429
BfuAI	ACCTGC	2 cut(s)	1289, 2573
BglI	GCCNNNNNGGC	1 cut(s)	990
BglII	AGATCT	1 cut(s)	1488
BisI	GCNGC	2 cut(s)	2422, 2522
BlsI	GCNGC	2 cut(s)	2423, 2523
BmcAI	AGTACT	1 cut(s)	914
Bme1390I	CCNGG	4 cut(s)	208, 773, 969, 1039
Bme18I	GGWCC	3 cut(s)	949, 1030, 1278
BmgT120I	GGNCC	4 cut(s)	433, 949, 1030, 1278
BmiI	GGNNCC	7 cut(s)	117, 451, 895, 1418, 1780, 1864, 2656
BmrFI	CCNGG	4 cut(s)	208, 773, 969, 1039
BmrI	ACTGGG	2 cut(s)	97, 997
BmsI	GCATC	7 cut(s)	110, 126, 546, 715, 1002, 1384, 2082
BmuI	ACTGGG	2 cut(s)	97, 997
BpiI	GAAGAC	3 cut(s)	1570, 1592, 1997
BplI	GAGNNNNNCTC	2 cut(s)	1901, 1933
BpmI	CTGGAG	1 cut(s)	1386
Bpu14I	TTCGAA	4 cut(s)	904, 1123, 1516, 1537
BpuEI	CTTGAG	9 cut(s)	54, 125, 545, 563, 740, 854, 1046, 2174, 2588
BpuMI	CCSGG	2 cut(s)	208, 1039
BsaBI	GATNNNNATC	1 cut(s)	729
BsaHI	GRCGYC	2 cut(s)	1589, 2256
BsaI	GGTCTC	1 cut(s)	1257
BsaJI	CCNNGG	3 cut(s)	967, 968, 2650
BsaWI	WCCGGW	2 cut(s)	1926, 2534
Bsc4I	CCNNNNNNNGG	9 cut(s)	207, 288, 289, 524, 778, 815, 1044, 1328, 2667
Bse1I	ACTGG	5 cut(s)	92, 375, 992, 1782, 2074
Bse3DI	GCAATG	5 cut(s)	102, 130, 413, 1103, 2037
Bse8I	GATNNNNATC	1 cut(s)	729
BseAI	TCCGGA	2 cut(s)	1926, 2534
BseBI	CCWGG	2 cut(s)	773, 969
BseDI	CCNNGG	3 cut(s)	967, 968, 2650
BseGI	GGATG	2 cut(s)	809, 2441
BseJI	GATNNNNATC	1 cut(s)	729
BseLI	CCNNNNNNNGG	9 cut(s)	207, 288, 289, 524, 778, 815, 1044, 1328, 2667
BseMI	GCAATG	5 cut(s)	102, 130, 413, 1103, 2037
BseMII	CTCAG	6 cut(s)	1665, 1872, 2032, 2309, 2376, 2738
BseNI	ACTGG	5 cut(s)	92, 375, 992, 1782, 2074
BseRI	GAGGAG	1 cut(s)	2650
BseSI	GKGCMC	3 cut(s)	480, 1419, 1781
BseXI	GCAGC	1 cut(s)	2533
BseYI	CCCAGC	1 cut(s)	119
BsgI	GTGCAG	2 cut(s)	1462, 2229
BshFI	GGCC	5 cut(s)	200, 254, 434, 808, 2421
BshNI	GGYRCC	3 cut(s)	449, 1416, 1778
BsiHKAI	GWGCWC	3 cut(s)	641, 2019, 2343
BsiSI	CCGG	4 cut(s)	207, 1038, 1927, 2535
BslFI	GGGAC	2 cut(s)	986, 2684
BslI	CCNNNNNNNGG	9 cut(s)	207, 288, 289, 524, 778, 815, 1044, 1328, 2667
BsmAI	GTCTC	9 cut(s)	16, 597, 632, 687, 1234, 1257, 1924, 2467, 2673
BsmFI	GGGAC	2 cut(s)	986, 2684
BsmI	GAATGC	2 cut(s)	662, 832
BsnI	GGCC	5 cut(s)	200, 254, 434, 808, 2421
Bso31I	GGTCTC	1 cut(s)	1257
Bsp119I	TTCGAA	4 cut(s)	904, 1123, 1516, 1537
Bsp1286I	GDGCHC	7 cut(s)	480, 641, 939, 1419, 1781, 2019, 2343
