Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039255.1

Orthogroup ID

OG0001736

Physical Location & Seq

Genomic Coordinates Reverse (-)

2168 .. 3049

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039255.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atgctcaagatactaggtttgctcaagagcaataagtctccatttttcgttaacatatatcccttccttagtctccaacagagctctcatttccccaaagaatttgcattctttgatggtactagcaaacctgttcgagacaacaaccacgaatataccaatgtgtttgatgcaaatcatgacacacttatttggtcactcaagaaggttggttaccaggacttggacatagttattggagaagcgggatggcctaccgatggtgacaagaatgccaataaaattttggcgaagaaattctatgatggacttatcaagaaattagcaaaggcggacggaacccctcttcgaaaagggtacttggaagtgtacctatttgggctcactgacgaggaccaaaaaagtattgccccaggggactttgagcgccactggggcatcttaggctatgatggaaaacccaagttcccaatggacctcaccgggaaagggaacaataaaatgctcaaggctgtacaaggagtggagtacatggagaagcaatggtgtgtcttgaacagcgatgttcgaaatggcagtattttacaaaccgaactcaattacgcttgttctcagacagattgcacatctttaggaggtggaaggtcatgcgatttggatttgcaagggaaagtctcctatgctttcaattctttcttccaaagcagagaccaagacgttcggacctgcaattttgatggcaagggaacgattacaaaagacgatccttctaaaggaacttgcgtattcaatatacagatttacagtgctggagtgaggcatcaagtgatctatgcattgagtatctttgcaggactagtcttgatgattttctcacattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009664 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048046 GO:0055044 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

293

Amino Acids

32.84

Weight (kDa)

