Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001736

Physical Location & Seq

Genomic Coordinates Reverse (-)

8404352 .. 8406096

Gene Structure 1745 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1021100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCTATCGGGAACAAGCCATTCTTAACAAGTTACAACAGTACTTATGTTAAAAATGAATACCCGGCGCCATTTGTTGTCAACATTTATCCCTTCCTTAGTCTCTCCAGAAGCTTTGGCTTCCCAAAAGAATTTGCTTTCTTTGATGGTGGTGGCAAGACGGTTAGAGACAACGGTGACCCGTACAATAATGTGTTTGATGCAAATTATGATACACTTCTTTGGACGCTTAAGAAGGCAAGCGTCCCGAACTTGGATATCGTAATTGGGGAAGTAGGATGGCCTACTGATGGCCAGGACTACAGGAGTAAGAAATCGGCGAAGAAGTTTTATGATGGCCTCCTAAAAAATTGGCAAGTCAAGTGGGAACCCTTTTTAGGAAGAGCTACTTGGAAGTGTACCTATTTGGGCTCTTTGACGAGGATCAGAAAAGTGAACTTGAGCCGTGCACTAGCGGAATTCAATTACGCATGCACTTGGGCAGACTGCACAAGCTTGGGAGGGAAGAGGTCGTGTGACTTGGAAATGCATGATAGAATCTCTTATGCTTTCAATGAGTTCTACCAAAACGGAGACCAAGATGTACGGAAATGCAATTTCAGAGGCATGGGAAAGAAGGTAACACGAGATCCCTCTCAAGGAGATTGTCTATTCCGTATACAGATTGATTTATTATTTGTTGCCGGATGGAGGCACGCCCTAGGTTGTGCATCTACATTATTGTTTTTCATCATTGCCTTCTTCACATTATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009664 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048046 GO:0055044 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

252

Amino Acids

28.74

Weight (kDa)

9.08

Isoelectric Point (pI)

