Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8432351.1

Orthogroup ID

OG0001736

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1369

Gene Structure 1369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8432351.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1100 bp

atggctcgagccgcggttcttgtatggctcttgtcgatgatgttagtctcaatcgatcttgcacaaggttatggtatcaactggggtgcaatggctactaaccctttgcctccaaagaaagttgttgcaatgctcaaggaaaatgggttcaagaaagtgaagcttttcgatgcagatccttcaatgatggacgcattggccggttcaggccttgaggttatggttgggatccccaatgacaagttaaaatcacttgctaacgattatggaaatgctaaagcctgggtgaaagaaaatgtgaccagctatttgtatgatgggggcgtcgctatcaaatatgtggctgttggaaacgagccattcttaacaagttacaacgggagttacgttaagactacttacccggcaatgcaaaacatccaaaaggccttgtatgattatagcaaggatattggaacgaaaatcaaggttaccactcccttcaatgcagatgtgtatgaatcgaaatcagacaagccatcagatggtcgtttccgaaaggacattaaggatagtatggtgcagattctaaaatttctcaaggaagcgaagtcgccatttcttgttaacatataccccttccttagtctggccctaagctctgattttcccagggagtttgctttctttgatgatggtggcaacggagttcaagacaacaacatccagtacaaaaatgtctttgatgcaaatttagatacatgttacaatgcactgaaacaggaaggttttcaggatttggaaattcaaattggggaggtcggatggcctacagatggtaacaaggatgccaacatcaaattggcgcagaagttttatgatggcctgttcaagaaactagcaaaaggggagggaacccctcttcgaaaaggaaacccagaagtgtaccttttcagcctttttgatgagaacaccaaaagtattgccccaggggacttcgagcgtcactggggcatatttcgttatgacggacaacctaagtttccaatggacctcagcggaaaggggcaaaaccaaatgctcaagcctgtaaaaggggtggaaatgatggacaagcaatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009664 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048046 GO:0055044 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

366

Amino Acids

40.85

Weight (kDa)

7.59

Isoelectric Point (pI)

