FvH4_1g22990

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
14879091 .. 14881126
2036 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g22990.t1

Sequence Viewer

Length: 1440 bp
ATGGCTAGAGCCGCGGTTCTTGTGTGGCTCTTGTCGATGATGTTAGTCTCCATCGACATTGCACAAGGCTACGGTATTAACTGGGGTTCAATGATGACACACCCTTTGCCTCCCAAAAAAGTTGTTGCAATGCTTAAGGAAAATGGCTTCAAGAAAGTGAAGCTTTTCGATGCAGAGCCATCGATGATGGACGCGTTGGCCGGTTCAGGCCTAGAGGTTATGGTCGGAATCCCCAATGATAAGTTGTCAGAACTTGCTAGTGATTATGGAAGTGCCAAAGCCTGGGTGAAGCACAATGTGACCAGCTATTTGTATGACGGGGGCGTCGCTATCAAATATGTGGCTGTTGGAAACGAGCCATTCTTGTCAAGTTACAATGGGAGTTATGTTAAGACTACTTATCCGGCTATGAAAAACATTCAGAAGGCCTTGTATGATAGTAGCCAGGAAGTTGGATCGAAAATCAAAGTCACCACTCCCTTCAATGCGGATGTGTATCATTCGAAATCAGACAAGCCAACGGATGGTGAATTCCGACAGAACATTAGGGATAGTATGGTGCAGATTCTAGGACTCCTGAAGCAAGCCAAGTCTCCATTTCTTGTCAACATATACCCCTTCCTTAGTTTGTCCCAAAACACTGATTTTCCTAGGGAATTTGCTTTCTTTGATGGTGGTGGAAAGGGGGTTGATGATGGCAACATCCACTACGACAATGTGTTTGATGCAAATCTGGATACAGCTCACTATGCATTGAAAAAGGAAGGTTATTCGGACTTGGAGATTATAATCGGAGAAGTCGGATGGCCTACAGATGGTGGCAGGGATGCCAACGTCAAATTGGCACAGAAGTTTTATGACGGCCTCTTCAAGAAGCTAGCAAAAGGGCAAGGAAGCCCTCTTCGAAAAGGAAGCGTAGAAGTGTACCTCTTCGGTCTTTTTGATGAGAACTCCAAAAGTATTGCCCCCGGGGACTTTGAGCGTCATTGGGGCATCTTTCGTTACGACGGACAGCCTAAGTTTCCGATGGACATCAGCGGAAAGGGGCAAAACCAAATGCTCAAGCCAGTGAAAGGGGTGGAAATGCTGGACAAACAATGGTGTGTACTAAACAGTGATGTGAGAAACTTGAGTAAGGCAATGAAAGAAAAGGACTATGCTTGCAGTAATGCGGATTGCACAAGCATTAAAAATAGTAGCTCATGCAGTTTTCTTGAACCCAGTGACCAAGTCTCTTACGCTTTCAACTCATTCTACCAATCGAGGAACCAAAGCGTGGAGGCGTGTAATTTTAATGGGATGGGAACAAAGGTAACACAAGATCCTTCAAAAGGAGATTGTTTATTTCCGTTACAGATAGAAAGTAGTGCTACAGATTTGGTTGCATTGAGTCTTTCTACAGGACTCTTGTTGCTCATGAGCTTCTTCATATTAATGTAA

Protein Analysis

480

Amino Acids

52.87

Weight (kDa)

6.13

Isoelectric Point (pI)