42.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	19 - 119	2.5e-14	Glycosyl hydrolases family 17
X8	PF07983	147 - 204	5.2e-09	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64790
fragaria_vesca	FvH4_1g22980 FvH4_1g22990
malus_domestica	MD01G1021100.v1.1 MD01G1021200.v1.1 MD15G1330800.v1.1 MD15G1330900.v1.1
prunus_persica	Prupe.6G168700_v2.0.a1 Prupe.6G168800_v2.0.a1
pyrus_communis	pycom01g05030 pycom15g29440
rosa_chinensis	RchiOBHm_Chr2g0117511 RchiOBHm_Chr2g0117521 RchiOBHm_Chr2g0117531
rosa_laevigata	RLG00000018351 RLG00000018352 RLG00000018353
rosa_multiflora	Rmu_co8432351.1_g000001 Rmu_sc0001617.1_g000014 Rmu_sc0003454.1_g000003 Rmu_sc0003454.1_g000004 Rmu_sc0003454.1_g000018 Rmu_sc0022810.1_g000001 Rmu_sc0039255.1_g000002
rosa_roxburghii	Rroxscaffold_2G00126440 Rroxscaffold_2G00126450 Rroxscaffold_2G00126480
rosa_rugosa	Rorug02G0212800 Rorug02G0212900 Rorug02G0213000
rosa_samantha	Rh2AG268100 Rh2AG268300 Rh2AG268400 Rh2BG280500 Rh2BG280700 Rh2BG280800 Rh2CG271500 Rh2CG271600 Rh2CG271700 Rh2DG275300 Rh2DG275500 Rh2DG275600 Rh2DG294800 Rh2DG295000 Rh2DG295100
rosa_wichuraiana	Rw2G021220 Rw2G021230 Rw2G021240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	67
AccI	GTMKAC	1 cut(s)	658
AciI	CCGC	1 cut(s)	455
AclWI	GGATC	2 cut(s)	431, 623
AcoI	YGGCCR	1 cut(s)	292
AcsI	RAATTY	2 cut(s)	131, 458
AcyI	GRCGYC	1 cut(s)	68
AfaI	GTAC	4 cut(s)	43, 185, 400, 585
AfiI	CCNNNNNNNGG	5 cut(s)	253, 290, 377, 638, 690
AflII	CTTAAG	1 cut(s)	230
AgsI	TTSAA	2 cut(s)	463, 553
AjnI	CCWGG	1 cut(s)	294
AjuI	GAANNNNNNNTTGG	2 cut(s)	373, 405
AluBI	AGCT	3 cut(s)	114, 386, 495
AluI	AGCT	3 cut(s)	114, 386, 495
Alw21I	GWGCWC	1 cut(s)	451
Alw26I	GTCTC	3 cut(s)	107, 162, 567
Alw44I	GTGCAC	1 cut(s)	447
AlwI	GGATC	2 cut(s)	431, 623
AoxI	GGCC	3 cut(s)	281, 292, 337
ApaLI	GTGCAC	1 cut(s)	447
ApoI	RAATTY	2 cut(s)	131, 458
AspA2I	CCTAGG	1 cut(s)	700
AspLEI	GCGC	1 cut(s)	70
AsuC2I	CCSGG	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	188
AvrII	CCTAGG	1 cut(s)	700
BaeGI	GKGCMC	1 cut(s)	451
BalI	TGGCCA	1 cut(s)	294
BanI	GGYRCC	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	413
BauI	CACGAG	1 cut(s)	624
Bbv12I	GWGCWC	1 cut(s)	451
BccI	CCATC	5 cut(s)	140, 273, 284, 329, 681
BceAI	ACGGC	1 cut(s)	429
BciT130I	CCWGG	1 cut(s)	296
BcnI	CCSGG	1 cut(s)	65
BcoDI	GTCTC	3 cut(s)	107, 162, 567
BfaI	CTAG	2 cut(s)	452, 701
BfmI	CTRYAG	1 cut(s)	301
BfoI	RGCGCY	1 cut(s)	71
BfrI	CTTAAG	1 cut(s)	230
BlnI	CCTAGG	1 cut(s)	700
BmcAI	AGTACT	1 cut(s)	43
Bme1390I	CCNGG	2 cut(s)	65, 296
BmiI	GGNNCC	2 cut(s)	69, 369
BmrFI	CCNGG	2 cut(s)	65, 296
BmsI	GCATC	2 cut(s)	190, 719
BpmI	CTGGAG	1 cut(s)	91
BpuEI	CTTGAG	2 cut(s)	460, 621
BpuMI	CCSGG	1 cut(s)	65
BsaHI	GRCGYC	1 cut(s)	68
BsaI	GGTCTC	1 cut(s)	567
BsaJI	CCNNGG	1 cut(s)	700
Bsc4I	CCNNNNNNNGG	5 cut(s)	253, 290, 377, 638, 690
Bse3DI	GCAATG	1 cut(s)	732
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	1 cut(s)	700
BseGI	GGATG	2 cut(s)	284, 692
BseLI	CCNNNNNNNGG	5 cut(s)	253, 290, 377, 638, 690
BseMI	GCAATG	1 cut(s)	732
BseSI	GKGCMC	1 cut(s)	451
BsgI	GTGCAG	1 cut(s)	472
BshFI	GGCC	3 cut(s)	283, 294, 339