20.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64790
fragaria_vesca	FvH4_1g22980 FvH4_1g22990
malus_domestica	MD01G1021100.v1.1 MD01G1021200.v1.1 MD15G1330800.v1.1 MD15G1330900.v1.1
prunus_persica	Prupe.6G168700_v2.0.a1 Prupe.6G168800_v2.0.a1
pyrus_communis	pycom01g05030 pycom15g29440
rosa_chinensis	RchiOBHm_Chr2g0117511 RchiOBHm_Chr2g0117521 RchiOBHm_Chr2g0117531
rosa_laevigata	RLG00000018351 RLG00000018352 RLG00000018353
rosa_multiflora	Rmu_co8432351.1_g000001 Rmu_sc0001617.1_g000014 Rmu_sc0003454.1_g000003 Rmu_sc0003454.1_g000004 Rmu_sc0003454.1_g000018 Rmu_sc0022810.1_g000001 Rmu_sc0039255.1_g000002
rosa_roxburghii	Rroxscaffold_2G00126440 Rroxscaffold_2G00126450 Rroxscaffold_2G00126480
rosa_rugosa	Rorug02G0212800 Rorug02G0212900 Rorug02G0213000
rosa_samantha	Rh2AG268100 Rh2AG268300 Rh2AG268400 Rh2BG280500 Rh2BG280700 Rh2BG280800 Rh2CG271500 Rh2CG271600 Rh2CG271700 Rh2DG275300 Rh2DG275500 Rh2DG275600 Rh2DG294800 Rh2DG295000 Rh2DG295100
rosa_wichuraiana	Rw2G021220 Rw2G021230 Rw2G021240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	524
AccII	CGCG	1 cut(s)	14
AciI	CCGC	3 cut(s)	12, 14, 1038
AclWI	GGATC	3 cut(s)	170, 223, 236
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	3 cut(s)	572, 730, 783
AcyI	GRCGYC	1 cut(s)	324
AfaI	GTAC	2 cut(s)	710, 926
AfiI	CCNNNNNNNGG	4 cut(s)	524, 628, 815, 1073
AflIII	ACRYGT	1 cut(s)	740
AgsI	TTSAA	6 cut(s)	151, 183, 484, 692, 788, 871
AjnI	CCWGG	3 cut(s)	281, 650, 967
AjuI	GAANNNNNNNTTGG	2 cut(s)	774, 806
AloI	GAACNNNNNNTCC	2 cut(s)	131, 163
AluBI	AGCT	3 cut(s)	163, 306, 639
AluI	AGCT	3 cut(s)	163, 306, 639
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	3 cut(s)	170, 223, 236
Ama87I	CYCGRG	1 cut(s)	6
AoxI	GGCC	6 cut(s)	198, 208, 426, 630, 806, 862
ApoI	RAATTY	3 cut(s)	572, 730, 783
ArsI	GACNNNNNNTTYG	2 cut(s)	292, 324
Asp700I	GAANNNNTTC	2 cut(s)	164, 768
AspLEI	GCGC	1 cut(s)	847
AspS9I	GGNCC	2 cut(s)	631, 1030
AsuC2I	CCSGG	1 cut(s)	404
AsuHPI	GGTGA	1 cut(s)	298
AsuII	TTCGAA	1 cut(s)	904
AvaI	CYCGRG	1 cut(s)	6
AvaII	GGWCC	1 cut(s)	1030
BamHI	GGATCC	1 cut(s)	228
BbvCI	CCTCAGC	1 cut(s)	1034
BccI	CCATC	9 cut(s)	181, 311, 518, 526, 668, 798, 809, 854, 1081
BciT130I	CCWGG	3 cut(s)	283, 652, 969
BcnI	CCSGG	1 cut(s)	404
BcoDI	GTCTC	1 cut(s)	52
BfaI	CTAG	1 cut(s)	878
BfmI	CTRYAG	1 cut(s)	810
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	4 cut(s)	283, 404, 652, 969
Bme18I	GGWCC	1 cut(s)	1030
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	2 cut(s)	631, 1030
BmiI	GGNNCC	2 cut(s)	230, 895
BmrFI	CCNGG	4 cut(s)	283, 404, 652, 969
BmrI	ACTGGG	2 cut(s)	91, 997
BmsI	GCATC	3 cut(s)	160, 715, 817
