Rw2G021240

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
29343640 .. 29345435
1796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G021240.1

Sequence Viewer

Length: 1440 bp
ATGGCTCGAGCCGCGGTTCTTGTATGGCTCTTGTCGATGATGTTAGTCTCAATCGATCTTGCACAAGGTTATGGTATCAACTGGGGTGCAATGGCTACTAACCCTTTGCCTCCAAAGAAAGTTGTTGCAATGCTCAAGGAAAATGGGTTCAAGAAAGTGAAGCTTTTCGATGCAGATCCTTCAATGATGGACGCATTGGCCGGTTCAGGCCTTGAGGTTATGGTTGGGATCCCCAATGACAAGTTAAAATCACTTGCTAACGATTATGGAAATGCTAAAGCCTGGGTGAAAGAAAATGTGACCAGCTATTTGTATGATGGGGGCGTCGCTATCAAATATGTGGCTGTTGGAAACGAGCCATTCTTAACAAGTTACAACGGGAGTTACGTTAAGACTACTTACCCGGCAATGCAAAACATCCAAAAGGCCTTGTATGATTATAGCAAGGATATTGGAACGAAAATCAAGGTTACCACTCCCTTCAATGCAGATGTGTATGAATCGAAATCAGACAAGCCATCAGATGGTCGTTTCCGAAAGGACATTAAGGATAGTATGGTGCAGATTCTAAAATTTCTCAAGGAAGCGAAGTCGCCATTTCTTGTTAACATATACCCCTTCCTTAGTCTGGCCTTAAGCTCTGATTTTCCCAGGGAGTTTGCTTTCTTTGATGATGGTGGCAACGGAGTTCAAGACAACAACATCCAGTACAAAAATGTCTTTGATGCAAATTTAGATACATGTTACAATGCACTGAAACAGGAAGGTTTTCAGGATTTGGAAATTCAAATTGGGGAGGTCGGATGGCCTACAGATGGTAACAAGGATGCCAACATCAAATTGGCGCAGAAGTTTTATGATGGTCTGTTCAAGAAAATAGAAAAAGGGGAGGGAACCCCTCTTCGAAAAGGAAACCCAGAAGTGTACCTTTTCAGCCTTTTTGATGAGAACACCAAAAGTATTGCCCCAGGGGACTTCGAGCGTCACTGGGGCATATTTCGTTATGACGGACAACCTAAGTTTCCAATGGACCTCAGCGGAAAGGGGCAAAACCAAATGCTCAAGCCTGTAAAAGGGGTGGAAATGATGGACAAGCAATGGTGCGTATTAAACGGTGATGTGAAAAACTTGAGTAAGGCACAGGTCGAAAAGGACTATGCTTGCTCAAATTCGGATTGCACAAGCATTAAAAATGGTAGCTCATGTAGTTCTCTTGAACCGCATGACCAAATCTCTTACGCTTTCAATTCATTCTACCAATTGAAAAACCAAAGCGTGGAGGCATGTAATTTTAATGGGATGGGAACAAGGGTAACAGAAGATCCCTCAAAAGGAGACTGTCTATTTCCGATACAGGTAGAAAGTATTGCTACAGATGTGGCTGCATTGAGTTTCTCCACAGGACTATTATTGCTCATGACCTTCTTCGCATTCATGTAA

Protein Analysis

479

Amino Acids

53.23

Weight (kDa)

5.43

Isoelectric Point (pI)

