Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001736

Physical Location & Seq

Genomic Coordinates Forward (+)

61742606 .. 61743938

Gene Structure 1333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00126440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGTTCGAGTCTCAATTCTTGTAACATGTGTAATCTGCCTAATGTTAGTGGTCTTCACAGACCATGCTCAAGGTTTAGGTGTCAACTGGGGAGCAATGGCGTCGCACCCTTTGGATCCCAGCAATGTAGTAAAAATGCTCAAGGACAATGGGATCAAGAGAGTAAAGCTTTTCGACGCAGAGCCCGCCACCATGAAGGCCTTGTCCGGGTCAGGTATTTCGGTCATTGTTGGAATTCCCAACGAAAAATTGGCCTCAATTTCTTCGGCTTACAAACATGCCCAAGAGTGGGTAAAAGAAAATATCACCAAATATGATCATAATGGGGGCGTTGATATCAGCTATGTGGCTGTTGGAAACGAGCCATTCTTAACAAGTTACAATGGAAGTTTTCTCAAGACTACTTTTCCAGCATTGCAAAACATTCAAAAGGCCCTAGATGAAGCTGGCACTACACAGAAAATCAAAGCCATAGTGCCCTTCAACGCTGATGTTTATGAATCTGCTTCGGGCAAACCATCGGATGGTCAGTTCCGAAAGGACATCAAAAGTGAGATGCTCGATATACTAGGTTTGCTCAAGAGCAATAAGTCTCCATTTTTCGTTAACATATATCCCTTCCTTAGTCTCCAGCAAAGCTCTTATTTCCCCAAAGAATTTGCCTTCTTTGATGGTACTAGCAAACCTGTTGAAGACAACAACTACCAATATACCAATGTGTTTGATGCAAATCATGACACACTTATTTGGTCACTCAAGAAGGTTGGCTACCAGGACTTGGACATAGTTATTGGAGAAGCCGGATGGCCTACAGATGGTGACAAGAATGCCAATAAAATTTTGGCCAAGAAATTCTATGATGGACTTCTCAAGAAATTAGCAAAGGCGGACGGAACCCCTTTTCGAAAAGGGTACTTGGAAGTGTACCTTTTTGGGCTCACTGATGAGGACAAAAAGTATTGCCCCAGGGGACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009664 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048046 GO:0055044 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

325

Amino Acids

35.98

Weight (kDa)

7.63

Isoelectric Point (pI)