BshNI	GGYRCC	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	451
BsiSI	CCGG	2 cut(s)	65, 684
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	5 cut(s)	253, 290, 377, 638, 690
BsmAI	GTCTC	3 cut(s)	107, 162, 567
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	3 cut(s)	283, 294, 339
Bso31I	GGTCTC	1 cut(s)	567
Bsp1286I	GDGCHC	2 cut(s)	413, 451
Bsp143I	GATC	2 cut(s)	423, 628
BspACI	CCGC	1 cut(s)	455
BspANI	GGCC	3 cut(s)	283, 294, 339
BspLI	GGNNCC	2 cut(s)	69, 369
BspPI	GGATC	2 cut(s)	431, 623
BspQI	GCTCTTC	1 cut(s)	376
BspT107I	GGYRCC	1 cut(s)	67
BspTI	CTTAAG	1 cut(s)	230
BspTNI	GGTCTC	1 cut(s)	567
BsrDI	GCAATG	1 cut(s)	732
BssECI	CCNNGG	1 cut(s)	700
BssMI	GATC	2 cut(s)	423, 628
BssNAI	GTATAC	1 cut(s)	659
BssNI	GRCGYC	1 cut(s)	68
BssSI	CACGAG	1 cut(s)	624
BssT1I	CCWWGG	1 cut(s)	700
Bst1107I	GTATAC	1 cut(s)	659
Bst2BI	CACGAG	1 cut(s)	624
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	3 cut(s)	41, 163, 176
Bst6I	CTCTTC	2 cut(s)	376, 500
BstACI	GRCGYC	1 cut(s)	68
BstAFI	CTTAAG	1 cut(s)	230
BstC8I	GCNNGC	3 cut(s)	241, 472, 696
BstDEI	CTNAG	1 cut(s)	98
BstEII	GGTNACC	1 cut(s)	176
BstF5I	GGATG	2 cut(s)	284, 692
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	2 cut(s)	426, 631
BstMAI	GTCTC	3 cut(s)	107, 162, 567
BstMBI	GATC	2 cut(s)	423, 628
BstNI	CCWGG	1 cut(s)	296
BstNSI	RCATGY	1 cut(s)	474
BstPI	GGTNACC	1 cut(s)	176
BstSCI	CCNGG	2 cut(s)	63, 294
BstSFI	CTRYAG	1 cut(s)	301
BstSLI	GKGCMC	1 cut(s)	451
BstX2I	RGATCY	1 cut(s)	628
BstYI	RGATCY	1 cut(s)	628
BstZ17I	GTATAC	1 cut(s)	659
BsuRI	GGCC	3 cut(s)	283, 294, 339
BtsCI	GGATG	2 cut(s)	284, 692
Cac8I	GCNNGC	3 cut(s)	241, 472, 696
CfoI	GCGC	1 cut(s)	70
CseI	GACGC	2 cut(s)	232, 235
Csp6I	GTAC	4 cut(s)	42, 184, 399, 584
CspCI	CAANNNNNGTGG	2 cut(s)	344, 379
CviAII	CATG	3 cut(s)	471, 530, 607
CviQI	GTAC	4 cut(s)	42, 184, 399, 584
DdeI	CTNAG	1 cut(s)	98
DinI	GGCGCC	1 cut(s)	69
DpnI	GATC	2 cut(s)	425, 630
DpnII	GATC	2 cut(s)	423, 628
EaeI	YGGCCR	1 cut(s)	292
Eam1104I	CTCTTC	2 cut(s)	376, 500
EarI	CTCTTC	2 cut(s)	376, 500
Eco130I	CCWWGG	1 cut(s)	700
Eco24I	GRGCYC	1 cut(s)	413
Eco31I	GGTCTC	1 cut(s)	567
Eco32I	GATATC	1 cut(s)	259
Eco91I	GGTNACC	1 cut(s)	176
EcoO65I	GGTNACC	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	458
EcoRII	CCWGG	1 cut(s)	294
EcoRV	GATATC	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	700
EcoT22I	ATGCAT	1 cut(s)	531
EcoT38I	GRGCYC	1 cut(s)	413
EgeI	GGCGCC	1 cut(s)	69
EheI	GGCGCC	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	700
FaeI	CATG	3 cut(s)	474, 533, 610
FaiI	YATR	8 cut(s)	48, 210, 333, 472, 531, 546, 608, 659
FalI	AAGNNNNNCTT	4 cut(s)	8, 40, 373, 405
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	3 cut(s)	470, 529, 606
FblI	GTMKAC	1 cut(s)	658
FokI	GGATG	2 cut(s)	291, 699
FriOI	GRGCYC	1 cut(s)	413
FspBI	CTAG	2 cut(s)	452, 701
GlaI	GCGC	1 cut(s)	69
GsuI	CTGGAG	1 cut(s)	91
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	3 cut(s)	283, 294, 339
HapII	CCGG	2 cut(s)	65, 684
HgaI	GACGC	2 cut(s)	232, 235
HhaI	GCGC	1 cut(s)	70
Hin1I	GRCGYC	1 cut(s)	68
Hin1II	CATG	3 cut(s)	474, 533, 610
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HindIII	AAGCTT	2 cut(s)	112, 493
