Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001736

Physical Location & Seq

Genomic Coordinates Forward (+)

61743985 .. 61761564

Gene Structure 17580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00126450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGACCTCACCGGGAAAGGGAACAATAACATGCTCAAGGCGGTACAAGGAGTGCAGTACATGGACAAGCAATGGTGTGTCTTGAACGGCGATGTTCGAAATGAGACTCTGTTAAAAACCGAACTCAATTACGCTTGTTCTCAGACGGATTGCACATCTTTGGGAAGTGGAAGGTCATGCGATTTGGATTTGCCGGGGAAAGTCTCCTATGCTTTCAATTCTTTCTTCCAAAGCAGAGACCAAGACGTTCGGACCTGCAATTTTGATGGCAAGGGAACGATTACAAAGAACGATCCTTCTAAAGGAACTTGCGTATTCAATATACAGATTTACAGTGCGGGAATGCGGCATCAAGTGACTTATGCATTGATTTATAACATTTGTACATATTTCTATGTAGTTTTCCCGTATGCAGTTTTAGGTCCTAATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009664 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048046 GO:0055044 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

144

Amino Acids

16.09

Weight (kDa)

7.51

Isoelectric Point (pI)

45.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	24 - 93	1.4e-14	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64790
fragaria_vesca	FvH4_1g22980 FvH4_1g22990
malus_domestica	MD01G1021100.v1.1 MD01G1021200.v1.1 MD15G1330800.v1.1 MD15G1330900.v1.1
prunus_persica	Prupe.6G168700_v2.0.a1 Prupe.6G168800_v2.0.a1
pyrus_communis	pycom01g05030 pycom15g29440
rosa_chinensis	RchiOBHm_Chr2g0117511 RchiOBHm_Chr2g0117521 RchiOBHm_Chr2g0117531
rosa_laevigata	RLG00000018351 RLG00000018352 RLG00000018353
rosa_multiflora	Rmu_co8432351.1_g000001 Rmu_sc0001617.1_g000014 Rmu_sc0003454.1_g000003 Rmu_sc0003454.1_g000004 Rmu_sc0003454.1_g000018 Rmu_sc0022810.1_g000001 Rmu_sc0039255.1_g000002
rosa_roxburghii	Rroxscaffold_2G00126440 Rroxscaffold_2G00126450 Rroxscaffold_2G00126480
rosa_rugosa	Rorug02G0212800 Rorug02G0212900 Rorug02G0213000
rosa_samantha	Rh2AG268100 Rh2AG268300 Rh2AG268400 Rh2BG280500 Rh2BG280700 Rh2BG280800 Rh2CG271500 Rh2CG271600 Rh2CG271700 Rh2DG275300 Rh2DG275500 Rh2DG275600 Rh2DG294800 Rh2DG295000 Rh2DG295100
rosa_wichuraiana	Rw2G021220 Rw2G021230 Rw2G021240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	375
Acc36I	ACCTGC	1 cut(s)	263
AciI	CCGC	3 cut(s)	41, 338, 346
AclWI	GGATC	1 cut(s)	287
AfaI	GTAC	3 cut(s)	45, 59, 385
AfiI	CCNNNNNNNGG	2 cut(s)	18, 302
AgsI	TTSAA	3 cut(s)	85, 217, 319
Alw26I	GTCTC	3 cut(s)	98, 208, 231
AlwI	GGATC	1 cut(s)	287
AspS9I	GGNCC	3 cut(s)	4, 252, 422
AsuC2I	CCSGG	2 cut(s)	13, 195
AsuII	TTCGAA	1 cut(s)	97
AvaII	GGWCC	3 cut(s)	4, 252, 422
BccI	CCATC	1 cut(s)	260
BceAI	ACGGC	1 cut(s)	103
BcnI	CCSGG	2 cut(s)	13, 195
BcoDI	GTCTC	3 cut(s)	98, 208, 231
BfuAI	ACCTGC	1 cut(s)	263
BisI	GCNGC	1 cut(s)	347
BlsI	GCNGC	1 cut(s)	348
Bme1390I	CCNGG	2 cut(s)	13, 195
Bme18I	GGWCC	3 cut(s)	4, 252, 422
BmgT120I	GGNCC	3 cut(s)	4, 252, 422
BmrFI	CCNGG	2 cut(s)	13, 195
BmsI	GCATC	1 cut(s)	358
Bpu14I	TTCGAA	1 cut(s)	97
BpuEI	CTTGAG	1 cut(s)	20
BpuMI	CCSGG	2 cut(s)	13, 195
BsaI	GGTCTC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 302
Bse3DI	GCAATG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	194
BseLI	CCNNNNNNNGG	2 cut(s)	18, 302
BseMI	GCAATG	1 cut(s)	77
BseMII	CTCAG	1 cut(s)	155
BsgI	GTGCAG	1 cut(s)	74
BsiSI	CCGG	2 cut(s)	12, 194
BslI	CCNNNNNNNGG	2 cut(s)	18, 302
BsmAI	GTCTC	3 cut(s)	98, 208, 231
BsmI	GAATGC	1 cut(s)	348
Bso31I	GGTCTC	1 cut(s)	231
Bsp119I	TTCGAA	1 cut(s)	97
Bsp1407I	TGTACA	1 cut(s)	383
Bsp143I	GATC	1 cut(s)	292