28.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	26 - 319	1.3e-56	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64790
fragaria_vesca	FvH4_1g22980 FvH4_1g22990
malus_domestica	MD01G1021100.v1.1 MD01G1021200.v1.1 MD15G1330800.v1.1 MD15G1330900.v1.1
prunus_persica	Prupe.6G168700_v2.0.a1 Prupe.6G168800_v2.0.a1
pyrus_communis	pycom01g05030 pycom15g29440
rosa_chinensis	RchiOBHm_Chr2g0117511 RchiOBHm_Chr2g0117521 RchiOBHm_Chr2g0117531
rosa_laevigata	RLG00000018351 RLG00000018352 RLG00000018353
rosa_multiflora	Rmu_co8432351.1_g000001 Rmu_sc0001617.1_g000014 Rmu_sc0003454.1_g000003 Rmu_sc0003454.1_g000004 Rmu_sc0003454.1_g000018 Rmu_sc0022810.1_g000001 Rmu_sc0039255.1_g000002
rosa_roxburghii	Rroxscaffold_2G00126440 Rroxscaffold_2G00126450 Rroxscaffold_2G00126480
rosa_rugosa	Rorug02G0212800 Rorug02G0212900 Rorug02G0213000
rosa_samantha	Rh2AG268100 Rh2AG268300 Rh2AG268400 Rh2BG280500 Rh2BG280700 Rh2BG280800 Rh2CG271500 Rh2CG271600 Rh2CG271700 Rh2DG275300 Rh2DG275500 Rh2DG275600 Rh2DG294800 Rh2DG295000 Rh2DG295100
rosa_wichuraiana	Rw2G021220 Rw2G021230 Rw2G021240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	524, 778
AciI	CCGC	2 cut(s)	186, 887
AclWI	GGATC	3 cut(s)	110, 123, 161
AcoI	YGGCCR	1 cut(s)	843
AcsI	RAATTY	4 cut(s)	234, 656, 837, 851
AcyI	GRCGYC	1 cut(s)	101
AfaI	GTAC	3 cut(s)	676, 914, 926
AfiI	CCNNNNNNNGG	6 cut(s)	207, 288, 289, 524, 778, 815
AflIII	ACRYGT	1 cut(s)	26
AgsI	TTSAA	3 cut(s)	428, 484, 692
AjnI	CCWGG	2 cut(s)	771, 965
AloI	GAACNNNNNNTCC	2 cut(s)	515, 547
AluBI	AGCT	4 cut(s)	169, 342, 446, 639
AluI	AGCT	4 cut(s)	169, 342, 446, 639
Alw26I	GTCTC	3 cut(s)	16, 597, 632
AlwI	GGATC	3 cut(s)	110, 123, 161
AoxI	GGCC	5 cut(s)	198, 252, 432, 806, 843
ApoI	RAATTY	4 cut(s)	234, 656, 837, 851
AspS9I	GGNCC	1 cut(s)	433
AsuC2I	CCSGG	1 cut(s)	208
AsuHPI	GGTGA	2 cut(s)	298, 830
AsuII	TTCGAA	1 cut(s)	904
BaeGI	GKGCMC	1 cut(s)	480
BalI	TGGCCA	1 cut(s)	845
BamHI	GGATCC	1 cut(s)	115
BanII	GRGCYC	2 cut(s)	186, 939
BarI	GAAGNNNNNNTAC	2 cut(s)	752, 784
BbsI	GAAGAC	2 cut(s)	46, 699
BccI	CCATC	6 cut(s)	518, 526, 665, 798, 809, 854
BcgI	CGANNNNNNTGC	2 cut(s)	84, 118
BciT130I	CCWGG	2 cut(s)	773, 967
BclI	TGATCA	1 cut(s)	316
BcnI	CCSGG	1 cut(s)	208
BcoDI	GTCTC	3 cut(s)	16, 597, 632
BfaI	CTAG	3 cut(s)	437, 569, 678
BfmI	CTRYAG	1 cut(s)	810
Bme1390I	CCNGG	3 cut(s)	208, 773, 967
BmgT120I	GGNCC	1 cut(s)	433
BmiI	GGNNCC	2 cut(s)	117, 895
BmrFI	CCNGG	3 cut(s)	208, 773, 967
BmrI	ACTGGG	1 cut(s)	97
BmsI	GCATC	2 cut(s)	546, 715
BmuI	ACTGGG	1 cut(s)	97
BpiI	GAAGAC	2 cut(s)	46, 699
BpmI	CTGGAG	1 cut(s)	614
Bpu14I	TTCGAA	1 cut(s)	904
BpuEI	CTTGAG	6 cut(s)	54, 125, 380, 563, 740, 854
BpuMI	CCSGG	1 cut(s)	208
BsaBI	GATNNNNATC	1 cut(s)	729
BsaHI	GRCGYC	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	965, 966
Bsc4I	CCNNNNNNNGG	6 cut(s)	207, 288, 289, 524, 778, 815
Bse1I	ACTGG	1 cut(s)	92
Bse3DI	GCAATG	3 cut(s)	102, 130, 413
Bse8I	GATNNNNATC	1 cut(s)	729
BseBI	CCWGG	2 cut(s)	773, 967
BseDI	CCNNGG	2 cut(s)	965, 966
BseGI	GGATG	2 cut(s)	529, 809
BseJI	GATNNNNATC	1 cut(s)	729