25.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 25 - 344 3.4e-66 Glycosyl hydrolases family 17
X8 PF07983 366 - 436 1e-14 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 524, 1276
AccII CGCG 1 cut(s) 14
AciI CCGC 4 cut(s) 12, 14, 1038, 1220
AclWI GGATC 4 cut(s) 170, 223, 236, 1316
AcoI YGGCCR 1 cut(s) 198
AcsI RAATTY 4 cut(s) 572, 730, 783, 1168
AcyI GRCGYC 1 cut(s) 324
AfaI GTAC 2 cut(s) 710, 926
AfiI CCNNNNNNNGG 6 cut(s) 524, 628, 815, 1073, 1276, 1331
AflII CTTAAG 1 cut(s) 634
AflIII ACRYGT 1 cut(s) 740
AgsI TTSAA 9 cut(s) 151, 183, 484, 692, 788, 871, 1217, 1246, 1264
AjnI CCWGG 3 cut(s) 281, 650, 967
AjuI GAANNNNNNNTTGG 2 cut(s) 774, 806
AloI GAACNNNNNNTCC 2 cut(s) 131, 163
AluBI AGCT 4 cut(s) 163, 306, 639, 1200
AluI AGCT 4 cut(s) 163, 306, 639, 1200
Alw26I GTCTC 2 cut(s) 52, 1329
AlwI GGATC 4 cut(s) 170, 223, 236, 1316
Ama87I CYCGRG 1 cut(s) 6
AoxI GGCC 5 cut(s) 198, 208, 426, 630, 806
ApeKI GCWGC 1 cut(s) 1382
ApoI RAATTY 4 cut(s) 572, 730, 783, 1168
ArsI GACNNNNNNTTYG 2 cut(s) 292, 324
Asp700I GAANNNNTTC 2 cut(s) 164, 768
AspLEI GCGC 1 cut(s) 847
AspS9I GGNCC 1 cut(s) 1030
AsuC2I CCSGG 1 cut(s) 404
AsuHPI GGTGA 2 cut(s) 298, 1127
AsuII TTCGAA 1 cut(s) 904
AvaI CYCGRG 1 cut(s) 6
AvaII GGWCC 1 cut(s) 1030
BamHI GGATCC 1 cut(s) 228
BbvCI CCTCAGC 1 cut(s) 1034
BbvI GCAGC 1 cut(s) 1369
BciT130I CCWGG 3 cut(s) 283, 652, 969
BcnI CCSGG 1 cut(s) 404
BcoDI GTCTC 2 cut(s) 52, 1329
BfmI CTRYAG 2 cut(s) 810, 1371
BfrI CTTAAG 1 cut(s) 634
BisI GCNGC 2 cut(s) 12, 1383
BlsI GCNGC 2 cut(s) 13, 1384
Bme1390I CCNGG 4 cut(s) 283, 404, 652, 969
Bme18I GGWCC 1 cut(s) 1030
BmeT110I CYCGRG 1 cut(s) 6
BmgT120I GGNCC 1 cut(s) 1030
BmiI GGNNCC 2 cut(s) 230, 895
BmrFI CCNGG 4 cut(s) 283, 404, 652, 969
BmrI ACTGGG 2 cut(s) 91, 997
BmsI GCATC 3 cut(s) 160, 715, 817
BmuI ACTGGG 2 cut(s) 91, 997
Bpu10I CCTNAGC 1 cut(s) 1034
Bpu14I TTCGAA 1 cut(s) 904
BpuEI CTTGAG 5 cut(s) 119, 233, 563, 1046, 1150
BpuMI CCSGG 1 cut(s) 404
Bsa29I ATCGAT 1 cut(s) 54
BsaBI GATNNNNATC 1 cut(s) 174
BsaHI GRCGYC 1 cut(s) 324
BsaJI CCNNGG 6 cut(s) 12, 282, 650, 651, 967, 968
Bsc4I CCNNNNNNNGG 6 cut(s) 524, 628, 815, 1073, 1276, 1331
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 3 cut(s) 86, 706, 992
Bse3DI GCAATG 4 cut(s) 96, 135, 414, 1103
Bse8I GATNNNNATC 1 cut(s) 174
BseBI CCWGG 3 cut(s) 283, 652, 969
BseCI ATCGAT 1 cut(s) 54
BseDI CCNNGG 6 cut(s) 12, 282, 650, 651, 967, 968
BseGI GGATG 5 cut(s) 417, 702, 809, 832, 1305
BseJI GATNNNNATC 1 cut(s) 174
BseLI CCNNNNNNNGG 6 cut(s) 524, 628, 815, 1073, 1276, 1331
BseMI GCAATG 4 cut(s) 96, 135, 414, 1103
BseMII CTCAG 1 cut(s) 1048
