Rroxscaffold_2G00126480

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
61801705 .. 61803804
2100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00126480.1

Sequence Viewer

Length: 1293 bp
ATGGTTCGAGTCTCAATTCTTGTAACATGTGTCATCTCTCTAATGTTTGTGGTCTTGACAGACCATGCTCAAGGTTTAGGTGTCAACTGGGGAGCAATGGCATCGCACCCTTTGGATCCCAGCAATGTAGTAAAGATGCTCAAGGACAATGGGATCAAGAAAGTGAAGCTTTTCGACGCAGAGGCTGCCACCATGAAGGCCTTGTCCGGGTCAGGTATTTCGGTCATTGTTGGAATTCCCAATGACAAGTTGGCCTCAATTTCTTCAGCTTACAAACATGCCCAAAAATGGGTGAAAGAAAACATCGCCAAATATGATCATAATGGGGGCGTTGATATCAGCTATGTGGCTGTTGGAAACGAGCCATTCTTAACAAGTTACAATGGGAGTTTTTACAAGACTACTTTTCCAGCATTGCAAAACATTCAAAAGGCCCTAGATGAAGCTGGCACCAGACAGAAAATCAAAGCCGTAGTGCCCTTCAATGCCGATGTTTACGAATCTGCTTCGGGCAAACCATCGGAAGGTCAGTTCCGAAAAGACATCAAGAGTGAGATGCTCAAGATACTAGGTTTTCTCAAGAGCAATAAGTCTCCATTTTTCGTTAACATATATCCCTTCCTTAGTCTCCAACAAAGCTCTCATTTCCCCAAAGAATTTGCATTCTTTGATGGTACTAGCAAACCTGTTCGAGACAACAACTACCAATATACCAATGTGTTTGATGCAAATCATGACACACTTATTTGGTCACTCAAGAAGGTTGGTTACCAGGACTTGGACATAGTTATTGGAGAAGCGGGATGGCCTACCGATGGTGACAAGAATGCCAATAAAATTTTGGCCAAGAAATTCTATGATGGACTTCTTAAGAAATTAGCAAAGGGGGAGGGAACCCCTCTTCGAAAAGGGTACTTGGAAGTGTACCTTTTTGGGCTCACTGACGAGGACCAAAAAAGTGTTGCCCCAGGGGACTTTGAGCGCCATTGGGGCATCTTAGGCTATGATGGAAAACCTAAGTTCCCGATGGACCTCACCGGAAAAGGGAACAATAAAATGCTCAAGGCTGTACAAGGAGTGCAGTACATGGAGAAGCAATGGTGTGTCTTTGAACAGCGATGTTCGAAATGGCAGTATTTTACAAACCGAACTCAATTACGCTTGTTCTCGTACAGATTGCACATCTTTAGGAGGTGGAAGGTCATGCGATTTGGATTTGGAAGGGAAAGTCTCCTATGCTTTCAATTCTTTCTTCCAAAGCAGAGACCAAGACGTTCGGACCTGCAATTTTGA

Protein Analysis

430

Amino Acids

48.8

Weight (kDa)

9.52

Isoelectric Point (pI)