BseLI	CCNNNNNNNGG	6 cut(s)	207, 288, 289, 524, 778, 815
BseMI	GCAATG	3 cut(s)	102, 130, 413
BseNI	ACTGG	1 cut(s)	92
BseSI	GKGCMC	1 cut(s)	480
BseYI	CCCAGC	1 cut(s)	119
BshFI	GGCC	5 cut(s)	200, 254, 434, 808, 845
BsiSI	CCGG	2 cut(s)	207, 801
BslI	CCNNNNNNNGG	6 cut(s)	207, 288, 289, 524, 778, 815
BsmAI	GTCTC	3 cut(s)	16, 597, 632
BsmI	GAATGC	1 cut(s)	832
BsnI	GGCC	5 cut(s)	200, 254, 434, 808, 845
Bsp119I	TTCGAA	1 cut(s)	904
Bsp1286I	GDGCHC	3 cut(s)	186, 480, 939
Bsp143I	GATC	3 cut(s)	115, 153, 316
BspACI	CCGC	2 cut(s)	186, 887
BspANI	GGCC	5 cut(s)	200, 254, 434, 808, 845
BspHI	TCATGA	1 cut(s)	733
BspLI	GGNNCC	2 cut(s)	117, 895
BspPI	GGATC	3 cut(s)	110, 123, 161
BspT104I	TTCGAA	1 cut(s)	904
BsrDI	GCAATG	3 cut(s)	102, 130, 413
BsrI	ACTGG	1 cut(s)	92
BssECI	CCNNGG	2 cut(s)	965, 966
BssMI	GATC	3 cut(s)	115, 153, 316
BssNI	GRCGYC	1 cut(s)	101
Bst2UI	CCWGG	2 cut(s)	773, 967
BstACI	GRCGYC	1 cut(s)	101
BstBI	TTCGAA	1 cut(s)	904
BstC8I	GCNNGC	2 cut(s)	186, 448
BstDEI	CTNAG	1 cut(s)	623
BstF5I	GGATG	2 cut(s)	529, 809
BstKTI	GATC	3 cut(s)	118, 156, 319
BstMAI	GTCTC	3 cut(s)	16, 597, 632
BstMBI	GATC	3 cut(s)	115, 153, 316
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNI	CCWGG	2 cut(s)	773, 967
BstNSI	RCATGY	2 cut(s)	30, 281
BstSCI	CCNGG	3 cut(s)	206, 771, 965
BstSFI	CTRYAG	1 cut(s)	810
BstSLI	GKGCMC	1 cut(s)	480
BstV2I	GAAGAC	2 cut(s)	46, 699
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
BsuRI	GGCC	5 cut(s)	200, 254, 434, 808, 845
BtsCI	GGATG	2 cut(s)	529, 809
BtsIMutI	CAGTG	1 cut(s)	939
Cac8I	GCNNGC	2 cut(s)	186, 448
CciI	TCATGA	1 cut(s)	733
Cfr13I	GGNCC	1 cut(s)	433
CseI	GACGC	2 cut(s)	90, 185
Csp6I	GTAC	3 cut(s)	675, 913, 925
CviAII	CATG	5 cut(s)	27, 65, 193, 278, 734
CviQI	GTAC	3 cut(s)	675, 913, 925
DdeI	CTNAG	1 cut(s)	623
DpnI	GATC	3 cut(s)	117, 155, 318
DpnII	GATC	3 cut(s)	115, 153, 316
EaeI	YGGCCR	1 cut(s)	843
EciI	GGCGGA	1 cut(s)	902
Eco147I	AGGCCT	1 cut(s)	200
Eco24I	GRGCYC	2 cut(s)	186, 939
Eco32I	GATATC	1 cut(s)	337
EcoO109I	RGGNCCY	1 cut(s)	433
EcoRI	GAATTC	1 cut(s)	234
EcoRII	CCWGG	2 cut(s)	771, 965
EcoRV	GATATC	1 cut(s)	337
EcoT38I	GRGCYC	2 cut(s)	186, 939
FaeI	CATG	5 cut(s)	30, 68, 196, 281, 737
FalI	AAGNNNNNCTT	2 cut(s)	912, 944
FatI	CATG	5 cut(s)	26, 64, 192, 277, 733
FauI	CCCGC	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	316
FokI	GGATG	2 cut(s)	536, 816
FriOI	GRGCYC	2 cut(s)	186, 939
FspBI	CTAG	3 cut(s)	437, 569, 678
GsaI	CCCAGC	1 cut(s)	123
GsuI	CTGGAG	1 cut(s)	614
HaeIII	GGCC	5 cut(s)	200, 254, 434, 808, 845
HapII	CCGG	2 cut(s)	207, 801
HgaI	GACGC	2 cut(s)	90, 185
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	5 cut(s)	30, 68, 196, 281, 737
HincII	GTYRAC	2 cut(s)	85, 607
HindII	GTYRAC	2 cut(s)	85, 607
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	2 cut(s)	9, 500
HpaI	GTTAAC	1 cut(s)	607
HpaII	CCGG	2 cut(s)	207, 801
HphI	GGTGA	2 cut(s)	298, 830
Hpy166II	GTNNAC	3 cut(s)	85, 607, 925
Hpy188I	TCNGA	2 cut(s)	523, 536
Hpy188III	TCNNGA	6 cut(s)	157, 397, 580, 734, 757, 871
Hpy8I	GTNNAC	3 cut(s)	85, 607, 925