BseNI ACTGG 3 cut(s) 86, 706, 992
BseXI GCAGC 1 cut(s) 1369
BsgI GTGCAG 1 cut(s) 581
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 5 cut(s) 200, 210, 428, 632, 808
BshVI ATCGAT 1 cut(s) 54
BsiHKCI CYCGRG 1 cut(s) 6
BsiSI CCGG 2 cut(s) 201, 404
BslFI GGGAC 1 cut(s) 986
BslI CCNNNNNNNGG 6 cut(s) 524, 628, 815, 1073, 1276, 1331
BsmAI GTCTC 2 cut(s) 52, 1329
BsmFI GGGAC 1 cut(s) 986
BsmI GAATGC 1 cut(s) 1430
BsnI GGCC 5 cut(s) 200, 210, 428, 632, 808
BsoBI CYCGRG 1 cut(s) 6
Bsp119I TTCGAA 1 cut(s) 904
Bsp143I GATC 4 cut(s) 55, 175, 228, 1321
BspACI CCGC 4 cut(s) 12, 14, 1038, 1220
BspANI GGCC 5 cut(s) 200, 210, 428, 632, 808
BspCNI CTCAG 1 cut(s) 1047
BspDI ATCGAT 1 cut(s) 54
BspFNI CGCG 1 cut(s) 14
BspHI TCATGA 1 cut(s) 1416
BspLI GGNNCC 2 cut(s) 230, 895
BspPI GGATC 4 cut(s) 170, 223, 236, 1316
BspT104I TTCGAA 1 cut(s) 904
BspTI CTTAAG 1 cut(s) 634
BsrDI GCAATG 4 cut(s) 96, 135, 414, 1103
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 3 cut(s) 86, 706, 992
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 6 cut(s) 12, 282, 650, 651, 967, 968
BssMI GATC 4 cut(s) 55, 175, 228, 1321
BssNI GRCGYC 1 cut(s) 324
Bst2UI CCWGG 3 cut(s) 283, 652, 969
Bst4CI ACNGT 2 cut(s) 1115, 1340
Bst6I CTCTTC 1 cut(s) 906
BstACI GRCGYC 1 cut(s) 324
BstAFI CTTAAG 1 cut(s) 634
BstBI TTCGAA 1 cut(s) 904
BstC8I GCNNGC 1 cut(s) 1162
BstDEI CTNAG 3 cut(s) 623, 1017, 1034
BstDSI CCRYGG 1 cut(s) 12
BstEII GGTNACC 1 cut(s) 469
BstENI CCTNNNNNAGG 1 cut(s) 1071
BstF5I GGATG 5 cut(s) 417, 702, 809, 832, 1305
BstFNI CGCG 1 cut(s) 14
BstHHI GCGC 1 cut(s) 847
BstKTI GATC 4 cut(s) 58, 178, 231, 1324
BstMAI GTCTC 2 cut(s) 52, 1329
BstMBI GATC 4 cut(s) 55, 175, 228, 1321
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 3 cut(s) 283, 652, 969
BstNSI RCATGY 2 cut(s) 744, 1287
BstPI GGTNACC 1 cut(s) 469
BstSCI CCNGG 4 cut(s) 281, 402, 650, 967
BstSFI CTRYAG 2 cut(s) 810, 1371
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 1369
BstX2I RGATCY 3 cut(s) 175, 228, 1321
BstYI RGATCY 3 cut(s) 175, 228, 1321
Bsu15I ATCGAT 1 cut(s) 54
BsuRI GGCC 5 cut(s) 200, 210, 428, 632, 808
BsuTUI ATCGAT 1 cut(s) 54
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 5 cut(s) 417, 702, 809, 832, 1305
BtsIMutI CAGTG 2 cut(s) 752, 985
Cac8I GCNNGC 1 cut(s) 1162
CciI TCATGA 1 cut(s) 1416
CfoI GCGC 1 cut(s) 847
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 1030
Cfr42I CCGCGG 1 cut(s) 15
ClaI ATCGAT 1 cut(s) 54
CseI GACGC 3 cut(s) 200, 313, 971
Csp6I GTAC 2 cut(s) 709, 925
CviAII CATG 6 cut(s) 741, 1203, 1223, 1284, 1417, 1435
CviQI GTAC 2 cut(s) 709, 925
DdeI CTNAG 3 cut(s) 623, 1017, 1034