BmuI	ACTGGG	2 cut(s)	91, 997
Bpu10I	CCTNAGC	2 cut(s)	635, 1034
Bpu14I	TTCGAA	1 cut(s)	904
BpuEI	CTTGAG	4 cut(s)	119, 233, 563, 1046
BpuMI	CCSGG	1 cut(s)	404
Bsa29I	ATCGAT	1 cut(s)	54
BsaBI	GATNNNNATC	1 cut(s)	174
BsaHI	GRCGYC	1 cut(s)	324
BsaJI	CCNNGG	6 cut(s)	12, 282, 650, 651, 967, 968
Bsc4I	CCNNNNNNNGG	4 cut(s)	524, 628, 815, 1073
Bse118I	RCCGGY	1 cut(s)	200
Bse1I	ACTGG	3 cut(s)	86, 706, 992
Bse3DI	GCAATG	3 cut(s)	96, 135, 414
Bse8I	GATNNNNATC	1 cut(s)	174
BseBI	CCWGG	3 cut(s)	283, 652, 969
BseCI	ATCGAT	1 cut(s)	54
BseDI	CCNNGG	6 cut(s)	12, 282, 650, 651, 967, 968
BseGI	GGATG	4 cut(s)	417, 702, 809, 832
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	4 cut(s)	524, 628, 815, 1073
BseMI	GCAATG	3 cut(s)	96, 135, 414
BseMII	CTCAG	1 cut(s)	1048
BseNI	ACTGG	3 cut(s)	86, 706, 992
BsgI	GTGCAG	1 cut(s)	581
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	6 cut(s)	200, 210, 428, 632, 808, 864
BshVI	ATCGAT	1 cut(s)	54
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	2 cut(s)	201, 404
BslFI	GGGAC	1 cut(s)	986
BslI	CCNNNNNNNGG	4 cut(s)	524, 628, 815, 1073
BsmAI	GTCTC	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	986
BsnI	GGCC	6 cut(s)	200, 210, 428, 632, 808, 864
BsoBI	CYCGRG	1 cut(s)	6
Bsp119I	TTCGAA	1 cut(s)	904
Bsp143I	GATC	3 cut(s)	55, 175, 228
BspACI	CCGC	3 cut(s)	12, 14, 1038
BspANI	GGCC	6 cut(s)	200, 210, 428, 632, 808, 864
BspCNI	CTCAG	1 cut(s)	1047
BspDI	ATCGAT	1 cut(s)	54
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	2 cut(s)	230, 895
BspPI	GGATC	3 cut(s)	170, 223, 236
BspT104I	TTCGAA	1 cut(s)	904
BsrDI	GCAATG	3 cut(s)	96, 135, 414
BsrFI	RCCGGY	1 cut(s)	200
BsrI	ACTGG	3 cut(s)	86, 706, 992
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	6 cut(s)	12, 282, 650, 651, 967, 968
BssMI	GATC	3 cut(s)	55, 175, 228
BssNI	GRCGYC	1 cut(s)	324
Bst2UI	CCWGG	3 cut(s)	283, 652, 969
Bst6I	CTCTTC	1 cut(s)	906
BstACI	GRCGYC	1 cut(s)	324
BstBI	TTCGAA	1 cut(s)	904
BstDEI	CTNAG	4 cut(s)	623, 635, 1017, 1034
BstDSI	CCRYGG	1 cut(s)	12
BstEII	GGTNACC	1 cut(s)	469
BstENI	CCTNNNNNAGG	1 cut(s)	1071
BstF5I	GGATG	4 cut(s)	417, 702, 809, 832
BstFNI	CGCG	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	847
BstKTI	GATC	3 cut(s)	58, 178, 231
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	3 cut(s)	55, 175, 228
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	3 cut(s)	283, 652, 969
BstNSI	RCATGY	1 cut(s)	744
BstPI	GGTNACC	1 cut(s)	469
BstSCI	CCNGG	4 cut(s)	281, 402, 650, 967
BstSFI	CTRYAG	1 cut(s)	810
BstUI	CGCG	1 cut(s)	14
BstX2I	RGATCY	2 cut(s)	175, 228
BstYI	RGATCY	2 cut(s)	175, 228
Bsu15I	ATCGAT	1 cut(s)	54