Hpy99I	CGWCG	2 cut(s)	106, 179
HpyAV	CCTTC	5 cut(s)	190, 490, 628, 673, 754
HpyCH4V	TGCA	2 cut(s)	418, 728
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	1 cut(s)	623
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	5 cut(s)	30, 68, 196, 281, 737
Ksp22I	TGATCA	1 cut(s)	316
KspAI	GTTAAC	1 cut(s)	607
Kzo9I	GATC	3 cut(s)	115, 153, 316
LmnI	GCTCC	1 cut(s)	92
LweI	GCATC	2 cut(s)	546, 715
MaeI	CTAG	3 cut(s)	437, 569, 678
MaeIII	GTNAC	4 cut(s)	22, 377, 750, 818
MalI	GATC	3 cut(s)	117, 155, 318
MboI	GATC	3 cut(s)	115, 153, 316
MboII	GAAGA	3 cut(s)	46, 255, 704
MflI	RGATCY	1 cut(s)	115
MhlI	GDGCHC	3 cut(s)	186, 480, 939
MlsI	TGGCCA	1 cut(s)	845
MluCI	AATT	8 cut(s)	15, 234, 248, 258, 656, 837, 851, 875
MluNI	TGGCCA	1 cut(s)	845
MlyI	GAGTC	1 cut(s)	18
MmeI	TCCRAC	2 cut(s)	211, 334
MnlI	CCTC	2 cut(s)	265, 940
Mox20I	TGGCCA	1 cut(s)	845
MscI	TGGCCA	1 cut(s)	845
MseI	TTAA	2 cut(s)	371, 606
Msp20I	TGGCCA	1 cut(s)	845
MspI	CCGG	2 cut(s)	207, 801
MspR9I	CCNGG	3 cut(s)	208, 773, 967
Mva1269I	GAATGC	1 cut(s)	832
MvaI	CCWGG	2 cut(s)	773, 967
MwoI	GCNNNNNNNGC	1 cut(s)	185
NciI	CCSGG	1 cut(s)	208
NdeII	GATC	3 cut(s)	115, 153, 316
NlaIII	CATG	5 cut(s)	30, 68, 196, 281, 737
NlaIV	GGNNCC	2 cut(s)	117, 895
NmuCI	GTSAC	2 cut(s)	750, 818
NspI	RCATGY	2 cut(s)	30, 281
NspV	TTCGAA	1 cut(s)	904
PagI	TCATGA	1 cut(s)	733
PasI	CCCWGGG	1 cut(s)	966
PceI	AGGCCT	1 cut(s)	200
PciI	ACATGT	1 cut(s)	26
PctI	GAATGC	1 cut(s)	832
PfeI	GAWTC	1 cut(s)	500
PflMI	CCANNNNNTGG	2 cut(s)	524, 778
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
PscI	ACATGT	1 cut(s)	26
Psp6I	CCWGG	2 cut(s)	771, 965
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	2 cut(s)	771, 965
PspN4I	GGNNCC	2 cut(s)	117, 895
PspPI	GGNCC	1 cut(s)	433
PsuI	RGATCY	1 cut(s)	115
RsaI	GTAC	3 cut(s)	676, 914, 926
RsaNI	GTAC	3 cut(s)	675, 913, 925
SaqAI	TTAA	2 cut(s)	371, 606
Sau3AI	GATC	3 cut(s)	115, 153, 316
Sau96I	GGNCC	1 cut(s)	433
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	3 cut(s)	208, 773, 967
SduI	GDGCHC	3 cut(s)	186, 480, 939
SfaNI	GCATC	2 cut(s)	546, 715
SfcI	CTRYAG	1 cut(s)	810
SfuI	TTCGAA	1 cut(s)	904
SmlI	CTYRAG	6 cut(s)	69, 140, 395, 578, 755, 869
SmoI	CTYRAG	6 cut(s)	69, 140, 395, 578, 755, 869
Sse9I	AATT	8 cut(s)	15, 234, 248, 258, 656, 837, 851, 875
SseBI	AGGCCT	1 cut(s)	200
SsiI	CCGC	2 cut(s)	186, 887
SspMI	CTAG	3 cut(s)	437, 569, 678
StuI	AGGCCT	1 cut(s)	200
StyD4I	CCNGG	3 cut(s)	206, 771, 965
TaqI	TCGA	4 cut(s)	7, 174, 561, 904
TaqII	GACCGA	1 cut(s)	211
TasI	AATT	8 cut(s)	15, 234, 248, 258, 656, 837, 851, 875
TfiI	GAWTC	1 cut(s)	500
Tru1I	TTAA	2 cut(s)	371, 606
Tru9I	TTAA	2 cut(s)	371, 606
TscAI	CASTG	1 cut(s)	946
TseFI	GTSAC	2 cut(s)	750, 818
Tsp45I	GTSAC	2 cut(s)	750, 818
TspDTI	ATGAA	3 cut(s)	209, 456, 513
TspGWI	ACGGA	1 cut(s)	906
TspRI	CASTG	1 cut(s)	946
Van91I	CCANNNNNTGG	2 cut(s)	524, 778
XapI	RAATTY	4 cut(s)	234, 656, 837, 851
XceI	RCATGY	2 cut(s)	30, 281
XcmI	CCANNNNNNNNNTGG	2 cut(s)	247, 838
XspI	CTAG	3 cut(s)	437, 569, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.