Prupe.6G168700_v2.0.a1

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
17402220 .. 17404309
2090 bp
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UTR
Exon/CDS
Intron
Prupe.6G168700.1

Sequence Viewer

Length: 1437 bp
ATGGCTCGAGCCGTGTTTCTTGTATGCCTCCTCTCCATAGTAATGTCGGTGCCGACGAGCCTTGCACAAGGTTTAGGTGTCAACTGGGGTTCCATGGGGTCTCACTCTTTGCCTCCGAAAAATGTCGTTCAGATGCTTAAGGAAAACGGGATCAAAAAAGTGAAGCTTTTCGACGCTGAGCCTGATACCATGGATGCCTTGGCCGGGTCGGGTATTCAGGTCATGGTTGGAATCCCCAATGAGAAGTTGGCAAAACTTGCTGATAGCTACAAAGAGGCTCAAGAATGGGTGAAACAAAATGTAACCAGCTATCTTCGTGATGGGGGCGTCAATATCAGGTATGTGGCTGTTGGGAACGAGCCGTACTTAACAAGTTACAATGGTACTTATGTAAAAACTACTTACCCGGCACTGAAAAACATTCAAAAGGCCCTTGATGAAGCTGGCTCTGGAGGCAAAATCAAAGCCACAGTGCCCTTCAATGCTGATGTCTACGAATCTCCTTCAAACAAACCCTCAGACGGGCGTTTCCGAAAGGACATCAAGAACAACATTGTGGAGATTCTCCGCATACTTAATGACAATAGGACCCCATTTGTTGTTAACATCTACCCCTTCCTCAGTCTCTACCAGAGCTCTGATTTCCCCAAAGAATTCGCTTTCTTTGAAGGCGGTAGCGAGCCAGTTAAGGACAACAACATCGACTACAAAAATGTCTTTGATGCAAATTGTGACACGCTGATTTCTGCACTCAAAAAGGTTGGATTTGGCAACTTGGATATCATAATTGGGGAAGTAGGATGGCCTACTGATGGTGACAAAAATGCCAATGGGAAAATGGCAAAGAAGTTCTACGATGGCCTCCTCAAGAAACTGGCAACCGAAGATGGTACCCCTCTAAGGAAAAAGAAATTGGAAGTGTACCTCTTTGGTCTCTTTGATGAGAACCAGAAAAGCATTGCCCCGGGTGACTTTGAACGTCACTGGGGCATCTTTCGCTACGATGGAAAGCCTAAGTTCCCGATGGACCTCAGCGGAAAAGGGCAAGGGAACAATTTGCTTAAAGGAGTGCAAGGAGTGCAGTACTTGGACCAGCAGTGGTGCATGCTGAAGAGCGACGTTAGAAACTTGAGCAACACGCAACCGGAAGTCAGCTACGCTTGCTCCATGTCGGATTGCACAAGCTTGGGGGTTGGAAGGTCGTGCGACTTGGATCAACATGGAAATGTCTCTTATGCTTTCAATATGTACTTTCAAAATAAAGACCAAGATGTTAGGGCATGCGATTTCAATGGGATGGCTAACATTGTCAAACAAAATGCCTCAAGGGGAGATTGCCTGTTCCCGATCCAAATTTTAAATGCCGGAGTGAGGCCAGAATTGAGCATCTTTGCAGGACTATTCTTGATCCTGTTGAGCTTCTTCACCTTAATGTAA

Protein Analysis

479

Amino Acids

52.95

Weight (kDa)

7.94

Isoelectric Point (pI)