7.58

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64790
fragaria_vesca	FvH4_1g22980 FvH4_1g22990
malus_domestica	MD01G1021100.v1.1 MD01G1021200.v1.1 MD15G1330800.v1.1 MD15G1330900.v1.1
prunus_persica	Prupe.6G168700_v2.0.a1 Prupe.6G168800_v2.0.a1
pyrus_communis	pycom01g05030 pycom15g29440
rosa_chinensis	RchiOBHm_Chr2g0117511 RchiOBHm_Chr2g0117521 RchiOBHm_Chr2g0117531
rosa_laevigata	RLG00000018351 RLG00000018352 RLG00000018353
rosa_multiflora	Rmu_co8432351.1_g000001 Rmu_sc0001617.1_g000014 Rmu_sc0003454.1_g000003 Rmu_sc0003454.1_g000004 Rmu_sc0003454.1_g000018 Rmu_sc0022810.1_g000001 Rmu_sc0039255.1_g000002
rosa_roxburghii	Rroxscaffold_2G00126440 Rroxscaffold_2G00126450 Rroxscaffold_2G00126480
rosa_rugosa	Rorug02G0212800 Rorug02G0212900 Rorug02G0213000
rosa_samantha	Rh2AG268100 Rh2AG268300 Rh2AG268400 Rh2BG280500 Rh2BG280700 Rh2BG280800 Rh2CG271500 Rh2CG271600 Rh2CG271700 Rh2DG275300 Rh2DG275500 Rh2DG275600 Rh2DG294800 Rh2DG295000 Rh2DG295100
rosa_wichuraiana	Rw2G021220 Rw2G021230 Rw2G021240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	734
AccB7I	CCANNNNNTGG	1 cut(s)	223
AciI	CCGC	2 cut(s)	245, 332
AclWI	GGATC	1 cut(s)	758
AcsI	RAATTY	3 cut(s)	101, 282, 296
AfaI	GTAC	5 cut(s)	121, 359, 371, 516, 530
AfiI	CCNNNNNNNGG	4 cut(s)	223, 260, 489, 773
AgsI	TTSAA	3 cut(s)	556, 688, 790
AhlI	ACTAGT	1 cut(s)	856
AjnI	CCWGG	2 cut(s)	216, 412
AluBI	AGCT	1 cut(s)	84
AluI	AGCT	1 cut(s)	84
Alw21I	GWGCWC	1 cut(s)	86
Alw26I	GTCTC	5 cut(s)	42, 77, 132, 679, 702
AlwI	GGATC	1 cut(s)	758
AoxI	GGCC	1 cut(s)	251
ApoI	RAATTY	3 cut(s)	101, 282, 296
Asp700I	GAANNNNTTC	1 cut(s)	296
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	3 cut(s)	394, 475, 723
AsuC2I	CCSGG	1 cut(s)	484
AsuHPI	GGTGA	2 cut(s)	275, 472
AsuII	TTCGAA	2 cut(s)	349, 568
AvaII	GGWCC	3 cut(s)	394, 475, 723
BanII	GRGCYC	2 cut(s)	86, 384
BarI	GAAGNNNNNNTAC	2 cut(s)	197, 229
Bbv12I	GWGCWC	1 cut(s)	86
BccI	CCATC	6 cut(s)	110, 243, 254, 299, 446, 731
BciT130I	CCWGG	2 cut(s)	218, 414
BcnI	CCSGG	1 cut(s)	484
BcoDI	GTCTC	5 cut(s)	42, 77, 132, 679, 702
BcuI	ACTAGT	1 cut(s)	856
BfaI	CTAG	3 cut(s)	14, 123, 857
BfoI	RGCGCY	1 cut(s)	430
BfuAI	ACCTGC	1 cut(s)	734
BglI	GCCNNNNNGGC	1 cut(s)	435
Bme1390I	CCNGG	3 cut(s)	218, 414, 484
Bme18I	GGWCC	3 cut(s)	394, 475, 723
BmgT120I	GGNCC	3 cut(s)	394, 475, 723
BmiI	GGNNCC	1 cut(s)	340
BmrFI	CCNGG	3 cut(s)	218, 414, 484
BmrI	ACTGGG	1 cut(s)	442
BmsI	GCATC	3 cut(s)	160, 447, 829
BmuI	ACTGGG	1 cut(s)	442
BpmI	CTGGAG	1 cut(s)	831
Bpu14I	TTCGAA	2 cut(s)	349, 568
BpuEI	CTTGAG	3 cut(s)	8, 185, 491
BpuMI	CCSGG	1 cut(s)	484
BsaBI	GATNNNNATC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	702
BsaJI	CCNNGG	2 cut(s)	412, 413
Bsc4I	CCNNNNNNNGG	4 cut(s)	223, 260, 489, 773
Bse1I	ACTGG	1 cut(s)	437
Bse3DI	GCAATG	1 cut(s)	548
Bse8I	GATNNNNATC	1 cut(s)	174
BseBI	CCWGG	2 cut(s)	218, 414
BseDI	CCNNGG	2 cut(s)	412, 413
BseGI	GGATG	1 cut(s)	254
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	4 cut(s)	223, 260, 489, 773
BseMI	GCAATG	1 cut(s)	548