32.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 26 - 344 3e-63 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 449
AccB7I CCANNNNNTGG 1 cut(s) 778
AciI CCGC 1 cut(s) 800
AclWI GGATC 3 cut(s) 110, 123, 161
AcoI YGGCCR 1 cut(s) 843
AcsI RAATTY 4 cut(s) 234, 656, 837, 851
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 6 cut(s) 676, 914, 926, 1071, 1085, 1172
AfiI CCNNNNNNNGG 7 cut(s) 207, 288, 289, 524, 778, 815, 1044
AflII CTTAAG 1 cut(s) 869
AflIII ACRYGT 1 cut(s) 26
AgsI TTSAA 4 cut(s) 428, 484, 1112, 1244
AjnI CCWGG 2 cut(s) 771, 967
AloI GAACNNNNNNTCC 2 cut(s) 515, 547
AluBI AGCT 5 cut(s) 169, 269, 342, 446, 639
AluI AGCT 5 cut(s) 169, 269, 342, 446, 639
Alw26I GTCTC 6 cut(s) 16, 597, 632, 687, 1235, 1258
AlwI GGATC 3 cut(s) 110, 123, 161
AlwNI CAGNNNCTG 1 cut(s) 185
AoxI GGCC 5 cut(s) 198, 252, 432, 806, 843
ApeKI GCWGC 1 cut(s) 185
ApoI RAATTY 4 cut(s) 234, 656, 837, 851
Asp700I GAANNNNTTC 1 cut(s) 170
AspLEI GCGC 1 cut(s) 984
AspS9I GGNCC 4 cut(s) 433, 949, 1030, 1279
AsuC2I CCSGG 1 cut(s) 208
AsuHPI GGTGA 3 cut(s) 304, 830, 1027
AsuII TTCGAA 2 cut(s) 904, 1124
AvaII GGWCC 3 cut(s) 949, 1030, 1279
BaeGI GKGCMC 1 cut(s) 480
BalI TGGCCA 1 cut(s) 845
BamHI GGATCC 1 cut(s) 115
BanI GGYRCC 1 cut(s) 449
BanII GRGCYC 1 cut(s) 939
BarI GAAGNNNNNNTAC 2 cut(s) 752, 784
BbvI GCAGC 1 cut(s) 172
BccI CCATC 7 cut(s) 526, 665, 798, 809, 854, 1001, 1021
BceAI ACGGC 1 cut(s) 455
BcgI CGANNNNNNTGC 2 cut(s) 84, 118
BciT130I CCWGG 2 cut(s) 773, 969
BclI TGATCA 1 cut(s) 316
BcnI CCSGG 1 cut(s) 208
BcoDI GTCTC 6 cut(s) 16, 597, 632, 687, 1235, 1258
BfaI CTAG 3 cut(s) 437, 569, 678
BfoI RGCGCY 1 cut(s) 985
BfrI CTTAAG 1 cut(s) 869
BglI GCCNNNNNGGC 1 cut(s) 990
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme1390I CCNGG 3 cut(s) 208, 773, 969
Bme18I GGWCC 3 cut(s) 949, 1030, 1279
BmgT120I GGNCC 4 cut(s) 433, 949, 1030, 1279
BmiI GGNNCC 3 cut(s) 117, 451, 895
BmrFI CCNGG 3 cut(s) 208, 773, 969
BmrI ACTGGG 1 cut(s) 97
BmsI GCATC 5 cut(s) 110, 126, 546, 715, 1002
BmuI ACTGGG 1 cut(s) 97
Bpu14I TTCGAA 2 cut(s) 904, 1124
BpuEI CTTGAG 6 cut(s) 54, 125, 545, 563, 740, 1046
BpuMI CCSGG 1 cut(s) 208
BsaBI GATNNNNATC 1 cut(s) 729
BsaI GGTCTC 1 cut(s) 1258
BsaJI CCNNGG 2 cut(s) 967, 968
BsaWI WCCGGW 1 cut(s) 1037
Bsc4I CCNNNNNNNGG 7 cut(s) 207, 288, 289, 524, 778, 815, 1044
Bse1I ACTGG 1 cut(s) 92
Bse3DI GCAATG 4 cut(s) 102, 130, 413, 1103
Bse8I GATNNNNATC 1 cut(s) 729
BseBI CCWGG 2 cut(s) 773, 969
BseDI CCNNGG 2 cut(s) 967, 968
BseGI GGATG 1 cut(s) 809
BseJI GATNNNNATC 1 cut(s) 729