36.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 890
AccB1I GGYRCC 2 cut(s) 49, 890
AccI GTMKAC 1 cut(s) 492
AciI CCGC 3 cut(s) 568, 672, 1035
AclWI GGATC 4 cut(s) 158, 1221, 1342, 1402
AcoI YGGCCR 1 cut(s) 201
AcsI RAATTY 2 cut(s) 653, 1353
AcuI CTGAAG 1 cut(s) 1130
AcyI GRCGYC 1 cut(s) 327
AfaI GTAC 6 cut(s) 365, 385, 892, 923, 1085, 1250
AfiI CCNNNNNNNGG 6 cut(s) 204, 521, 522, 812, 900, 1371
AflII CTTAAG 1 cut(s) 137
AgsI TTSAA 8 cut(s) 425, 481, 507, 668, 977, 1243, 1256, 1291
AjuI GAANNNNNNNTTGG 2 cut(s) 896, 928
AluBI AGCT 8 cut(s) 166, 267, 309, 443, 636, 1155, 1185, 1419
AluI AGCT 8 cut(s) 166, 267, 309, 443, 636, 1155, 1185, 1419
Alw21I GWGCWC 1 cut(s) 638
Alw26I GTCTC 4 cut(s) 105, 629, 938, 1234
AlwI GGATC 4 cut(s) 158, 1221, 1342, 1402
Ama87I CYCGRG 2 cut(s) 6, 964
AoxI GGCC 5 cut(s) 201, 429, 803, 859, 1373
ApoI RAATTY 2 cut(s) 653, 1353
Asp700I GAANNNNTTC 1 cut(s) 167
Asp718I GGTACC 1 cut(s) 890
AspS9I GGNCC 4 cut(s) 430, 588, 1027, 1090
AsuC2I CCSGG 4 cut(s) 205, 407, 965, 966
AsuHPI GGTGA 4 cut(s) 301, 827, 980, 1417
AvaI CYCGRG 2 cut(s) 6, 964
AvaII GGWCC 3 cut(s) 588, 1027, 1090
BaeGI GKGCMC 1 cut(s) 477
BaeI ACNNNNGTAYC 2 cut(s) 375, 408
BanI GGYRCC 2 cut(s) 49, 890
BanII GRGCYC 1 cut(s) 638
Bbv12I GWGCWC 1 cut(s) 638
BbvCI CCTCAGC 1 cut(s) 1031
BccI CCATC 8 cut(s) 314, 795, 806, 851, 881, 998, 1018, 1291
BceAI ACGGC 1 cut(s) 346
BcnI CCSGG 4 cut(s) 205, 407, 965, 966
BcoDI GTCTC 4 cut(s) 105, 629, 938, 1234
BfrI CTTAAG 1 cut(s) 137
BlpI GCTNAGC 1 cut(s) 177
BmcAI AGTACT 1 cut(s) 1085
Bme1390I CCNGG 4 cut(s) 205, 407, 965, 966
Bme18I GGWCC 3 cut(s) 588, 1027, 1090
BmeT110I CYCGRG 2 cut(s) 6, 964
BmgT120I GGNCC 4 cut(s) 430, 588, 1027, 1090
BmiI GGNNCC 4 cut(s) 51, 91, 590, 892
BmrFI CCNGG 4 cut(s) 205, 407, 965, 966
BmrI ACTGGG 2 cut(s) 94, 994
BmsI GCATC 5 cut(s) 123, 184, 712, 999, 1395
BmuI ACTGGG 2 cut(s) 94, 994
BpmI CTGGAG 1 cut(s) 471
Bpu10I CCTNAGC 1 cut(s) 1031
Bpu1102I GCTNAGC 1 cut(s) 177
BpuEI CTTGAG 4 cut(s) 264, 851, 1150, 1309
BpuMI CCSGG 4 cut(s) 205, 407, 965, 966
BsaHI GRCGYC 1 cut(s) 327
BsaI GGTCTC 2 cut(s) 105, 938
BsaJI CCNNGG 5 cut(s) 93, 189, 198, 963, 964
BsaWI WCCGGW 1 cut(s) 1144
BsaXI ACNNNNNCTCC 2 cut(s) 1148, 1178
Bsc4I CCNNNNNNNGG 6 cut(s) 204, 521, 522, 812, 900, 1371
Bse1I ACTGG 4 cut(s) 89, 683, 879, 989
Bse3DI GCAATG 1 cut(s) 957
BseDI CCNNGG 5 cut(s) 93, 189, 198, 963, 964
BseGI GGATG 3 cut(s) 199, 806, 1302
BseLI CCNNNNNNNGG 6 cut(s) 204, 521, 522, 812, 900, 1371
BseMI GCAATG 1 cut(s) 957
BseMII CTCAG 4 cut(s) 168, 531, 634, 1045
BseNI ACTGG 4 cut(s) 89, 683, 879, 989