HinfI	GANTC	1 cut(s)	537
HpaII	CCGG	2 cut(s)	65, 684
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	5 cut(s)	82, 399, 436, 449, 659
Hpy188I	TCNGA	2 cut(s)	428, 602
Hpy188III	TCNNGA	3 cut(s)	10, 108, 247
Hpy8I	GTNNAC	5 cut(s)	82, 399, 436, 449, 659
HpyAV	CCTTC	4 cut(s)	103, 229, 610, 748
HpyCH4III	ACNGT	3 cut(s)	41, 163, 176
HpyCH4V	TGCA	7 cut(s)	203, 449, 474, 489, 529, 594, 710
HpyF3I	CTNAG	1 cut(s)	98
Hsp92I	GRCGYC	1 cut(s)	68
Hsp92II	CATG	3 cut(s)	474, 533, 610
HspAI	GCGC	1 cut(s)	68
KasI	GGCGCC	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	423, 628
LguI	GCTCTTC	1 cut(s)	376
LpnPI	CCDG	6 cut(s)	78, 121, 281, 289, 308, 697
LweI	GCATC	2 cut(s)	190, 719
MaeI	CTAG	2 cut(s)	452, 701
MaeIII	GTNAC	4 cut(s)	32, 176, 515, 619
MalI	GATC	2 cut(s)	425, 630
MboI	GATC	2 cut(s)	423, 628
MboII	GAAGA	4 cut(s)	334, 393, 517, 733
MflI	RGATCY	1 cut(s)	628
MhlI	GDGCHC	2 cut(s)	413, 451
MlsI	TGGCCA	1 cut(s)	294
MluCI	AATT	7 cut(s)	131, 205, 264, 349, 458, 463, 595
MluNI	TGGCCA	1 cut(s)	294
Mly113I	GGCGCC	1 cut(s)	68
MnlI	CCTC	7 cut(s)	350, 414, 494, 501, 596, 643, 684
Mox20I	TGGCCA	1 cut(s)	294
Mph1103I	ATGCAT	1 cut(s)	531
MscI	TGGCCA	1 cut(s)	294
MseI	TTAA	3 cut(s)	26, 51, 231
Msp20I	TGGCCA	1 cut(s)	294
MspCI	CTTAAG	1 cut(s)	230
MspI	CCGG	2 cut(s)	65, 684
MspR9I	CCNGG	2 cut(s)	65, 296
MvaI	CCWGG	1 cut(s)	296
NarI	GGCGCC	1 cut(s)	68
NciI	CCSGG	1 cut(s)	65
NdeII	GATC	2 cut(s)	423, 628
NlaIII	CATG	3 cut(s)	474, 533, 610
NlaIV	GGNNCC	2 cut(s)	69, 369
NmuCI	GTSAC	2 cut(s)	176, 515
NsiI	ATGCAT	1 cut(s)	531
NspI	RCATGY	1 cut(s)	474
PaeI	GCATGC	1 cut(s)	474
PciSI	GCTCTTC	1 cut(s)	376
PfeI	GAWTC	1 cut(s)	537
PluTI	GGCGCC	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	294
PspEI	GGTNACC	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	2 cut(s)	69, 369
PsuI	RGATCY	1 cut(s)	628
RsaI	GTAC	4 cut(s)	43, 185, 400, 585
RsaNI	GTAC	4 cut(s)	42, 184, 399, 584
SapI	GCTCTTC	1 cut(s)	376
SaqAI	TTAA	3 cut(s)	26, 51, 231
Sau3AI	GATC	2 cut(s)	423, 628
ScaI	AGTACT	1 cut(s)	43
ScrFI	CCNGG	2 cut(s)	65, 296
SduI	GDGCHC	2 cut(s)	413, 451
SetI	ASST	7 cut(s)	116, 388, 404, 497, 512, 621, 706
SfaNI	GCATC	2 cut(s)	190, 719
SfcI	CTRYAG	1 cut(s)	301
SfoI	GGCGCC	1 cut(s)	69
SmlI	CTYRAG	3 cut(s)	230, 439, 636
SmoI	CTYRAG	3 cut(s)	230, 439, 636
SphI	GCATGC	1 cut(s)	474
Sse9I	AATT	7 cut(s)	131, 205, 264, 349, 458, 463, 595
SsiI	CCGC	1 cut(s)	455
SspDI	GGCGCC	1 cut(s)	67
SspMI	CTAG	2 cut(s)	452, 701
StyD4I	CCNGG	2 cut(s)	63, 294
StyI	CCWWGG	1 cut(s)	700
TaaI	ACNGT	3 cut(s)	41, 163, 176
TasI	AATT	7 cut(s)	131, 205, 264, 349, 458, 463, 595
TatI	WGTACW	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	537
Tru1I	TTAA	3 cut(s)	26, 51, 231
Tru9I	TTAA	3 cut(s)	26, 51, 231
TseFI	GTSAC	2 cut(s)	176, 515
Tsp45I	GTSAC	2 cut(s)	176, 515
TspDTI	ATGAA	2 cut(s)	72, 718
TspGWI	ACGGA	3 cut(s)	585, 601, 644
Vha464I	CTTAAG	1 cut(s)	230
VneI	GTGCAC	1 cut(s)	447
XapI	RAATTY	2 cut(s)	131, 458
XceI	RCATGY	1 cut(s)	474
XmaJI	CCTAGG	1 cut(s)	700
XmiI	GTMKAC	1 cut(s)	658
XspI	CTAG	2 cut(s)	452, 701
ZrmI	AGTACT	1 cut(s)	43
Zsp2I	ATGCAT	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.