DpnI GATC 4 cut(s) 57, 177, 230, 1323
DpnII GATC 4 cut(s) 55, 175, 228, 1321
EaeI YGGCCR 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 906
EarI CTCTTC 1 cut(s) 906
Eco147I AGGCCT 2 cut(s) 210, 428
Eco47I GGWCC 1 cut(s) 1030
Eco88I CYCGRG 1 cut(s) 6
Eco91I GGTNACC 1 cut(s) 469
EcoNI CCTNNNNNAGG 1 cut(s) 1071
EcoO65I GGTNACC 1 cut(s) 469
EcoRII CCWGG 3 cut(s) 281, 650, 967
FaeI CATG 6 cut(s) 744, 1206, 1226, 1287, 1420, 1438
FalI AAGNNNNNCTT 4 cut(s) 147, 179, 912, 944
FaqI GGGAC 1 cut(s) 986
FatI CATG 6 cut(s) 740, 1202, 1222, 1283, 1416, 1434
Fnu4HI GCNGC 2 cut(s) 12, 1383
FokI GGATG 5 cut(s) 404, 689, 816, 839, 1312
Fsp4HI GCNGC 2 cut(s) 12, 1383
GlaI GCGC 1 cut(s) 846
GluI GCNGC 2 cut(s) 12, 1383
HaeIII GGCC 5 cut(s) 200, 210, 428, 632, 808
HapII CCGG 2 cut(s) 201, 404
HgaI GACGC 3 cut(s) 200, 313, 971
HhaI GCGC 1 cut(s) 847
Hin1I GRCGYC 1 cut(s) 324
Hin1II CATG 6 cut(s) 744, 1206, 1226, 1287, 1420, 1438
Hin6I GCGC 1 cut(s) 845
HinP1I GCGC 1 cut(s) 845
HincII GTYRAC 1 cut(s) 607
HindII GTYRAC 1 cut(s) 607
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 2 cut(s) 500, 565
HpaI GTTAAC 1 cut(s) 607
HpaII CCGG 2 cut(s) 201, 404
HphI GGTGA 2 cut(s) 298, 1127
Hpy166II GTNNAC 2 cut(s) 607, 925
Hpy188I TCNGA 7 cut(s) 511, 523, 536, 643, 803, 1174, 1350
Hpy188III TCNNGA 6 cut(s) 151, 692, 773, 871, 1214, 1417
Hpy8I GTNNAC 2 cut(s) 607, 925
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 5 cut(s) 189, 490, 628, 758, 1432
HpyCH4III ACNGT 2 cut(s) 1115, 1340
HpyCH4IV ACGT 1 cut(s) 387
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 3 cut(s) 623, 1017, 1034
HpySE526I ACGT 1 cut(s) 387
Hsp92I GRCGYC 1 cut(s) 324
Hsp92II CATG 6 cut(s) 744, 1206, 1226, 1287, 1420, 1438
HspAI GCGC 1 cut(s) 845
KspAI GTTAAC 1 cut(s) 607
KspI CCGCGG 1 cut(s) 15
Kzo9I GATC 4 cut(s) 55, 175, 228, 1321
Lsp1109I GCAGC 1 cut(s) 1369
LweI GCATC 3 cut(s) 160, 715, 817
MaeII ACGT 1 cut(s) 387
MaeIII GTNAC 8 cut(s) 298, 371, 383, 469, 743, 818, 983, 1312
MalI GATC 4 cut(s) 57, 177, 230, 1323
MboI GATC 4 cut(s) 55, 175, 228, 1321
MboII GAAGA 3 cut(s) 893, 1331, 1417
MfeI CAATTG 1 cut(s) 1259
MflI RGATCY 3 cut(s) 175, 228, 1321
MluCI AATT 9 cut(s) 572, 730, 783, 789, 839, 1168, 1246, 1259, 1288
MmeI TCCRAC 2 cut(s) 328, 781
MnlI CCTC 8 cut(s) 120, 208, 790, 883, 909, 1043, 1273, 1336
MroXI GAANNNNTTC 2 cut(s) 164, 768
MseI TTAA 9 cut(s) 245, 365, 390, 546, 606, 635, 1109, 1188, 1293
MspA1I CMGCKG 2 cut(s) 14, 1038
MspCI CTTAAG 1 cut(s) 634
MspI CCGG 2 cut(s) 201, 404
MspR9I CCNGG 4 cut(s) 283, 404, 652, 969
MunI CAATTG 1 cut(s) 1259
Mva1269I GAATGC 1 cut(s) 1430
MvaI CCWGG 3 cut(s) 283, 652, 969
