Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0001736

Physical Location & Seq

Genomic Coordinates Forward (+)

4539255 .. 4539947

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g05030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGGATCAACAAAACTGAAGCTTTTCGATGTGGATCCTAAGACCATGAAAGCCTTGTCCAGCACTGGTATTGATGTCATGGTCGGAATTCCCAATGAAAAATTGAACAAACTTGCTCATGATTACGCAACTGCCCGAAAATGGGTCAAACAGAATGTCACTGCATATCTTCATAATGGGCGAGTCACCATCCGGTATGCATGTGTGTGTTTATGTCCAAAATGTTTGTCTTCCGATTCAATATTAGTGAAGCTGACTGACTCAATCCATCTTTTGTTTAAAAAAAAATTTCACAGCTATGTGGCTGTCGGGAACAAGCCATTCTTAACAAGTTACAACGGTACTTATGTCAAAAATGACATTCCAAAACAAATGTCGAAAATACTAGAGTACCTTCGTACACATAGCGCGCCATTTGTTGTCAACATTTATCCCTTCCTTAGTCTCTCCGGAAGCTCTGGCTTCCCAAAAGAATTTGCTTTCTTTGATGGTGGTGGCAAGACGGTTAGAGACAATGGTGCCCCGTACAACAATGTGTTTGATGCAAAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009664 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048046 GO:0055044 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

185

Amino Acids

20.5

Weight (kDa)

9.57

Isoelectric Point (pI)