36.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 25 - 344 5.1e-65 Glycosyl hydrolases family 17
X8 PF07983 366 - 436 7e-14 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 788
AasI GACNNNNNNGTC 1 cut(s) 323
AccB7I CCANNNNNTGG 3 cut(s) 282, 524, 1276
AccII CGCG 2 cut(s) 14, 194
AciI CCGC 5 cut(s) 12, 14, 488, 1038, 1172
AclWI GGATC 2 cut(s) 463, 1316
AcoI YGGCCR 1 cut(s) 198
AcsI RAATTY 2 cut(s) 530, 656
AcuI CTGAAG 1 cut(s) 599
AcyI GRCGYC 1 cut(s) 324
AdeI CACNNNGTG 1 cut(s) 298
AfaI GTAC 2 cut(s) 926, 1107
AfiI CCNNNNNNNGG 6 cut(s) 282, 524, 815, 1073, 1276, 1331
AflII CTTAAG 1 cut(s) 134
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 8 cut(s) 90, 151, 484, 757, 871, 1217, 1246, 1329
AjnI CCWGG 2 cut(s) 281, 444
AluBI AGCT 6 cut(s) 163, 306, 743, 877, 1200, 1422
AluI AGCT 6 cut(s) 163, 306, 743, 877, 1200, 1422
Alw26I GTCTC 3 cut(s) 52, 597, 1237
AlwI GGATC 2 cut(s) 463, 1316
Ama87I CYCGRG 1 cut(s) 968
AoxI GGCC 5 cut(s) 198, 208, 426, 806, 862
ApoI RAATTY 2 cut(s) 530, 656
ArsI GACNNNNNNTTYG 6 cut(s) 88, 120, 292, 324, 704, 736
AseI ATTAAT 1 cut(s) 1433
Asp700I GAANNNNTTC 1 cut(s) 164
AspA2I CCTAGG 1 cut(s) 650
AsuC2I CCSGG 2 cut(s) 969, 970
AsuHPI GGTGA 3 cut(s) 298, 463, 539
AsuII TTCGAA 2 cut(s) 503, 904
AsuNHI GCTAGC 1 cut(s) 877
AvaI CYCGRG 1 cut(s) 968
AvrII CCTAGG 1 cut(s) 650
BceAI ACGGC 1 cut(s) 877
BcgI CGANNNNNNTGC 2 cut(s) 162, 196
BciT130I CCWGG 2 cut(s) 283, 446
BciVI GTATCC 1 cut(s) 730
BcnI CCSGG 2 cut(s) 969, 970
BcoDI GTCTC 3 cut(s) 52, 597, 1237
BfaI CTAG 6 cut(s) 6, 212, 258, 569, 651, 878
BfmI CTRYAG 3 cut(s) 810, 1371, 1398
BfrI CTTAAG 1 cut(s) 134
BfuI GTATCC 1 cut(s) 730
BisI GCNGC 1 cut(s) 12
BlnI CCTAGG 1 cut(s) 650
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 4 cut(s) 283, 446, 969, 970
BmeT110I CYCGRG 1 cut(s) 968
BmiI GGNNCC 1 cut(s) 1268
BmrFI CCNGG 4 cut(s) 283, 446, 969, 970
BmrI ACTGGG 2 cut(s) 91, 1215
BmsI GCATC 4 cut(s) 160, 715, 817, 1002
BmtI GCTAGC 1 cut(s) 881
BmuI ACTGGG 2 cut(s) 91, 1215
Bpu14I TTCGAA 2 cut(s) 503, 904
BpuEI CTTGAG 2 cut(s) 1046, 1150
BpuMI CCSGG 2 cut(s) 969, 970
Bsa29I ATCGAT 1 cut(s) 182
BsaBI GATNNNNATC 4 cut(s) 495, 729, 788, 1031
BsaHI GRCGYC 1 cut(s) 324
BsaJI CCNNGG 6 cut(s) 12, 282, 650, 967, 968, 969
Bsc4I CCNNNNNNNGG 6 cut(s) 282, 524, 815, 1073, 1276, 1331
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 3 cut(s) 86, 1067, 1221
Bse3DI GCAATG 3 cut(s) 57, 135, 1146
Bse8I GATNNNNATC 4 cut(s) 495, 729, 788, 1031