BseLI CCNNNNNNNGG 7 cut(s) 207, 288, 289, 524, 778, 815, 1044
BseMI GCAATG 4 cut(s) 102, 130, 413, 1103
BseNI ACTGG 1 cut(s) 92
BseSI GKGCMC 1 cut(s) 480
BseXI GCAGC 1 cut(s) 172
BseYI CCCAGC 1 cut(s) 119
BsgI GTGCAG 1 cut(s) 1100
BshFI GGCC 5 cut(s) 200, 254, 434, 808, 845
BshNI GGYRCC 1 cut(s) 449
BsiSI CCGG 2 cut(s) 207, 1038
BslFI GGGAC 1 cut(s) 986
BslI CCNNNNNNNGG 7 cut(s) 207, 288, 289, 524, 778, 815, 1044
BsmAI GTCTC 6 cut(s) 16, 597, 632, 687, 1235, 1258
BsmFI GGGAC 1 cut(s) 986
BsmI GAATGC 2 cut(s) 662, 832
BsnI GGCC 5 cut(s) 200, 254, 434, 808, 845
Bso31I GGTCTC 1 cut(s) 1258
Bsp119I TTCGAA 2 cut(s) 904, 1124
Bsp1286I GDGCHC 2 cut(s) 480, 939
Bsp1407I TGTACA 1 cut(s) 1069
Bsp143I GATC 3 cut(s) 115, 153, 316
BspACI CCGC 1 cut(s) 800
BspANI GGCC 5 cut(s) 200, 254, 434, 808, 845
BspHI TCATGA 1 cut(s) 733
BspLI GGNNCC 3 cut(s) 117, 451, 895
BspPI GGATC 3 cut(s) 110, 123, 161
BspT104I TTCGAA 2 cut(s) 904, 1124
BspT107I GGYRCC 1 cut(s) 449
BspTI CTTAAG 1 cut(s) 869
BspTNI GGTCTC 1 cut(s) 1258
BsrDI GCAATG 4 cut(s) 102, 130, 413, 1103
BsrGI TGTACA 1 cut(s) 1069
BsrI ACTGG 1 cut(s) 92
BssECI CCNNGG 2 cut(s) 967, 968
BssMI GATC 3 cut(s) 115, 153, 316
Bst2UI CCWGG 2 cut(s) 773, 969
Bst6I CTCTTC 1 cut(s) 906
BstAFI CTTAAG 1 cut(s) 869
BstAPI GCANNNNNTGC 1 cut(s) 185
BstAUI TGTACA 1 cut(s) 1069
BstBI TTCGAA 2 cut(s) 904, 1124
BstC8I GCNNGC 1 cut(s) 448
BstDEI CTNAG 3 cut(s) 623, 997, 1017
BstEII GGTNACC 1 cut(s) 767
BstF5I GGATG 1 cut(s) 809
BstH2I RGCGCY 1 cut(s) 985
BstHHI GCGC 1 cut(s) 984
BstKTI GATC 3 cut(s) 118, 156, 319
BstMAI GTCTC 6 cut(s) 16, 597, 632, 687, 1235, 1258
BstMBI GATC 3 cut(s) 115, 153, 316
BstMWI GCNNNNNNNGC 3 cut(s) 185, 990, 999
BstNI CCWGG 2 cut(s) 773, 969
BstNSI RCATGY 2 cut(s) 30, 281
BstPI GGTNACC 1 cut(s) 767
BstSCI CCNGG 3 cut(s) 206, 771, 967
BstSLI GKGCMC 1 cut(s) 480
BstV1I GCAGC 1 cut(s) 172
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BsuRI GGCC 5 cut(s) 200, 254, 434, 808, 845
BtgZI GCGATG 3 cut(s) 87, 289, 1132
BtsCI GGATG 1 cut(s) 809
BtsIMutI CAGTG 1 cut(s) 939
Cac8I GCNNGC 1 cut(s) 448
CaiI CAGNNNCTG 1 cut(s) 185
CciI TCATGA 1 cut(s) 733
CfoI GCGC 1 cut(s) 984
Cfr13I GGNCC 4 cut(s) 433, 949, 1030, 1279
CseI GACGC 1 cut(s) 185
Csp6I GTAC 6 cut(s) 675, 913, 925, 1070, 1084, 1171
CviAII CATG 7 cut(s) 27, 65, 193, 278, 734, 1087, 1204
CviQI GTAC 6 cut(s) 675, 913, 925, 1070, 1084, 1171
DdeI CTNAG 3 cut(s) 623, 997, 1017
DpnI GATC 3 cut(s) 117, 155, 318
DpnII GATC 3 cut(s) 115, 153, 316
EaeI YGGCCR 1 cut(s) 843
Eam1104I CTCTTC 1 cut(s) 906
EarI CTCTTC 1 cut(s) 906