32.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64790
fragaria_vesca	FvH4_1g22980 FvH4_1g22990
malus_domestica	MD01G1021100.v1.1 MD01G1021200.v1.1 MD15G1330800.v1.1 MD15G1330900.v1.1
prunus_persica	Prupe.6G168700_v2.0.a1 Prupe.6G168800_v2.0.a1
pyrus_communis	pycom01g05030 pycom15g29440
rosa_chinensis	RchiOBHm_Chr2g0117511 RchiOBHm_Chr2g0117521 RchiOBHm_Chr2g0117531
rosa_laevigata	RLG00000018351 RLG00000018352 RLG00000018353
rosa_multiflora	Rmu_co8432351.1_g000001 Rmu_sc0001617.1_g000014 Rmu_sc0003454.1_g000003 Rmu_sc0003454.1_g000004 Rmu_sc0003454.1_g000018 Rmu_sc0022810.1_g000001 Rmu_sc0039255.1_g000002
rosa_roxburghii	Rroxscaffold_2G00126440 Rroxscaffold_2G00126450 Rroxscaffold_2G00126480
rosa_rugosa	Rorug02G0212800 Rorug02G0212900 Rorug02G0213000
rosa_samantha	Rh2AG268100 Rh2AG268300 Rh2AG268400 Rh2BG280500 Rh2BG280700 Rh2BG280800 Rh2CG271500 Rh2CG271600 Rh2CG271700 Rh2DG275300 Rh2DG275500 Rh2DG275600 Rh2DG294800 Rh2DG295000 Rh2DG295100
rosa_wichuraiana	Rw2G021220 Rw2G021230 Rw2G021240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	518
AccII	CGCG	1 cut(s)	410
AccIII	TCCGGA	1 cut(s)	449
AclWI	GGATC	3 cut(s)	13, 29, 42
AcsI	RAATTY	3 cut(s)	87, 287, 473
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	4 cut(s)	343, 392, 400, 527
AfiI	CCNNNNNNNGG	2 cut(s)	141, 142
AgsI	TTSAA	2 cut(s)	106, 240
AluBI	AGCT	4 cut(s)	22, 253, 297, 456
AluI	AGCT	4 cut(s)	22, 253, 297, 456
Alw26I	GTCTC	2 cut(s)	449, 504
AlwI	GGATC	3 cut(s)	13, 29, 42
Aor13HI	TCCGGA	1 cut(s)	449
ApoI	RAATTY	3 cut(s)	87, 287, 473
ArsI	GACNNNNNNTTYG	6 cut(s)	141, 173, 212, 244, 359, 391
Asp700I	GAANNNNTTC	1 cut(s)	23
AspLEI	GCGC	2 cut(s)	410, 412
AsuHPI	GGTGA	1 cut(s)	178
BaeGI	GKGCMC	1 cut(s)	523
BaeI	ACNNNNGTAYC	4 cut(s)	333, 366, 374, 407
BamHI	GGATCC	1 cut(s)	34
BanI	GGYRCC	1 cut(s)	518
BbsI	GAAGAC	1 cut(s)	222
BccI	CCATC	3 cut(s)	197, 276, 482
BcoDI	GTCTC	2 cut(s)	449, 504
BfaI	CTAG	1 cut(s)	386
BmiI	GGNNCC	2 cut(s)	36, 520
BmsI	GCATC	1 cut(s)	532
BpiI	GAAGAC	1 cut(s)	222
BsaBI	GATNNNNATC	1 cut(s)	33
BsaWI	WCCGGW	2 cut(s)	192, 449
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 142
Bse1I	ACTGG	1 cut(s)	70
Bse8I	GATNNNNATC	1 cut(s)	33
BseAI	TCCGGA	1 cut(s)	449
BseGI	GGATG	1 cut(s)	189
BseJI	GATNNNNATC	1 cut(s)	33
BseLI	CCNNNNNNNGG	2 cut(s)	141, 142
BseNI	ACTGG	1 cut(s)	70
BsePI	GCGCGC	1 cut(s)	408
BseSI	GKGCMC	1 cut(s)	523
Bsh1236I	CGCG	1 cut(s)	410
BshNI	GGYRCC	1 cut(s)	518
BsiSI	CCGG	2 cut(s)	193, 450
BslI	CCNNNNNNNGG	2 cut(s)	141, 142
BsmAI	GTCTC	2 cut(s)	449, 504
Bsp1286I	GDGCHC	1 cut(s)	523
Bsp13I	TCCGGA	1 cut(s)	449
Bsp143I	GATC	2 cut(s)	5, 34
BspEI	TCCGGA	1 cut(s)	449
BspFNI	CGCG	1 cut(s)	410
BspHI	TCATGA	1 cut(s)	118
BspLI	GGNNCC	2 cut(s)	36, 520
BspPI	GGATC	3 cut(s)	13, 29, 42
BspT107I	GGYRCC	1 cut(s)	518
BsrI	ACTGG	1 cut(s)	70
BssHII	GCGCGC	1 cut(s)	408
BssMI	GATC	2 cut(s)	5, 34
Bst4CI	ACNGT	2 cut(s)	341, 505
BstC8I	GCNNGC	1 cut(s)	410
BstDEI	CTNAG	2 cut(s)	39, 440
BstF5I	GGATG	1 cut(s)	189
BstFNI	CGCG	1 cut(s)	410
BstHHI	GCGC	2 cut(s)	410, 412
BstKTI	GATC	2 cut(s)	8, 37
BstMAI	GTCTC	2 cut(s)	449, 504
BstMBI	GATC	2 cut(s)	5, 34
BstNSI	RCATGY	1 cut(s)	204
BstSLI	GKGCMC	1 cut(s)	523
BstUI	CGCG	1 cut(s)	410
BstV2I	GAAGAC	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	189
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	2 cut(s)	63, 159