BseRI GAGGAG 2 cut(s) 20, 854
BseSI GKGCMC 1 cut(s) 477
BsgI GTGCAG 2 cut(s) 732, 1100
BshFI GGCC 5 cut(s) 203, 431, 805, 861, 1375
BshNI GGYRCC 2 cut(s) 49, 890
BsiHKAI GWGCWC 1 cut(s) 638
BsiHKCI CYCGRG 2 cut(s) 6, 964
BsiSI CCGG 5 cut(s) 204, 407, 965, 1145, 1365
BslI CCNNNNNNNGG 6 cut(s) 204, 521, 522, 812, 900, 1371
BsmAI GTCTC 4 cut(s) 105, 629, 938, 1234
BsnI GGCC 5 cut(s) 203, 431, 805, 861, 1375
Bso31I GGTCTC 2 cut(s) 105, 938
BsoBI CYCGRG 2 cut(s) 6, 964
Bsp1286I GDGCHC 2 cut(s) 477, 638
Bsp143I GATC 4 cut(s) 150, 1213, 1347, 1407
Bsp1720I GCTNAGC 1 cut(s) 177
Bsp19I CCATGG 2 cut(s) 93, 189
BspACI CCGC 3 cut(s) 568, 672, 1035
BspANI GGCC 5 cut(s) 203, 431, 805, 861, 1375
BspCNI CTCAG 4 cut(s) 169, 530, 633, 1044
BspLI GGNNCC 4 cut(s) 51, 91, 590, 892
BspPI GGATC 4 cut(s) 158, 1221, 1342, 1402
BspQI GCTCTTC 1 cut(s) 1106
BspT107I GGYRCC 2 cut(s) 49, 890
BspTI CTTAAG 1 cut(s) 137
BspTNI GGTCTC 2 cut(s) 105, 938
BsrDI GCAATG 1 cut(s) 957
BsrI ACTGG 4 cut(s) 89, 683, 879, 989
BssECI CCNNGG 5 cut(s) 93, 189, 198, 963, 964
BssMI GATC 4 cut(s) 150, 1213, 1347, 1407
BssNI GRCGYC 1 cut(s) 327
BssT1I CCWWGG 3 cut(s) 93, 189, 198
Bst4CI ACNGT 1 cut(s) 472
Bst6I CTCTTC 1 cut(s) 1106
BstACI GRCGYC 1 cut(s) 327
BstAFI CTTAAG 1 cut(s) 137
BstAPI GCANNNNNTGC 2 cut(s) 257, 1078
BstC8I GCNNGC 5 cut(s) 445, 680, 1106, 1162, 1282
BstDEI CTNAG 6 cut(s) 177, 517, 620, 899, 1014, 1031
BstDSI CCRYGG 2 cut(s) 93, 189
BstF5I GGATG 3 cut(s) 199, 806, 1302
BstKTI GATC 4 cut(s) 153, 1216, 1350, 1410
BstMAI GTCTC 4 cut(s) 105, 629, 938, 1234
BstMBI GATC 4 cut(s) 150, 1213, 1347, 1407
BstMWI GCNNNNNNNGC 5 cut(s) 257, 453, 996, 1078, 1161
BstNSI RCATGY 2 cut(s) 1108, 1284
BstSCI CCNGG 4 cut(s) 203, 405, 963, 964
BstSLI GKGCMC 1 cut(s) 477
BsuRI GGCC 5 cut(s) 203, 431, 805, 861, 1375
BtgI CCRYGG 2 cut(s) 93, 189
BtsCI GGATG 3 cut(s) 199, 806, 1302
BtsI GCAGTG 1 cut(s) 1103
BtsIMutI CAGTG 4 cut(s) 410, 477, 982, 1103
Cac8I GCNNGC 5 cut(s) 445, 680, 1106, 1162, 1282
Cfr13I GGNCC 4 cut(s) 430, 588, 1027, 1090
Cfr9I CCCGGG 1 cut(s) 964
CseI GACGC 2 cut(s) 182, 316
Csp6I GTAC 6 cut(s) 364, 384, 891, 922, 1084, 1249
CviAII CATG 7 cut(s) 94, 190, 223, 1105, 1168, 1220, 1281
CviQI GTAC 6 cut(s) 364, 384, 891, 922, 1084, 1249
DdeI CTNAG 6 cut(s) 177, 517, 620, 899, 1014, 1031
DpnI GATC 4 cut(s) 152, 1215, 1349, 1409
DpnII GATC 4 cut(s) 150, 1213, 1347, 1407
DraI TTTAAA 1 cut(s) 1359
EaeI YGGCCR 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 1106
EarI CTCTTC 1 cut(s) 1106
Ecl136II GAGCTC 1 cut(s) 636
Eco130I CCWWGG 3 cut(s) 93, 189, 198
Eco24I GRGCYC 1 cut(s) 638