BseMII	CTCAG	1 cut(s)	626
BseNI	ACTGG	1 cut(s)	437
BshFI	GGCC	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	483
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	4 cut(s)	223, 260, 489, 773
BsmAI	GTCTC	5 cut(s)	42, 77, 132, 679, 702
BsmFI	GGGAC	1 cut(s)	431
BsmI	GAATGC	2 cut(s)	107, 277
BsnI	GGCC	1 cut(s)	253
Bso31I	GGTCTC	1 cut(s)	702
Bsp119I	TTCGAA	2 cut(s)	349, 568
Bsp1286I	GDGCHC	2 cut(s)	86, 384
Bsp1407I	TGTACA	1 cut(s)	514
Bsp143I	GATC	2 cut(s)	763, 828
BspACI	CCGC	2 cut(s)	245, 332
BspANI	GGCC	1 cut(s)	253
BspCNI	CTCAG	1 cut(s)	625
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	340
BspMI	ACCTGC	1 cut(s)	734
BspPI	GGATC	1 cut(s)	758
BspT104I	TTCGAA	2 cut(s)	349, 568
BspTNI	GGTCTC	1 cut(s)	702
BsrDI	GCAATG	1 cut(s)	548
BsrGI	TGTACA	1 cut(s)	514
BsrI	ACTGG	1 cut(s)	437
BssECI	CCNNGG	2 cut(s)	412, 413
BssMI	GATC	2 cut(s)	763, 828
Bst2UI	CCWGG	2 cut(s)	218, 414
Bst4CI	ACNGT	1 cut(s)	806
Bst6I	CTCTTC	1 cut(s)	351
BstAUI	TGTACA	1 cut(s)	514
BstBI	TTCGAA	2 cut(s)	349, 568
BstDEI	CTNAG	3 cut(s)	68, 442, 612
BstEII	GGTNACC	1 cut(s)	212
BstENI	CCTNNNNNAGG	1 cut(s)	771
BstF5I	GGATG	1 cut(s)	254
BstH2I	RGCGCY	1 cut(s)	430
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	2 cut(s)	766, 831
BstMAI	GTCTC	5 cut(s)	42, 77, 132, 679, 702
BstMBI	GATC	2 cut(s)	763, 828
BstMWI	GCNNNNNNNGC	2 cut(s)	435, 444
BstNI	CCWGG	2 cut(s)	218, 414
BstPI	GGTNACC	1 cut(s)	212
BstSCI	CCNGG	3 cut(s)	216, 412, 482
BsuRI	GGCC	1 cut(s)	253
BtgZI	GCGATG	1 cut(s)	576
BtsCI	GGATG	1 cut(s)	254
BtsIMutI	CAGTG	3 cut(s)	384, 430, 811
BveI	ACCTGC	1 cut(s)	734
CciI	TCATGA	1 cut(s)	178
CfoI	GCGC	1 cut(s)	429
Cfr13I	GGNCC	3 cut(s)	394, 475, 723
Csp6I	GTAC	5 cut(s)	120, 358, 370, 515, 529
CviAII	CATG	3 cut(s)	179, 532, 648
CviJI	RGCY	5 cut(s)	84, 253, 382, 447, 512
CviKI_1	RGCY	5 cut(s)	84, 253, 382, 447, 512
CviQI	GTAC	5 cut(s)	120, 358, 370, 515, 529
DdeI	CTNAG	3 cut(s)	68, 442, 612
DpnI	GATC	2 cut(s)	765, 830
DpnII	GATC	2 cut(s)	763, 828
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
EciI	GGCGGA	1 cut(s)	347
Ecl136II	GAGCTC	1 cut(s)	84
Eco24I	GRGCYC	2 cut(s)	86, 384
Eco31I	GGTCTC	1 cut(s)	702
Eco47I	GGWCC	3 cut(s)	394, 475, 723
Eco53kI	GAGCTC	1 cut(s)	84
Eco91I	GGTNACC	1 cut(s)	212
EcoICRI	GAGCTC	1 cut(s)	84
EcoNI	CCTNNNNNAGG	1 cut(s)	771
EcoO65I	GGTNACC	1 cut(s)	212
EcoRII	CCWGG	2 cut(s)	216, 412
EcoT22I	ATGCAT	1 cut(s)	838
EcoT38I	GRGCYC	2 cut(s)	86, 384
FaeI	CATG	3 cut(s)	182, 535, 651
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	3 cut(s)	178, 531, 647
FauI	CCCGC	1 cut(s)	238
FokI	GGATG	1 cut(s)	261
FriOI	GRGCYC	2 cut(s)	86, 384
FspBI	CTAG	3 cut(s)	14, 123, 857
GlaI	GCGC	1 cut(s)	428
GsuI	CTGGAG	1 cut(s)	831
HaeII	RGCGCY	1 cut(s)	430
HaeIII	GGCC	1 cut(s)	253
HapII	CCGG	1 cut(s)	483
HhaI	GCGC	1 cut(s)	429
Hin1II	CATG	3 cut(s)	182, 535, 651
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HpaI	GTTAAC	1 cut(s)	52
HpaII	CCGG	1 cut(s)	483
HphI	GGTGA	2 cut(s)	275, 472
Hpy166II	GTNNAC	2 cut(s)	52, 370
Hpy188I	TCNGA	2 cut(s)	615, 723