Cac8I	GCNNGC	1 cut(s)	410
CciI	TCATGA	1 cut(s)	118
CfoI	GCGC	2 cut(s)	410, 412
Csp6I	GTAC	4 cut(s)	342, 391, 399, 526
CviAII	CATG	4 cut(s)	46, 79, 119, 201
CviJI	RGCY	8 cut(s)	22, 53, 253, 297, 305, 319, 456, 462
CviKI_1	RGCY	8 cut(s)	22, 53, 253, 297, 305, 319, 456, 462
CviQI	GTAC	4 cut(s)	342, 391, 399, 526
DdeI	CTNAG	2 cut(s)	39, 440
DpnI	GATC	2 cut(s)	7, 36
DpnII	GATC	2 cut(s)	5, 34
DraI	TTTAAA	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	38
EcoRI	GAATTC	1 cut(s)	87
EcoT22I	ATGCAT	1 cut(s)	202
FaeI	CATG	4 cut(s)	49, 82, 122, 204
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FatI	CATG	4 cut(s)	45, 78, 118, 200
FokI	GGATG	1 cut(s)	176
FspBI	CTAG	1 cut(s)	386
GlaI	GCGC	2 cut(s)	409, 411
HapII	CCGG	2 cut(s)	193, 450
HhaI	GCGC	2 cut(s)	410, 412
Hin1II	CATG	4 cut(s)	49, 82, 122, 204
Hin6I	GCGC	2 cut(s)	408, 410
HinP1I	GCGC	2 cut(s)	408, 410
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	3 cut(s)	183, 236, 260
HpaII	CCGG	2 cut(s)	193, 450
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	2 cut(s)	401, 424
Hpy188I	TCNGA	2 cut(s)	86, 235
Hpy188III	TCNNGA	3 cut(s)	119, 310, 450
Hpy8I	GTNNAC	2 cut(s)	401, 424
HpyAV	CCTTC	2 cut(s)	404, 445
HpyCH4III	ACNGT	2 cut(s)	341, 505
HpyCH4V	TGCA	3 cut(s)	164, 200, 545
HpyF3I	CTNAG	2 cut(s)	39, 440
Hsp92II	CATG	4 cut(s)	49, 82, 122, 204
HspAI	GCGC	2 cut(s)	408, 410
Kpn2I	TCCGGA	1 cut(s)	449
Kzo9I	GATC	2 cut(s)	5, 34
LpnPI	CCDG	5 cut(s)	51, 73, 206, 444, 463
LweI	GCATC	1 cut(s)	532
MaeI	CTAG	1 cut(s)	386
MaeIII	GTNAC	3 cut(s)	157, 184, 332
MalI	GATC	2 cut(s)	7, 36
MboI	GATC	2 cut(s)	5, 34
MboII	GAAGA	2 cut(s)	161, 222
MflI	RGATCY	1 cut(s)	34
MhlI	GDGCHC	1 cut(s)	523
MluCI	AATT	5 cut(s)	87, 101, 287, 473, 548
MlyI	GAGTC	2 cut(s)	192, 254
MmeI	TCCRAC	1 cut(s)	64
Mph1103I	ATGCAT	1 cut(s)	202
MroI	TCCGGA	1 cut(s)	449
MroXI	GAANNNNTTC	1 cut(s)	23
MseI	TTAA	2 cut(s)	279, 326
MslI	CAYNNNNRTG	2 cut(s)	205, 297
MspI	CCGG	2 cut(s)	193, 450
MvnI	CGCG	1 cut(s)	410
NdeII	GATC	2 cut(s)	5, 34
NlaIII	CATG	4 cut(s)	49, 82, 122, 204
NlaIV	GGNNCC	2 cut(s)	36, 520
NmuCI	GTSAC	2 cut(s)	157, 184
NsiI	ATGCAT	1 cut(s)	202
NspI	RCATGY	1 cut(s)	204
PagI	TCATGA	1 cut(s)	118
PauI	GCGCGC	1 cut(s)	408
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	236
PleI	GAGTC	2 cut(s)	191, 254
PpsI	GAGTC	2 cut(s)	191, 254
PspN4I	GGNNCC	2 cut(s)	36, 520
PsuI	RGATCY	1 cut(s)	34
PteI	GCGCGC	1 cut(s)	408
RsaI	GTAC	4 cut(s)	343, 392, 400, 527
RsaNI	GTAC	4 cut(s)	342, 391, 399, 526
RseI	CAYNNNNRTG	2 cut(s)	205, 297
SaqAI	TTAA	2 cut(s)	279, 326
Sau3AI	GATC	2 cut(s)	5, 34
SchI	GAGTC	2 cut(s)	192, 254
SduI	GDGCHC	1 cut(s)	523
SetI	ASST	5 cut(s)	24, 255, 299, 396, 458
SfaNI	GCATC	1 cut(s)	532
SmiMI	CAYNNNNRTG	2 cut(s)	205, 297
Sse9I	AATT	5 cut(s)	87, 101, 287, 473, 548
SspI	AATATT	1 cut(s)	243
SspMI	CTAG	1 cut(s)	386
TaaI	ACNGT	2 cut(s)	341, 505
TaqI	TCGA	2 cut(s)	27, 377
TasI	AATT	5 cut(s)	87, 101, 287, 473, 548
TfiI	GAWTC	1 cut(s)	236
Tru1I	TTAA	2 cut(s)	279, 326
Tru9I	TTAA	2 cut(s)	279, 326
TscAI	CASTG	2 cut(s)	70, 166
TseFI	GTSAC	2 cut(s)	157, 184
Tsp45I	GTSAC	2 cut(s)	157, 184
TspDTI	ATGAA	3 cut(s)	62, 111, 161
TspRI	CASTG	2 cut(s)	70, 166
XapI	RAATTY	3 cut(s)	87, 287, 473
XceI	RCATGY	1 cut(s)	204
XmnI	GAANNNNTTC	1 cut(s)	23
XspI	CTAG	1 cut(s)	386
Zsp2I	ATGCAT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.