BsuRI	GGCC	6 cut(s)	200, 210, 428, 632, 808, 864
BsuTUI	ATCGAT	1 cut(s)	54
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	4 cut(s)	417, 702, 809, 832
BtsIMutI	CAGTG	2 cut(s)	752, 985
CfoI	GCGC	1 cut(s)	847
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	2 cut(s)	631, 1030
Cfr42I	CCGCGG	1 cut(s)	15
ClaI	ATCGAT	1 cut(s)	54
CseI	GACGC	3 cut(s)	200, 313, 971
Csp6I	GTAC	2 cut(s)	709, 925
CviAII	CATG	1 cut(s)	741
CviQI	GTAC	2 cut(s)	709, 925
DdeI	CTNAG	4 cut(s)	623, 635, 1017, 1034
DpnI	GATC	3 cut(s)	57, 177, 230
DpnII	GATC	3 cut(s)	55, 175, 228
EaeI	YGGCCR	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	906
EarI	CTCTTC	1 cut(s)	906
Eco147I	AGGCCT	2 cut(s)	210, 428
Eco47I	GGWCC	1 cut(s)	1030
Eco88I	CYCGRG	1 cut(s)	6
Eco91I	GGTNACC	1 cut(s)	469
EcoNI	CCTNNNNNAGG	1 cut(s)	1071
EcoO65I	GGTNACC	1 cut(s)	469
EcoRII	CCWGG	3 cut(s)	281, 650, 967
FaeI	CATG	1 cut(s)	744
FalI	AAGNNNNNCTT	4 cut(s)	147, 179, 912, 944
FaqI	GGGAC	1 cut(s)	986
FatI	CATG	1 cut(s)	740
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	4 cut(s)	404, 689, 816, 839
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	1 cut(s)	878
GlaI	GCGC	1 cut(s)	846
GluI	GCNGC	1 cut(s)	12
HaeIII	GGCC	6 cut(s)	200, 210, 428, 632, 808, 864
HapII	CCGG	2 cut(s)	201, 404
HgaI	GACGC	3 cut(s)	200, 313, 971
HhaI	GCGC	1 cut(s)	847
Hin1I	GRCGYC	1 cut(s)	324
Hin1II	CATG	1 cut(s)	744
Hin6I	GCGC	1 cut(s)	845
HinP1I	GCGC	1 cut(s)	845
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HindIII	AAGCTT	1 cut(s)	161
HinfI	GANTC	2 cut(s)	500, 565
HpaI	GTTAAC	1 cut(s)	607
HpaII	CCGG	2 cut(s)	201, 404
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	2 cut(s)	607, 925
Hpy188I	TCNGA	5 cut(s)	511, 523, 536, 643, 803
Hpy188III	TCNNGA	4 cut(s)	151, 692, 773, 871
Hpy8I	GTNNAC	2 cut(s)	607, 925
Hpy99I	CGWCG	1 cut(s)	329
HpyAV	CCTTC	4 cut(s)	189, 490, 628, 758
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	9 cut(s)	62, 89, 128, 173, 412, 488, 562, 728, 752
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	4 cut(s)	623, 635, 1017, 1034
HpySE526I	ACGT	1 cut(s)	387
Hsp92I	GRCGYC	1 cut(s)	324
Hsp92II	CATG	1 cut(s)	744
HspAI	GCGC	1 cut(s)	845
KspAI	GTTAAC	1 cut(s)	607
KspI	CCGCGG	1 cut(s)	15
Kzo9I	GATC	3 cut(s)	55, 175, 228
LweI	GCATC	3 cut(s)	160, 715, 817
MaeI	CTAG	1 cut(s)	878
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	7 cut(s)	298, 371, 383, 469, 743, 818, 983
MalI	GATC	3 cut(s)	57, 177, 230
MboI	GATC	3 cut(s)	55, 175, 228
MboII	GAAGA	1 cut(s)	893
MflI	RGATCY	2 cut(s)	175, 228
MluCI	AATT	5 cut(s)	572, 730, 783, 789, 839
MmeI	TCCRAC	2 cut(s)	328, 781