BspACI	CCGC	3 cut(s)	41, 338, 346
BspCNI	CTCAG	1 cut(s)	154
BspMI	ACCTGC	1 cut(s)	263
BspPI	GGATC	1 cut(s)	287
BspT104I	TTCGAA	1 cut(s)	97
BspTNI	GGTCTC	1 cut(s)	231
BsrDI	GCAATG	1 cut(s)	77
BsrGI	TGTACA	1 cut(s)	383
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	1 cut(s)	292
Bst4CI	ACNGT	1 cut(s)	335
BstAUI	TGTACA	1 cut(s)	383
BstBI	TTCGAA	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	141
BstENI	CCTNNNNNAGG	1 cut(s)	300
BstKTI	GATC	1 cut(s)	295
BstMAI	GTCTC	3 cut(s)	98, 208, 231
BstMBI	GATC	1 cut(s)	292
BstNSI	RCATGY	1 cut(s)	34
BstSCI	CCNGG	2 cut(s)	11, 193
BtgZI	GCGATG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	340
BveI	ACCTGC	1 cut(s)	263
Cfr13I	GGNCC	3 cut(s)	4, 252, 422
Csp6I	GTAC	3 cut(s)	44, 58, 384
CviAII	CATG	3 cut(s)	31, 61, 177
CviQI	GTAC	3 cut(s)	44, 58, 384
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
Eco31I	GGTCTC	1 cut(s)	231
Eco47I	GGWCC	3 cut(s)	4, 252, 422
EcoNI	CCTNNNNNAGG	1 cut(s)	300
EcoO109I	RGGNCCY	1 cut(s)	422
EcoT22I	ATGCAT	1 cut(s)	367
FaeI	CATG	3 cut(s)	34, 64, 180
FatI	CATG	3 cut(s)	30, 60, 176
FauI	CCCGC	1 cut(s)	331
Fnu4HI	GCNGC	1 cut(s)	347
Fsp4HI	GCNGC	1 cut(s)	347
GluI	GCNGC	1 cut(s)	347
HapII	CCGG	2 cut(s)	12, 194
Hin1II	CATG	3 cut(s)	34, 64, 180
HinfI	GANTC	1 cut(s)	106
HpaII	CCGG	2 cut(s)	12, 194
Hpy188I	TCNGA	2 cut(s)	144, 252
Hpy188III	TCNNGA	1 cut(s)	82
HpyAV	CCTTC	2 cut(s)	165, 306
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	5 cut(s)	55, 153, 258, 365, 413
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	3 cut(s)	34, 64, 180
Kzo9I	GATC	1 cut(s)	292
LpnPI	CCDG	3 cut(s)	25, 207, 268
LweI	GCATC	1 cut(s)	358
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MboII	GAAGA	1 cut(s)	217
MluCI	AATT	3 cut(s)	127, 217, 259
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	1 cut(s)	17
Mph1103I	ATGCAT	1 cut(s)	367
MseI	TTAA	1 cut(s)	113
MspI	CCGG	2 cut(s)	12, 194
MspR9I	CCNGG	2 cut(s)	13, 195
Mva1269I	GAATGC	1 cut(s)	348
NciI	CCSGG	2 cut(s)	13, 195
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	3 cut(s)	34, 64, 180
NmuCI	GTSAC	1 cut(s)	355
NsiI	ATGCAT	1 cut(s)	367
NspI	RCATGY	1 cut(s)	34
NspV	TTCGAA	1 cut(s)	97
PctI	GAATGC	1 cut(s)	348
PkrI	GCNGC	1 cut(s)	348
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PpuMI	RGGWCCY	1 cut(s)	422
PsiI	TTATAA	1 cut(s)	375
Psp5II	RGGWCCY	1 cut(s)	422
PspPI	GGNCC	3 cut(s)	4, 252, 422
PspPPI	RGGWCCY	1 cut(s)	422
RsaI	GTAC	3 cut(s)	45, 59, 385
RsaNI	GTAC	3 cut(s)	44, 58, 384
SaqAI	TTAA	1 cut(s)	113
SatI	GCNGC	1 cut(s)	347
Sau3AI	GATC	1 cut(s)	292
Sau96I	GGNCC	3 cut(s)	4, 252, 422
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	2 cut(s)	13, 195
SetI	ASST	5 cut(s)	9, 176, 249, 257, 424
SfaNI	GCATC	1 cut(s)	358
SfuI	TTCGAA	1 cut(s)	97
SinI	GGWCC	3 cut(s)	4, 252, 422
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	3 cut(s)	127, 217, 259
SsiI	CCGC	3 cut(s)	41, 338, 346
StyD4I	CCNGG	2 cut(s)	11, 193
TaaI	ACNGT	1 cut(s)	335
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	1 cut(s)	97
TasI	AATT	3 cut(s)	127, 217, 259
TatI	WGTACW	2 cut(s)	57, 383
TauI	GCSGC	1 cut(s)	349
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	1 cut(s)	355
Tsp45I	GTSAC	1 cut(s)	355
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	1 cut(s)	340
VpaK11BI	GGWCC	3 cut(s)	4, 252, 422
XagI	CCTNNNNNAGG	1 cut(s)	300
XceI	RCATGY	1 cut(s)	34
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.