Eco147I AGGCCT 1 cut(s) 200
Eco24I GRGCYC 1 cut(s) 939
Eco31I GGTCTC 1 cut(s) 1258
Eco32I GATATC 1 cut(s) 337
Eco47I GGWCC 3 cut(s) 949, 1030, 1279
Eco57I CTGAAG 1 cut(s) 249
Eco91I GGTNACC 1 cut(s) 767
EcoO109I RGGNCCY 1 cut(s) 433
EcoO65I GGTNACC 1 cut(s) 767
EcoRI GAATTC 1 cut(s) 234
EcoRII CCWGG 2 cut(s) 771, 967
EcoRV GATATC 1 cut(s) 337
EcoT38I GRGCYC 1 cut(s) 939
FaeI CATG 7 cut(s) 30, 68, 196, 281, 737, 1090, 1207
FalI AAGNNNNNCTT 4 cut(s) 153, 185, 912, 944
FaqI GGGAC 1 cut(s) 986
FatI CATG 7 cut(s) 26, 64, 192, 277, 733, 1086, 1203
FauI CCCGC 1 cut(s) 793
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 1 cut(s) 816
FriOI GRGCYC 1 cut(s) 939
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 3 cut(s) 437, 569, 678
GlaI GCGC 1 cut(s) 983
GluI GCNGC 1 cut(s) 186
GsaI CCCAGC 1 cut(s) 123
HaeII RGCGCY 1 cut(s) 985
HaeIII GGCC 5 cut(s) 200, 254, 434, 808, 845
HapII CCGG 2 cut(s) 207, 1038
HgaI GACGC 1 cut(s) 185
HhaI GCGC 1 cut(s) 984
Hin1II CATG 7 cut(s) 30, 68, 196, 281, 737, 1090, 1207
Hin6I GCGC 1 cut(s) 982
HinP1I GCGC 1 cut(s) 982
HincII GTYRAC 2 cut(s) 85, 607
HindII GTYRAC 2 cut(s) 85, 607
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 2 cut(s) 9, 500
HpaI GTTAAC 1 cut(s) 607
HpaII CCGG 2 cut(s) 207, 1038
HphI GGTGA 3 cut(s) 304, 830, 1027
Hpy166II GTNNAC 4 cut(s) 85, 496, 607, 925
Hpy188I TCNGA 3 cut(s) 523, 536, 1279
Hpy188III TCNNGA 9 cut(s) 55, 157, 547, 562, 580, 692, 734, 757, 1024
Hpy8I GTNNAC 4 cut(s) 85, 496, 607, 925
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 7 cut(s) 190, 490, 518, 628, 754, 1192, 1215
HpyCH4IV ACGT 1 cut(s) 1273
HpyCH4V TGCA 6 cut(s) 418, 662, 728, 1081, 1180, 1285
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 990, 999
HpyF3I CTNAG 3 cut(s) 623, 997, 1017
HpySE526I ACGT 1 cut(s) 1273
Hsp92II CATG 7 cut(s) 30, 68, 196, 281, 737, 1090, 1207
HspAI GCGC 1 cut(s) 982
Ksp22I TGATCA 1 cut(s) 316
KspAI GTTAAC 1 cut(s) 607
Kzo9I GATC 3 cut(s) 115, 153, 316
LmnI GCTCC 1 cut(s) 92
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 5 cut(s) 110, 126, 546, 715, 1002
MaeI CTAG 3 cut(s) 437, 569, 678
MaeII ACGT 1 cut(s) 1273
MaeIII GTNAC 5 cut(s) 22, 377, 750, 767, 818
MalI GATC 3 cut(s) 117, 155, 318
MboI GATC 3 cut(s) 115, 153, 316
MboII GAAGA 3 cut(s) 255, 893, 1244
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 2 cut(s) 480, 939
MlsI TGGCCA 1 cut(s) 845
MluNI TGGCCA 1 cut(s) 845
MlyI GAGTC 1 cut(s) 18
MmeI TCCRAC 3 cut(s) 211, 334, 655
MnlI CCTC 7 cut(s) 175, 265, 883, 909, 940, 1043, 1185
Mox20I TGGCCA 1 cut(s) 845