Hpy188III	TCNNGA	8 cut(s)	7, 25, 137, 179, 202, 316, 553, 862
Hpy8I	GTNNAC	2 cut(s)	52, 370
HpyAV	CCTTC	4 cut(s)	73, 199, 636, 777
HpyCH4III	ACNGT	1 cut(s)	806
HpyCH4IV	ACGT	1 cut(s)	717
HpyCH4V	TGCA	7 cut(s)	107, 173, 624, 664, 729, 836, 851
HpyF10VI	GCNNNNNNNGC	2 cut(s)	435, 444
HpyF3I	CTNAG	3 cut(s)	68, 442, 612
HpySE526I	ACGT	1 cut(s)	717
Hsp92II	CATG	3 cut(s)	182, 535, 651
HspAI	GCGC	1 cut(s)	427
KspAI	GTTAAC	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	763, 828
LweI	GCATC	3 cut(s)	160, 447, 829
MaeI	CTAG	3 cut(s)	14, 123, 857
MaeII	ACGT	1 cut(s)	717
MaeIII	GTNAC	3 cut(s)	195, 212, 263
MalI	GATC	2 cut(s)	765, 830
MboI	GATC	2 cut(s)	763, 828
MboII	GAAGA	3 cut(s)	304, 338, 688
MhlI	GDGCHC	2 cut(s)	86, 384
MluCI	AATT	7 cut(s)	101, 282, 296, 320, 598, 688, 730
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	5 cut(s)	354, 385, 488, 629, 810
Mph1103I	ATGCAT	1 cut(s)	838
MroXI	GAANNNNTTC	1 cut(s)	296
MseI	TTAA	2 cut(s)	51, 880
MspI	CCGG	1 cut(s)	483
MspR9I	CCNGG	3 cut(s)	218, 414, 484
Mva1269I	GAATGC	2 cut(s)	107, 277
MvaI	CCWGG	2 cut(s)	218, 414
MwoI	GCNNNNNNNGC	2 cut(s)	435, 444
NciI	CCSGG	1 cut(s)	484
NdeII	GATC	2 cut(s)	763, 828
NlaIII	CATG	3 cut(s)	182, 535, 651
NlaIV	GGNNCC	1 cut(s)	340
NmuCI	GTSAC	2 cut(s)	195, 263
NsiI	ATGCAT	1 cut(s)	838
NspV	TTCGAA	2 cut(s)	349, 568
PagI	TCATGA	1 cut(s)	178
PasI	CCCWGGG	1 cut(s)	413
PctI	GAATGC	2 cut(s)	107, 277
PdmI	GAANNNNTTC	1 cut(s)	296
PflMI	CCANNNNNTGG	1 cut(s)	223
Psp124BI	GAGCTC	1 cut(s)	86
Psp6I	CCWGG	2 cut(s)	216, 412
PspEI	GGTNACC	1 cut(s)	212
PspGI	CCWGG	2 cut(s)	216, 412
PspN4I	GGNNCC	1 cut(s)	340
PspPI	GGNCC	3 cut(s)	394, 475, 723
RsaI	GTAC	5 cut(s)	121, 359, 371, 516, 530
RsaNI	GTAC	5 cut(s)	120, 358, 370, 515, 529
SacI	GAGCTC	1 cut(s)	86
SaqAI	TTAA	2 cut(s)	51, 880
Sau3AI	GATC	2 cut(s)	763, 828
Sau96I	GGNCC	3 cut(s)	394, 475, 723
ScrFI	CCNGG	3 cut(s)	218, 414, 484
SduI	GDGCHC	2 cut(s)	86, 384
SfaNI	GCATC	3 cut(s)	160, 447, 829
SfuI	TTCGAA	2 cut(s)	349, 568
SinI	GGWCC	3 cut(s)	394, 475, 723
SmlI	CTYRAG	4 cut(s)	5, 23, 200, 506
SmoI	CTYRAG	4 cut(s)	5, 23, 200, 506
SpeI	ACTAGT	1 cut(s)	856
Sse9I	AATT	7 cut(s)	101, 282, 296, 320, 598, 688, 730
SsiI	CCGC	2 cut(s)	245, 332
SspMI	CTAG	3 cut(s)	14, 123, 857
SstI	GAGCTC	1 cut(s)	86
StyD4I	CCNGG	3 cut(s)	216, 412, 482
TaaI	ACNGT	1 cut(s)	806
TaiI	ACGT	1 cut(s)	720
TaqI	TCGA	3 cut(s)	136, 349, 568
TasI	AATT	7 cut(s)	101, 282, 296, 320, 598, 688, 730
TatI	WGTACW	2 cut(s)	514, 528
Tru1I	TTAA	2 cut(s)	51, 880
Tru9I	TTAA	2 cut(s)	51, 880
TscAI	CASTG	3 cut(s)	391, 437, 811
TseFI	GTSAC	2 cut(s)	195, 263
Tsp45I	GTSAC	2 cut(s)	195, 263
TspGWI	ACGGA	1 cut(s)	351
TspRI	CASTG	3 cut(s)	391, 437, 811
Van91I	CCANNNNNTGG	1 cut(s)	223
VpaK11BI	GGWCC	3 cut(s)	394, 475, 723
XagI	CCTNNNNNAGG	1 cut(s)	771
XapI	RAATTY	3 cut(s)	101, 282, 296
XcmI	CCANNNNNNNNNTGG	2 cut(s)	283, 469
XmnI	GAANNNNTTC	1 cut(s)	296
XspI	CTAG	3 cut(s)	14, 123, 857
Zsp2I	ATGCAT	1 cut(s)	838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.