Bsp13I	TCCGGA	2 cut(s)	1926, 2534
Bsp1407I	TGTACA	2 cut(s)	1069, 2355
Bsp143I	GATC	7 cut(s)	115, 153, 316, 1318, 1488, 1824, 2179
BspACI	CCGC	6 cut(s)	800, 887, 1434, 1973, 2422, 2647
BspANI	GGCC	5 cut(s)	200, 254, 434, 808, 2421
BspCNI	CTCAG	6 cut(s)	1664, 1873, 2031, 2308, 2377, 2737
BspEI	TCCGGA	2 cut(s)	1926, 2534
BspHI	TCATGA	2 cut(s)	733, 2155
BspLI	GGNNCC	7 cut(s)	117, 451, 895, 1418, 1780, 1864, 2656
BspMI	ACCTGC	2 cut(s)	1289, 2573
BspPI	GGATC	4 cut(s)	110, 123, 161, 1313
BspT104I	TTCGAA	4 cut(s)	904, 1123, 1516, 1537
BspT107I	GGYRCC	3 cut(s)	449, 1416, 1778
BspTI	CTTAAG	1 cut(s)	1429
BspTNI	GGTCTC	1 cut(s)	1257
BsrBI	CCGCTC	1 cut(s)	2424
BsrDI	GCAATG	5 cut(s)	102, 130, 413, 1103, 2037
BsrGI	TGTACA	2 cut(s)	1069, 2355
BsrI	ACTGG	5 cut(s)	92, 375, 992, 1782, 2074
BssECI	CCNNGG	3 cut(s)	967, 968, 2650
BssMI	GATC	7 cut(s)	115, 153, 316, 1318, 1488, 1824, 2179
BssNI	GRCGYC	2 cut(s)	1589, 2256
BssT1I	CCWWGG	1 cut(s)	2650
Bst2UI	CCWGG	2 cut(s)	773, 969
Bst4CI	ACNGT	3 cut(s)	1306, 1361, 2242
Bst6I	CTCTTC	2 cut(s)	906, 1785
BstACI	GRCGYC	2 cut(s)	1589, 2256
BstAFI	CTTAAG	1 cut(s)	1429
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstAUI	TGTACA	2 cut(s)	1069, 2355
BstBI	TTCGAA	4 cut(s)	904, 1123, 1516, 1537
BstC8I	GCNNGC	6 cut(s)	186, 448, 1445, 1611, 1615, 2313
BstENI	CCTNNNNNAGG	1 cut(s)	1326
BstF5I	GGATG	2 cut(s)	809, 2441
BstH2I	RGCGCY	1 cut(s)	985
BstHHI	GCGC	2 cut(s)	984, 1449
BstKTI	GATC	7 cut(s)	118, 156, 319, 1321, 1491, 1827, 2182
BstMAI	GTCTC	9 cut(s)	16, 597, 632, 687, 1234, 1257, 1924, 2467, 2673
BstMBI	GATC	7 cut(s)	115, 153, 316, 1318, 1488, 1824, 2179
BstMWI	GCNNNNNNNGC	5 cut(s)	185, 990, 999, 1440, 2430
BstNI	CCWGG	2 cut(s)	773, 969
BstNSI	RCATGY	2 cut(s)	30, 281
BstSCI	CCNGG	4 cut(s)	206, 771, 967, 1037
BstSFI	CTRYAG	1 cut(s)	2623
BstSLI	GKGCMC	3 cut(s)	480, 1419, 1781
BstV1I	GCAGC	1 cut(s)	2533
BstV2I	GAAGAC	3 cut(s)	1570, 1592, 1997
BstX2I	RGATCY	2 cut(s)	115, 1488
BstXI	CCANNNNNNTGG	1 cut(s)	2103
BstYI	RGATCY	2 cut(s)	115, 1488
BsuRI	GGCC	5 cut(s)	200, 254, 434, 808, 2421
BtgZI	GCGATG	2 cut(s)	87, 1131
BtsCI	GGATG	2 cut(s)	809, 2441
BtsI	GCAGTG	1 cut(s)	2217
BtsIMutI	CAGTG	7 cut(s)	939, 985, 1366, 2026, 2217, 2247, 2266
BveI	ACCTGC	2 cut(s)	1289, 2573