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 404
NdeII GATC 4 cut(s) 55, 175, 228, 1321
NlaIII CATG 6 cut(s) 744, 1206, 1226, 1287, 1420, 1438
NlaIV GGNNCC 2 cut(s) 230, 895
NmuCI GTSAC 2 cut(s) 298, 983
NspI RCATGY 2 cut(s) 744, 1287
NspV TTCGAA 1 cut(s) 904
PaeR7I CTCGAG 1 cut(s) 6
PagI TCATGA 1 cut(s) 1416
PasI CCCWGGG 2 cut(s) 651, 968
PceI AGGCCT 2 cut(s) 210, 428
PciI ACATGT 1 cut(s) 740
PcsI WCGNNNNNNNCGW 1 cut(s) 384
PctI GAATGC 1 cut(s) 1430
PdmI GAANNNNTTC 2 cut(s) 164, 768
PfeI GAWTC 2 cut(s) 500, 565
PflMI CCANNNNNTGG 2 cut(s) 524, 1276
PkrI GCNGC 2 cut(s) 13, 1384
PscI ACATGT 1 cut(s) 740
Psp6I CCWGG 3 cut(s) 281, 650, 967
PspEI GGTNACC 1 cut(s) 469
PspGI CCWGG 3 cut(s) 281, 650, 967
PspN4I GGNNCC 2 cut(s) 230, 895
PspPI GGNCC 1 cut(s) 1030
PspXI VCTCGAGB 1 cut(s) 6
PsuI RGATCY 3 cut(s) 175, 228, 1321
RsaI GTAC 2 cut(s) 710, 926
RsaNI GTAC 2 cut(s) 709, 925
SacII CCGCGG 1 cut(s) 15
SaqAI TTAA 9 cut(s) 245, 365, 390, 546, 606, 635, 1109, 1188, 1293
SatI GCNGC 2 cut(s) 12, 1383
Sau3AI GATC 4 cut(s) 55, 175, 228, 1321
Sau96I GGNCC 1 cut(s) 1030
ScrFI CCNGG 4 cut(s) 283, 404, 652, 969
SfaNI GCATC 3 cut(s) 160, 715, 817
SfcI CTRYAG 2 cut(s) 810, 1371
Sfr274I CTCGAG 1 cut(s) 6
Sfr303I CCGCGG 1 cut(s) 15
SfuI TTCGAA 1 cut(s) 904
SgrBI CCGCGG 1 cut(s) 15
SinI GGWCC 1 cut(s) 1030
SlaI CTCGAG 1 cut(s) 6
SmlI CTYRAG 7 cut(s) 6, 134, 212, 578, 634, 1061, 1129
SmoI CTYRAG 7 cut(s) 6, 134, 212, 578, 634, 1061, 1129
Sse9I AATT 9 cut(s) 572, 730, 783, 789, 839, 1168, 1246, 1259, 1288
SseBI AGGCCT 2 cut(s) 210, 428
SsiI CCGC 4 cut(s) 12, 14, 1038, 1220
StuI AGGCCT 2 cut(s) 210, 428
StyD4I CCNGG 4 cut(s) 281, 402, 650, 967
TaaI ACNGT 2 cut(s) 1115, 1340
TaiI ACGT 1 cut(s) 390
TaqI TCGA 8 cut(s) 7, 35, 54, 168, 503, 904, 978, 1146
TasI AATT 9 cut(s) 572, 730, 783, 789, 839, 1168, 1246, 1259, 1288
TatI WGTACW 1 cut(s) 708
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 2 cut(s) 500, 565
Tru1I TTAA 9 cut(s) 245, 365, 390, 546, 606, 635, 1109, 1188, 1293
Tru9I TTAA 9 cut(s) 245, 365, 390, 546, 606, 635, 1109, 1188, 1293
TscAI CASTG 2 cut(s) 759, 992
TseFI GTSAC 2 cut(s) 298, 983
TseI GCWGC 1 cut(s) 1382
Tsp45I GTSAC 2 cut(s) 298, 983
TspDTI ATGAA 3 cut(s) 513, 1239, 1423
TspGWI ACGGA 2 cut(s) 699, 1023
TspRI CASTG 2 cut(s) 759, 992
Van91I CCANNNNNTGG 2 cut(s) 524, 1276
Vha464I CTTAAG 1 cut(s) 634
VpaK11BI GGWCC 1 cut(s) 1030
XagI CCTNNNNNAGG 1 cut(s) 1071
XapI RAATTY 4 cut(s) 572, 730, 783, 1168
XceI RCATGY 2 cut(s) 744, 1287
XcmI CCANNNNNNNNNTGG 1 cut(s) 838
XhoI CTCGAG 1 cut(s) 6
XmnI GAANNNNTTC 2 cut(s) 164, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.