MnlI	CCTC	6 cut(s)	120, 208, 790, 883, 909, 1043
MroXI	GAANNNNTTC	2 cut(s)	164, 768
MseI	TTAA	5 cut(s)	245, 365, 390, 546, 606
MspA1I	CMGCKG	2 cut(s)	14, 1038
MspI	CCGG	2 cut(s)	201, 404
MspR9I	CCNGG	4 cut(s)	283, 404, 652, 969
MvaI	CCWGG	3 cut(s)	283, 652, 969
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	404
NdeII	GATC	3 cut(s)	55, 175, 228
NlaIII	CATG	1 cut(s)	744
NlaIV	GGNNCC	2 cut(s)	230, 895
NmuCI	GTSAC	2 cut(s)	298, 983
NspI	RCATGY	1 cut(s)	744
NspV	TTCGAA	1 cut(s)	904
PaeR7I	CTCGAG	1 cut(s)	6
PasI	CCCWGGG	2 cut(s)	651, 968
PceI	AGGCCT	2 cut(s)	210, 428
PciI	ACATGT	1 cut(s)	740
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PdmI	GAANNNNTTC	2 cut(s)	164, 768
PfeI	GAWTC	2 cut(s)	500, 565
PflMI	CCANNNNNTGG	1 cut(s)	524
PkrI	GCNGC	1 cut(s)	13
PscI	ACATGT	1 cut(s)	740
Psp6I	CCWGG	3 cut(s)	281, 650, 967
PspEI	GGTNACC	1 cut(s)	469
PspGI	CCWGG	3 cut(s)	281, 650, 967
PspN4I	GGNNCC	2 cut(s)	230, 895
PspPI	GGNCC	2 cut(s)	631, 1030
PspXI	VCTCGAGB	1 cut(s)	6
PsuI	RGATCY	2 cut(s)	175, 228
RsaI	GTAC	2 cut(s)	710, 926
RsaNI	GTAC	2 cut(s)	709, 925
SacII	CCGCGG	1 cut(s)	15
SaqAI	TTAA	5 cut(s)	245, 365, 390, 546, 606
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	3 cut(s)	55, 175, 228
Sau96I	GGNCC	2 cut(s)	631, 1030
ScrFI	CCNGG	4 cut(s)	283, 404, 652, 969
SfaNI	GCATC	3 cut(s)	160, 715, 817
SfcI	CTRYAG	1 cut(s)	810
Sfr274I	CTCGAG	1 cut(s)	6
Sfr303I	CCGCGG	1 cut(s)	15
SfuI	TTCGAA	1 cut(s)	904
SgrBI	CCGCGG	1 cut(s)	15
SinI	GGWCC	1 cut(s)	1030
SlaI	CTCGAG	1 cut(s)	6
SmlI	CTYRAG	5 cut(s)	6, 134, 212, 578, 1061
SmoI	CTYRAG	5 cut(s)	6, 134, 212, 578, 1061
Sse9I	AATT	5 cut(s)	572, 730, 783, 789, 839
SseBI	AGGCCT	2 cut(s)	210, 428
SsiI	CCGC	3 cut(s)	12, 14, 1038
SspMI	CTAG	1 cut(s)	878
StuI	AGGCCT	2 cut(s)	210, 428
StyD4I	CCNGG	4 cut(s)	281, 402, 650, 967
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	7 cut(s)	7, 35, 54, 168, 503, 904, 978
TasI	AATT	5 cut(s)	572, 730, 783, 789, 839
TatI	WGTACW	1 cut(s)	708
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	2 cut(s)	500, 565
Tru1I	TTAA	5 cut(s)	245, 365, 390, 546, 606
Tru9I	TTAA	5 cut(s)	245, 365, 390, 546, 606
TscAI	CASTG	2 cut(s)	759, 992
TseFI	GTSAC	2 cut(s)	298, 983
Tsp45I	GTSAC	2 cut(s)	298, 983
TspDTI	ATGAA	1 cut(s)	513
TspGWI	ACGGA	2 cut(s)	699, 1023
TspRI	CASTG	2 cut(s)	759, 992
Van91I	CCANNNNNTGG	1 cut(s)	524
VpaK11BI	GGWCC	1 cut(s)	1030
XagI	CCTNNNNNAGG	1 cut(s)	1071
XapI	RAATTY	3 cut(s)	572, 730, 783
XceI	RCATGY	1 cut(s)	744
XcmI	CCANNNNNNNNNTGG	1 cut(s)	838
XhoI	CTCGAG	1 cut(s)	6
XmnI	GAANNNNTTC	2 cut(s)	164, 768
XspI	CTAG	1 cut(s)	878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.