MroXI GAANNNNTTC 1 cut(s) 170
MscI TGGCCA 1 cut(s) 845
MseI TTAA 3 cut(s) 371, 606, 870
Msp20I TGGCCA 1 cut(s) 845
MspCI CTTAAG 1 cut(s) 869
MspI CCGG 2 cut(s) 207, 1038
MspR9I CCNGG 3 cut(s) 208, 773, 969
Mva1269I GAATGC 2 cut(s) 662, 832
MvaI CCWGG 2 cut(s) 773, 969
MwoI GCNNNNNNNGC 3 cut(s) 185, 990, 999
NciI CCSGG 1 cut(s) 208
NdeII GATC 3 cut(s) 115, 153, 316
NlaIII CATG 7 cut(s) 30, 68, 196, 281, 737, 1090, 1207
NlaIV GGNNCC 3 cut(s) 117, 451, 895
NmuCI GTSAC 2 cut(s) 750, 818
NspI RCATGY 2 cut(s) 30, 281
NspV TTCGAA 2 cut(s) 904, 1124
PagI TCATGA 1 cut(s) 733
PasI CCCWGGG 1 cut(s) 968
PceI AGGCCT 1 cut(s) 200
PciI ACATGT 1 cut(s) 26
PctI GAATGC 2 cut(s) 662, 832
PdmI GAANNNNTTC 1 cut(s) 170
PfeI GAWTC 1 cut(s) 500
PflMI CCANNNNNTGG 1 cut(s) 778
PkrI GCNGC 1 cut(s) 187
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
PscI ACATGT 1 cut(s) 26
Psp6I CCWGG 2 cut(s) 771, 967
PspEI GGTNACC 1 cut(s) 767
PspFI CCCAGC 1 cut(s) 119
PspGI CCWGG 2 cut(s) 771, 967
PspN4I GGNNCC 3 cut(s) 117, 451, 895
PspPI GGNCC 4 cut(s) 433, 949, 1030, 1279
PstNI CAGNNNCTG 1 cut(s) 185
PsuI RGATCY 1 cut(s) 115
RsaI GTAC 6 cut(s) 676, 914, 926, 1071, 1085, 1172
RsaNI GTAC 6 cut(s) 675, 913, 925, 1070, 1084, 1171
SaqAI TTAA 3 cut(s) 371, 606, 870
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 3 cut(s) 115, 153, 316
Sau96I GGNCC 4 cut(s) 433, 949, 1030, 1279
SchI GAGTC 1 cut(s) 18
ScrFI CCNGG 3 cut(s) 208, 773, 969
SduI GDGCHC 2 cut(s) 480, 939
SfaNI GCATC 5 cut(s) 110, 126, 546, 715, 1002
SfuI TTCGAA 2 cut(s) 904, 1124
SinI GGWCC 3 cut(s) 949, 1030, 1279
SmlI CTYRAG 7 cut(s) 69, 140, 560, 578, 755, 869, 1061
SmoI CTYRAG 7 cut(s) 69, 140, 560, 578, 755, 869, 1061
SseBI AGGCCT 1 cut(s) 200
SsiI CCGC 1 cut(s) 800
SspMI CTAG 3 cut(s) 437, 569, 678
StuI AGGCCT 1 cut(s) 200
StyD4I CCNGG 3 cut(s) 206, 771, 967
TaiI ACGT 1 cut(s) 1276
TaqI TCGA 5 cut(s) 7, 174, 691, 904, 1124
TaqII GACCGA 1 cut(s) 211
TatI WGTACW 2 cut(s) 1069, 1083
TfiI GAWTC 1 cut(s) 500
Tru1I TTAA 3 cut(s) 371, 606, 870
Tru9I TTAA 3 cut(s) 371, 606, 870
TscAI CASTG 1 cut(s) 946
TseFI GTSAC 2 cut(s) 750, 818
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 2 cut(s) 750, 818
TspDTI ATGAA 2 cut(s) 209, 456
TspRI CASTG 1 cut(s) 946
Van91I CCANNNNNTGG 1 cut(s) 778
Vha464I CTTAAG 1 cut(s) 869
VpaK11BI GGWCC 3 cut(s) 949, 1030, 1279
XapI RAATTY 4 cut(s) 234, 656, 837, 851
XceI RCATGY 2 cut(s) 30, 281
XcmI CCANNNNNNNNNTGG 2 cut(s) 247, 838
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 3 cut(s) 437, 569, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.