Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001736

Physical Location & Seq

Genomic Coordinates Reverse (-)

20268378 .. 20270910

Gene Structure 2533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0212900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGGCGAAGATCCGACCGTTGGATCTTCGTATAAATGCAAAACGGTGATTAGGGAGGCGATTCGTGAGAATCCGTCTGTCGGATTTTTGTATAAATTTGTGAAGATGTTAGTAAGGACGATTCAGGAAGATCTGACCGTGATTGACGGTCTCCCTTGGGTGAACGATTTCGGTGTGTATTGTGTTGAATTGAAGACGCAGCGGGAATATCGAGAGTTTAGAATCATCTCATCAGATGTCAATGAAGTTTGCAGCAAAGAGCACAAAACAACAGTAGCACCTGAACATGTGCTCAAGGCTTTACAGGCGGCAATACAATTCGAATACCTCGAAGACAGGAGTGATTCTACTCATCATCAATATTATCATAATAAACACCCCTATTCCAATAACAGCATTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009664 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048046 GO:0055044 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

134

Amino Acids

15.63

Weight (kDa)

6.29

Isoelectric Point (pI)

29.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64790
fragaria_vesca	FvH4_1g22980 FvH4_1g22990
malus_domestica	MD01G1021100.v1.1 MD01G1021200.v1.1 MD15G1330800.v1.1 MD15G1330900.v1.1
prunus_persica	Prupe.6G168700_v2.0.a1 Prupe.6G168800_v2.0.a1
pyrus_communis	pycom01g05030 pycom15g29440
rosa_chinensis	RchiOBHm_Chr2g0117511 RchiOBHm_Chr2g0117521 RchiOBHm_Chr2g0117531
rosa_laevigata	RLG00000018351 RLG00000018352 RLG00000018353
rosa_multiflora	Rmu_co8432351.1_g000001 Rmu_sc0001617.1_g000014 Rmu_sc0003454.1_g000003 Rmu_sc0003454.1_g000004 Rmu_sc0003454.1_g000018 Rmu_sc0022810.1_g000001 Rmu_sc0039255.1_g000002
rosa_roxburghii	Rroxscaffold_2G00126440 Rroxscaffold_2G00126450 Rroxscaffold_2G00126480
rosa_rugosa	Rorug02G0212800 Rorug02G0212900 Rorug02G0213000
rosa_samantha	Rh2AG268100 Rh2AG268300 Rh2AG268400 Rh2BG280500 Rh2BG280700 Rh2BG280800 Rh2CG271500 Rh2CG271600 Rh2CG271700 Rh2DG275300 Rh2DG275500 Rh2DG275600 Rh2DG294800 Rh2DG295000 Rh2DG295100
rosa_wichuraiana	Rw2G021220 Rw2G021230 Rw2G021240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	202, 308
AclWI	GGATC	2 cut(s)	5, 31
AcsI	RAATTY	1 cut(s)	95
AfiI	CCNNNNNNNGG	2 cut(s)	20, 80
AflIII	ACRYGT	1 cut(s)	286
AgsI	TTSAA	2 cut(s)	188, 193
Alw21I	GWGCWC	2 cut(s)	264, 294
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	2 cut(s)	5, 31
ApeKI	GCWGC	2 cut(s)	199, 252
ApoI	RAATTY	1 cut(s)	95
Asp700I	GAANNNNTTC	1 cut(s)	167
AsuHPI	GGTGA	2 cut(s)	58, 172
AsuII	TTCGAA	1 cut(s)	321
BbsI	GAAGAC	2 cut(s)	200, 339
Bbv12I	GWGCWC	2 cut(s)	264, 294
BbvI	GCAGC	2 cut(s)	211, 264
BcoDI	GTCTC	1 cut(s)	155
BglII	AGATCT	1 cut(s)	130
BisI	GCNGC	3 cut(s)	200, 253, 309
BlsI	GCNGC	3 cut(s)	201, 254, 310
BpiI	GAAGAC	2 cut(s)	200, 339
Bpu14I	TTCGAA	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	278
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 80
BseDI	CCNNGG	1 cut(s)	155
BseLI	CCNNNNNNNGG	2 cut(s)	20, 80
BseXI	GCAGC	2 cut(s)	211, 264
Bsh1285I	CGRYCG	1 cut(s)	18
BsiEI	CGRYCG	1 cut(s)	18
BsiHKAI	GWGCWC	2 cut(s)	264, 294
BslI	CCNNNNNNNGG	2 cut(s)	20, 80
BsmAI	GTCTC	1 cut(s)	155
BsmI	GAATGC	1 cut(s)	396
Bso31I	GGTCTC	1 cut(s)	155
Bsp119I	TTCGAA	1 cut(s)	321
Bsp1286I	GDGCHC	2 cut(s)	264, 294