Cac8I	GCNNGC	6 cut(s)	186, 448, 1445, 1611, 1615, 2313
CaiI	CAGNNNCTG	2 cut(s)	185, 2216
CciI	TCATGA	2 cut(s)	733, 2155
CfoI	GCGC	2 cut(s)	984, 1449
Cfr13I	GGNCC	4 cut(s)	433, 949, 1030, 1278
CseI	GACGC	2 cut(s)	185, 2245
DpnI	GATC	7 cut(s)	117, 155, 318, 1320, 1490, 1826, 2181
DpnII	GATC	7 cut(s)	115, 153, 316, 1318, 1488, 1824, 2179
EaeI	YGGCCR	1 cut(s)	2419
Eam1104I	CTCTTC	2 cut(s)	906, 1785
EarI	CTCTTC	2 cut(s)	906, 1785
EciI	GGCGGA	2 cut(s)	902, 2636
Ecl136II	GAGCTC	2 cut(s)	639, 2017
Eco130I	CCWWGG	1 cut(s)	2650
Eco147I	AGGCCT	1 cut(s)	200
Eco24I	GRGCYC	3 cut(s)	641, 939, 2019
Eco31I	GGTCTC	1 cut(s)	1257
Eco32I	GATATC	1 cut(s)	337
Eco47I	GGWCC	3 cut(s)	949, 1030, 1278
Eco53kI	GAGCTC	2 cut(s)	639, 2017
Eco57I	CTGAAG	3 cut(s)	249, 1630, 2588
EcoICRI	GAGCTC	2 cut(s)	639, 2017
EcoNI	CCTNNNNNAGG	1 cut(s)	1326
EcoO109I	RGGNCCY	1 cut(s)	433
EcoRI	GAATTC	2 cut(s)	234, 2200
EcoRII	CCWGG	2 cut(s)	771, 967
EcoRV	GATATC	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	2650
EcoT22I	ATGCAT	2 cut(s)	1393, 1557
EcoT38I	GRGCYC	3 cut(s)	641, 939, 2019
ErhI	CCWWGG	1 cut(s)	2650
FalI	AAGNNNNNCTT	4 cut(s)	153, 185, 912, 944
FaqI	GGGAC	2 cut(s)	986, 2684
FauI	CCCGC	2 cut(s)	793, 1966
FauNDI	CATATG	1 cut(s)	1423
FbaI	TGATCA	2 cut(s)	316, 2179
Fnu4HI	GCNGC	2 cut(s)	2422, 2522
FokI	GGATG	2 cut(s)	816, 2428
FriOI	GRGCYC	3 cut(s)	641, 939, 2019
Fsp4HI	GCNGC	2 cut(s)	2422, 2522
FspBI	CTAG	6 cut(s)	437, 569, 678, 1763, 1772, 2579
GlaI	GCGC	2 cut(s)	983, 1448
GluI	GCNGC	2 cut(s)	2422, 2522
GsaI	CCCAGC	1 cut(s)	123
GsuI	CTGGAG	1 cut(s)	1386
HaeII	RGCGCY	1 cut(s)	985
HaeIII	GGCC	5 cut(s)	200, 254, 434, 808, 2421
HapII	CCGG	4 cut(s)	207, 1038, 1927, 2535
HgaI	GACGC	2 cut(s)	185, 2245
HhaI	GCGC	2 cut(s)	984, 1449
Hin1I	GRCGYC	2 cut(s)	1589, 2256
Hin6I	GCGC	2 cut(s)	982, 1447
HinP1I	GCGC	2 cut(s)	982, 1447
HincII	GTYRAC	2 cut(s)	85, 607
HindII	GTYRAC	2 cut(s)	85, 607
HindIII	AAGCTT	3 cut(s)	167, 1981, 2192
HinfI	GANTC	4 cut(s)	9, 500, 1625, 2291
HpaI	GTTAAC	1 cut(s)	607
HpaII	CCGG	4 cut(s)	207, 1038, 1927, 2535
HphI	GGTGA	7 cut(s)	298, 304, 830, 1027, 1592, 1897, 2597
Hpy166II	GTNNAC	5 cut(s)	85, 496, 607, 925, 2358
Hpy8I	GTNNAC	5 cut(s)	85, 496, 607, 925, 2358
Hpy99I	CGWCG	1 cut(s)	179