Eco31I GGTCTC 2 cut(s) 105, 938
Eco32I GATATC 1 cut(s) 781
Eco47I GGWCC 3 cut(s) 588, 1027, 1090
Eco53kI GAGCTC 1 cut(s) 636
Eco57I CTGAAG 1 cut(s) 1130
Eco88I CYCGRG 2 cut(s) 6, 964
EcoICRI GAGCTC 1 cut(s) 636
EcoO109I RGGNCCY 2 cut(s) 430, 588
EcoRI GAATTC 1 cut(s) 653
EcoRV GATATC 1 cut(s) 781
EcoT14I CCWWGG 3 cut(s) 93, 189, 198
EcoT38I GRGCYC 1 cut(s) 638
ErhI CCWWGG 3 cut(s) 93, 189, 198
FaeI CATG 7 cut(s) 97, 193, 226, 1108, 1171, 1223, 1284
FalI AAGNNNNNCTT 2 cut(s) 150, 182
FatI CATG 7 cut(s) 93, 189, 222, 1104, 1167, 1219, 1280
FblI GTMKAC 1 cut(s) 492
FokI GGATG 3 cut(s) 206, 813, 1309
FriOI GRGCYC 1 cut(s) 638
GsuI CTGGAG 1 cut(s) 471
HaeIII GGCC 5 cut(s) 203, 431, 805, 861, 1375
HapII CCGG 5 cut(s) 204, 407, 965, 1145, 1365
HgaI GACGC 2 cut(s) 182, 316
Hin1I GRCGYC 1 cut(s) 327
Hin1II CATG 7 cut(s) 97, 193, 226, 1108, 1171, 1223, 1284
HincII GTYRAC 2 cut(s) 82, 604
HindII GTYRAC 2 cut(s) 82, 604
HindIII AAGCTT 2 cut(s) 164, 1183
HinfI GANTC 3 cut(s) 231, 497, 562
HpaI GTTAAC 1 cut(s) 604
HpaII CCGG 5 cut(s) 204, 407, 965, 1145, 1365
HphI GGTGA 4 cut(s) 301, 827, 980, 1417
Hpy166II GTNNAC 4 cut(s) 82, 493, 604, 922
Hpy188I TCNGA 6 cut(s) 117, 132, 520, 533, 640, 1174
Hpy188III TCNNGA 8 cut(s) 281, 317, 450, 544, 868, 1021, 1345, 1405
Hpy8I GTNNAC 4 cut(s) 82, 493, 604, 922
Hpy99I CGWCG 3 cut(s) 58, 176, 1121
HpyAV CCTTC 5 cut(s) 487, 513, 625, 662, 1191
HpyCH4III ACNGT 1 cut(s) 472
HpyCH4IV ACGT 2 cut(s) 979, 1119
HpyCH4V TGCA 8 cut(s) 65, 725, 749, 1072, 1081, 1104, 1179, 1394
HpyF10VI GCNNNNNNNGC 5 cut(s) 257, 453, 996, 1078, 1161
HpyF3I CTNAG 6 cut(s) 177, 517, 620, 899, 1014, 1031
HpySE526I ACGT 2 cut(s) 979, 1119
Hsp92I GRCGYC 1 cut(s) 327
Hsp92II CATG 7 cut(s) 97, 193, 226, 1108, 1171, 1223, 1284
KpnI GGTACC 1 cut(s) 894
KspAI GTTAAC 1 cut(s) 604
Kzo9I GATC 4 cut(s) 150, 1213, 1347, 1407
LguI GCTCTTC 1 cut(s) 1106
LmnI GCTCC 1 cut(s) 1169
LweI GCATC 5 cut(s) 123, 184, 712, 999, 1395
MaeII ACGT 2 cut(s) 979, 1119
MaeIII GTNAC 6 cut(s) 301, 374, 731, 815, 968, 980
MalI GATC 4 cut(s) 152, 1215, 1349, 1409
MboI GATC 4 cut(s) 150, 1213, 1347, 1407
MboII GAAGA 4 cut(s) 305, 896, 1123, 1414
MhlI GDGCHC 2 cut(s) 477, 638
MluCI AATT 7 cut(s) 653, 727, 786, 911, 1054, 1353, 1379
MmeI TCCRAC 4 cut(s) 208, 742, 1152, 1174
MroXI GAANNNNTTC 1 cut(s) 167
MseI TTAA 8 cut(s) 138, 368, 576, 603, 687, 1062, 1358, 1430
MslI CAYNNNNRTG 3 cut(s) 41, 1224, 1430
MspA1I CMGCKG 1 cut(s) 1035
MspCI CTTAAG 1 cut(s) 137
MspI CCGG 5 cut(s) 204, 407, 965, 1145, 1365
MspR9I CCNGG 4 cut(s) 205, 407, 965, 966
MwoI GCNNNNNNNGC 5 cut(s) 257, 453, 996, 1078, 1161