Bsp143I	GATC	3 cut(s)	10, 23, 130
BspACI	CCGC	2 cut(s)	202, 308
BspPI	GGATC	2 cut(s)	5, 31
BspT104I	TTCGAA	1 cut(s)	321
BspTNI	GGTCTC	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	155
BssMI	GATC	3 cut(s)	10, 23, 130
BssT1I	CCWWGG	1 cut(s)	155
Bst4CI	ACNGT	5 cut(s)	19, 46, 139, 149, 274
BstBI	TTCGAA	1 cut(s)	321
BstKTI	GATC	3 cut(s)	13, 26, 133
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	3 cut(s)	10, 23, 130
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstNSI	RCATGY	1 cut(s)	290
BstV1I	GCAGC	2 cut(s)	211, 264
BstV2I	GAAGAC	2 cut(s)	200, 339
BstX2I	RGATCY	3 cut(s)	10, 23, 130
BstYI	RGATCY	3 cut(s)	10, 23, 130
CseI	GACGC	1 cut(s)	205
CviAII	CATG	1 cut(s)	287
CviJI	RGCY	1 cut(s)	299
CviKI_1	RGCY	1 cut(s)	299
DpnI	GATC	3 cut(s)	12, 25, 132
DpnII	GATC	3 cut(s)	10, 23, 130
Eco130I	CCWWGG	1 cut(s)	155
Eco31I	GGTCTC	1 cut(s)	155
EcoT14I	CCWWGG	1 cut(s)	155
ErhI	CCWWGG	1 cut(s)	155
FaeI	CATG	1 cut(s)	290
FaiI	YATR	4 cut(s)	33, 93, 288, 369
FatI	CATG	1 cut(s)	286
FauI	CCCGC	1 cut(s)	195
Fnu4HI	GCNGC	3 cut(s)	200, 253, 309
Fsp4HI	GCNGC	3 cut(s)	200, 253, 309
GluI	GCNGC	3 cut(s)	200, 253, 309
HgaI	GACGC	1 cut(s)	205
Hin1II	CATG	1 cut(s)	290
HinfI	GANTC	5 cut(s)	61, 70, 121, 222, 344
HphI	GGTGA	2 cut(s)	58, 172
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	4 cut(s)	15, 83, 135, 235
Hpy188III	TCNNGA	3 cut(s)	65, 125, 212
Hpy8I	GTNNAC	1 cut(s)	163
HpyCH4III	ACNGT	5 cut(s)	19, 46, 139, 149, 274
HpyCH4V	TGCA	2 cut(s)	39, 252
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
Hsp92II	CATG	1 cut(s)	290
Kzo9I	GATC	3 cut(s)	10, 23, 130
LpnPI	CCDG	4 cut(s)	110, 290, 294, 322
Lsp1109I	GCAGC	2 cut(s)	211, 264
MalI	GATC	3 cut(s)	12, 25, 132
MboI	GATC	3 cut(s)	10, 23, 130
MboII	GAAGA	6 cut(s)	18, 20, 115, 140, 205, 344
MflI	RGATCY	3 cut(s)	10, 23, 130
MhlI	GDGCHC	2 cut(s)	264, 294
MluCI	AATT	3 cut(s)	95, 188, 317
MmeI	TCCRAC	2 cut(s)	38, 61
MnlI	CCTC	2 cut(s)	49, 338
MroXI	GAANNNNTTC	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	202
Mva1269I	GAATGC	1 cut(s)	396
MwoI	GCNNNNNNNGC	1 cut(s)	305
NdeII	GATC	3 cut(s)	10, 23, 130
NlaIII	CATG	1 cut(s)	290
NspI	RCATGY	1 cut(s)	290
NspV	TTCGAA	1 cut(s)	321
PciI	ACATGT	1 cut(s)	286
PcsI	WCGNNNNNNNCGW	1 cut(s)	327
PctI	GAATGC	1 cut(s)	396
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	5 cut(s)	61, 70, 121, 222, 344
PkrI	GCNGC	3 cut(s)	201, 254, 310
PscI	ACATGT	1 cut(s)	286
PsuI	RGATCY	3 cut(s)	10, 23, 130
SatI	GCNGC	3 cut(s)	200, 253, 309
Sau3AI	GATC	3 cut(s)	10, 23, 130
SduI	GDGCHC	2 cut(s)	264, 294
SetI	ASST	2 cut(s)	283, 330
SfuI	TTCGAA	1 cut(s)	321
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	3 cut(s)	95, 188, 317
SsiI	CCGC	2 cut(s)	202, 308
SspI	AATATT	1 cut(s)	362
StyI	CCWWGG	1 cut(s)	155
TaaI	ACNGT	5 cut(s)	19, 46, 139, 149, 274
TaqI	TCGA	4 cut(s)	211, 321, 330, 400
TasI	AATT	3 cut(s)	95, 188, 317
TauI	GCSGC	1 cut(s)	311
TfiI	GAWTC	5 cut(s)	61, 70, 121, 222, 344
TseI	GCWGC	2 cut(s)	199, 252
TspDTI	ATGAA	1 cut(s)	258
TspGWI	ACGGA	1 cut(s)	63
XapI	RAATTY	1 cut(s)	95
XceI	RCATGY	1 cut(s)	290
XmnI	GAANNNNTTC	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.