HpyCH4III	ACNGT	3 cut(s)	1306, 1361, 2242
HpyCH4IV	ACGT	3 cut(s)	1272, 1589, 1893
HpyF10VI	GCNNNNNNNGC	5 cut(s)	185, 990, 999, 1440, 2430
HpySE526I	ACGT	3 cut(s)	1272, 1589, 1893
Hsp92I	GRCGYC	2 cut(s)	1589, 2256
HspAI	GCGC	2 cut(s)	982, 1447
Kpn2I	TCCGGA	2 cut(s)	1926, 2534
Ksp22I	TGATCA	2 cut(s)	316, 2179
KspAI	GTTAAC	1 cut(s)	607
Kzo9I	GATC	7 cut(s)	115, 153, 316, 1318, 1488, 1824, 2179
LmnI	GCTCC	2 cut(s)	92, 1723
Lsp1109I	GCAGC	1 cut(s)	2533
LweI	GCATC	7 cut(s)	110, 126, 546, 715, 1002, 1384, 2082
MaeI	CTAG	6 cut(s)	437, 569, 678, 1763, 1772, 2579
MaeII	ACGT	3 cut(s)	1272, 1589, 1893
MaeIII	GTNAC	8 cut(s)	22, 377, 750, 818, 1306, 1381, 1767, 2585
MalI	GATC	7 cut(s)	117, 155, 318, 1320, 1490, 1826, 2181
MbiI	CCGCTC	1 cut(s)	2424
MboI	GATC	7 cut(s)	115, 153, 316, 1318, 1488, 1824, 2179
MflI	RGATCY	2 cut(s)	115, 1488
MhlI	GDGCHC	7 cut(s)	480, 641, 939, 1419, 1781, 2019, 2343
MlyI	GAGTC	3 cut(s)	18, 1634, 2285
MmeI	TCCRAC	3 cut(s)	211, 334, 655
Mph1103I	ATGCAT	2 cut(s)	1393, 1557
MroI	TCCGGA	2 cut(s)	1926, 2534
MroXI	GAANNNNTTC	4 cut(s)	170, 851, 2375, 2451
MseI	TTAA	7 cut(s)	371, 606, 1430, 1734, 1841, 1946, 2529
MslI	CAYNNNNRTG	2 cut(s)	1422, 2687
MspCI	CTTAAG	1 cut(s)	1429
MspI	CCGG	4 cut(s)	207, 1038, 1927, 2535
MspR9I	CCNGG	4 cut(s)	208, 773, 969, 1039
Mva1269I	GAATGC	2 cut(s)	662, 832
MvaI	CCWGG	2 cut(s)	773, 969
MwoI	GCNNNNNNNGC	5 cut(s)	185, 990, 999, 1440, 2430
NciI	CCSGG	2 cut(s)	208, 1039
NdeI	CATATG	1 cut(s)	1423
NdeII	GATC	7 cut(s)	115, 153, 316, 1318, 1488, 1824, 2179
NlaIV	GGNNCC	7 cut(s)	117, 451, 895, 1418, 1780, 1864, 2656
NmuCI	GTSAC	4 cut(s)	750, 818, 1381, 2585
NsiI	ATGCAT	2 cut(s)	1393, 1557
NspI	RCATGY	2 cut(s)	30, 281
NspV	TTCGAA	4 cut(s)	904, 1123, 1516, 1537
PagI	TCATGA	2 cut(s)	733, 2155
PaqCI	CACCTGC	1 cut(s)	2573
PasI	CCCWGGG	1 cut(s)	968
PceI	AGGCCT	1 cut(s)	200
PciI	ACATGT	1 cut(s)	26
PctI	GAATGC	2 cut(s)	662, 832
PdmI	GAANNNNTTC	4 cut(s)	170, 851, 2375, 2451
PfeI	GAWTC	1 cut(s)	500
PflMI	CCANNNNNTGG	1 cut(s)	778
PkrI	GCNGC	2 cut(s)	2423, 2523
PleI	GAGTC	3 cut(s)	17, 1633, 2285
PpsI	GAGTC	3 cut(s)	17, 1633, 2285
PscI	ACATGT	1 cut(s)	26
PsiI	TTATAA	1 cut(s)	2687
Psp124BI	GAGCTC	2 cut(s)	641, 2019
Psp6I	CCWGG	2 cut(s)	771, 967
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	2 cut(s)	771, 967