NciI CCSGG 4 cut(s) 205, 407, 965, 966
NcoI CCATGG 2 cut(s) 93, 189
NdeII GATC 4 cut(s) 150, 1213, 1347, 1407
NlaIII CATG 7 cut(s) 97, 193, 226, 1108, 1171, 1223, 1284
NlaIV GGNNCC 4 cut(s) 51, 91, 590, 892
NmuCI GTSAC 4 cut(s) 731, 815, 968, 980
NspI RCATGY 2 cut(s) 1108, 1284
PaeI GCATGC 2 cut(s) 1108, 1284
PaeR7I CTCGAG 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 1106
PcsI WCGNNNNNNNCGW 1 cut(s) 53
PdmI GAANNNNTTC 1 cut(s) 167
PfeI GAWTC 3 cut(s) 231, 497, 562
PpuMI RGGWCCY 1 cut(s) 588
Psp124BI GAGCTC 1 cut(s) 638
Psp5II RGGWCCY 1 cut(s) 588
PspN4I GGNNCC 4 cut(s) 51, 91, 590, 892
PspPI GGNCC 4 cut(s) 430, 588, 1027, 1090
PspPPI RGGWCCY 1 cut(s) 588
PspXI VCTCGAGB 1 cut(s) 6
PsrI GAACNNNNNNTAC 2 cut(s) 347, 379
RsaI GTAC 6 cut(s) 365, 385, 892, 923, 1085, 1250
RsaNI GTAC 6 cut(s) 364, 384, 891, 922, 1084, 1249
RseI CAYNNNNRTG 3 cut(s) 41, 1224, 1430
SacI GAGCTC 1 cut(s) 638
SapI GCTCTTC 1 cut(s) 1106
SaqAI TTAA 8 cut(s) 138, 368, 576, 603, 687, 1062, 1358, 1430
Sau3AI GATC 4 cut(s) 150, 1213, 1347, 1407
Sau96I GGNCC 4 cut(s) 430, 588, 1027, 1090
ScaI AGTACT 1 cut(s) 1085
ScrFI CCNGG 4 cut(s) 205, 407, 965, 966
SduI GDGCHC 2 cut(s) 477, 638
SfaNI GCATC 5 cut(s) 123, 184, 712, 999, 1395
Sfr274I CTCGAG 1 cut(s) 6
SinI GGWCC 3 cut(s) 588, 1027, 1090
SlaI CTCGAG 1 cut(s) 6
SmaI CCCGGG 1 cut(s) 966
SmiMI CAYNNNNRTG 3 cut(s) 41, 1224, 1430
SmlI CTYRAG 6 cut(s) 6, 137, 279, 866, 1129, 1324
SmoI CTYRAG 6 cut(s) 6, 137, 279, 866, 1129, 1324
SphI GCATGC 2 cut(s) 1108, 1284
Sse9I AATT 7 cut(s) 653, 727, 786, 911, 1054, 1353, 1379
SsiI CCGC 3 cut(s) 568, 672, 1035
SstI GAGCTC 1 cut(s) 638
StyD4I CCNGG 4 cut(s) 203, 405, 963, 964
StyI CCWWGG 3 cut(s) 93, 189, 198
TaaI ACNGT 1 cut(s) 472
TaiI ACGT 2 cut(s) 982, 1122
TaqI TCGA 3 cut(s) 7, 171, 702
TasI AATT 7 cut(s) 653, 727, 786, 911, 1054, 1353, 1379
TatI WGTACW 2 cut(s) 1083, 1248
TfiI GAWTC 3 cut(s) 231, 497, 562
Tru1I TTAA 8 cut(s) 138, 368, 576, 603, 687, 1062, 1358, 1430
Tru9I TTAA 8 cut(s) 138, 368, 576, 603, 687, 1062, 1358, 1430
TscAI CASTG 4 cut(s) 417, 477, 989, 1103
TseFI GTSAC 4 cut(s) 731, 815, 968, 980
Tsp45I GTSAC 4 cut(s) 731, 815, 968, 980
TspDTI ATGAA 1 cut(s) 453
TspMI CCCGGG 1 cut(s) 964
TspRI CASTG 4 cut(s) 417, 477, 989, 1103
Vha464I CTTAAG 1 cut(s) 137
VpaK11BI GGWCC 3 cut(s) 588, 1027, 1090
XapI RAATTY 2 cut(s) 653, 1353
XceI RCATGY 2 cut(s) 1108, 1284
XcmI CCANNNNNNNNNTGG 3 cut(s) 196, 244, 835
XhoI CTCGAG 1 cut(s) 6
XmaI CCCGGG 1 cut(s) 964
XmiI GTMKAC 1 cut(s) 492
XmnI GAANNNNTTC 1 cut(s) 167
ZrmI AGTACT 1 cut(s) 1085
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.