PspN4I	GGNNCC	7 cut(s)	117, 451, 895, 1418, 1780, 1864, 2656
PspPI	GGNCC	4 cut(s)	433, 949, 1030, 1278
PstNI	CAGNNNCTG	2 cut(s)	185, 2216
PsuI	RGATCY	2 cut(s)	115, 1488
RseI	CAYNNNNRTG	2 cut(s)	1422, 2687
SacI	GAGCTC	2 cut(s)	641, 2019
SaqAI	TTAA	7 cut(s)	371, 606, 1430, 1734, 1841, 1946, 2529
SatI	GCNGC	2 cut(s)	2422, 2522
Sau3AI	GATC	7 cut(s)	115, 153, 316, 1318, 1488, 1824, 2179
Sau96I	GGNCC	4 cut(s)	433, 949, 1030, 1278
ScaI	AGTACT	1 cut(s)	914
SchI	GAGTC	3 cut(s)	18, 1634, 2285
ScrFI	CCNGG	4 cut(s)	208, 773, 969, 1039
SduI	GDGCHC	7 cut(s)	480, 641, 939, 1419, 1781, 2019, 2343
SfaNI	GCATC	7 cut(s)	110, 126, 546, 715, 1002, 1384, 2082
SfcI	CTRYAG	1 cut(s)	2623
SfuI	TTCGAA	4 cut(s)	904, 1123, 1516, 1537
SinI	GGWCC	3 cut(s)	949, 1030, 1278
SmiMI	CAYNNNNRTG	2 cut(s)	1422, 2687
SseBI	AGGCCT	1 cut(s)	200
SsiI	CCGC	6 cut(s)	800, 887, 1434, 1973, 2422, 2647
SspMI	CTAG	6 cut(s)	437, 569, 678, 1763, 1772, 2579
SstI	GAGCTC	2 cut(s)	641, 2019
StuI	AGGCCT	1 cut(s)	200
StyD4I	CCNGG	4 cut(s)	206, 771, 967, 1037
StyI	CCWWGG	1 cut(s)	2650
TaaI	ACNGT	3 cut(s)	1306, 1361, 2242
TaiI	ACGT	3 cut(s)	1275, 1592, 1896
TaqI	TCGA	9 cut(s)	7, 174, 691, 904, 1123, 1516, 1537, 2099, 2455
TaqII	GACCGA	1 cut(s)	211
TatI	WGTACW	5 cut(s)	912, 1069, 1083, 1566, 2355
TauI	GCSGC	1 cut(s)	2424
TfiI	GAWTC	1 cut(s)	500
Tru1I	TTAA	7 cut(s)	371, 606, 1430, 1734, 1841, 1946, 2529
Tru9I	TTAA	7 cut(s)	371, 606, 1430, 1734, 1841, 1946, 2529
TscAI	CASTG	7 cut(s)	946, 992, 1366, 2026, 2217, 2247, 2266
TseFI	GTSAC	4 cut(s)	750, 818, 1381, 2585
TseI	GCWGC	1 cut(s)	2521
Tsp45I	GTSAC	4 cut(s)	750, 818, 1381, 2585
TspGWI	ACGGA	1 cut(s)	906
TspRI	CASTG	7 cut(s)	946, 992, 1366, 2026, 2217, 2247, 2266
Van91I	CCANNNNNTGG	1 cut(s)	778
Vha464I	CTTAAG	1 cut(s)	1429
VpaK11BI	GGWCC	3 cut(s)	949, 1030, 1278
XagI	CCTNNNNNAGG	1 cut(s)	1326
XapI	RAATTY	9 cut(s)	234, 656, 837, 851, 2159, 2200, 2448, 2560, 2719
XceI	RCATGY	2 cut(s)	30, 281
XcmI	CCANNNNNNNNNTGG	3 cut(s)	247, 838, 1024
XmnI	GAANNNNTTC	4 cut(s)	170, 851, 2375, 2451
XspI	CTAG	6 cut(s)	437, 569, 678, 1763, 1772, 2579
ZraI	GACGTC	1 cut(s)	1590
ZrmI	AGTACT	1 cut(s)	914
Zsp2I	ATGCAT	2 cut(s)	1393, 1557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.