BseBI CCWGG 2 cut(s) 283, 446
BseCI ATCGAT 1 cut(s) 182
BseDI CCNNGG 6 cut(s) 12, 282, 650, 967, 968, 969
BseGI GGATG 6 cut(s) 496, 529, 702, 809, 832, 1305
BseJI GATNNNNATC 4 cut(s) 495, 729, 788, 1031
BseLI CCNNNNNNNGG 6 cut(s) 282, 524, 815, 1073, 1276, 1331
BseMI GCAATG 3 cut(s) 57, 135, 1146
BseNI ACTGG 3 cut(s) 86, 1067, 1221
BsgI GTGCAG 1 cut(s) 581
Bsh1236I CGCG 2 cut(s) 14, 194
BshFI GGCC 5 cut(s) 200, 210, 428, 808, 864
BshVI ATCGAT 1 cut(s) 182
BsiHKCI CYCGRG 1 cut(s) 968
BsiSI CCGG 3 cut(s) 201, 404, 969
BslFI GGGAC 2 cut(s) 616, 986
BslI CCNNNNNNNGG 6 cut(s) 282, 524, 815, 1073, 1276, 1331
BsmAI GTCTC 3 cut(s) 52, 597, 1237
BsmFI GGGAC 2 cut(s) 616, 986
BsnI GGCC 5 cut(s) 200, 210, 428, 808, 864
BsoBI CYCGRG 1 cut(s) 968
Bsp119I TTCGAA 2 cut(s) 503, 904
Bsp143I GATC 2 cut(s) 455, 1321
BspACI CCGC 5 cut(s) 12, 14, 488, 1038, 1172
BspANI GGCC 5 cut(s) 200, 210, 428, 808, 864
BspDI ATCGAT 1 cut(s) 182
BspFNI CGCG 2 cut(s) 14, 194
BspHI TCATGA 1 cut(s) 1416
BspLI GGNNCC 1 cut(s) 1268
BspOI GCTAGC 1 cut(s) 881
BspPI GGATC 2 cut(s) 463, 1316
BspT104I TTCGAA 2 cut(s) 503, 904
BspTI CTTAAG 1 cut(s) 134
BsrDI GCAATG 3 cut(s) 57, 135, 1146
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 3 cut(s) 86, 1067, 1221
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 6 cut(s) 12, 282, 650, 967, 968, 969
BssMI GATC 2 cut(s) 455, 1321
BssNI GRCGYC 1 cut(s) 324
BssT1I CCWWGG 1 cut(s) 650
Bst2UI CCWGG 2 cut(s) 283, 446
Bst4CI ACNGT 2 cut(s) 74, 1115
Bst6I CTCTTC 3 cut(s) 872, 906, 935
BstACI GRCGYC 1 cut(s) 324
BstAFI CTTAAG 1 cut(s) 134
BstBI TTCGAA 2 cut(s) 503, 904
BstC8I GCNNGC 3 cut(s) 585, 879, 1162
BstDEI CTNAG 2 cut(s) 623, 1017
BstDSI CCRYGG 1 cut(s) 12
BstENI CCTNNNNNAGG 1 cut(s) 1329
BstF5I GGATG 6 cut(s) 496, 529, 702, 809, 832, 1305
BstFNI CGCG 2 cut(s) 14, 194
BstKTI GATC 2 cut(s) 458, 1324
BstMAI GTCTC 3 cut(s) 52, 597, 1237
BstMBI GATC 2 cut(s) 455, 1321
BstMWI GCNNNNNNNGC 2 cut(s) 11, 749
BstNI CCWGG 2 cut(s) 283, 446
BstSCI CCNGG 4 cut(s) 281, 444, 967, 968
BstSFI CTRYAG 3 cut(s) 810, 1371, 1398
BstUI CGCG 2 cut(s) 14, 194
BstX2I RGATCY 1 cut(s) 1321
BstXI CCANNNNNNTGG 1 cut(s) 452
BstYI RGATCY 1 cut(s) 1321
Bsu15I ATCGAT 1 cut(s) 182
BsuI GTATCC 1 cut(s) 730
BsuRI GGCC 5 cut(s) 200, 210, 428, 808, 864
BsuTUI ATCGAT 1 cut(s) 182
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 6 cut(s) 496, 529, 702, 809, 832, 1305
BtsIMutI CAGTG 4 cut(s) 639, 1074, 1120, 1228
Cac8I GCNNGC 3 cut(s) 585, 879, 1162
CciI TCATGA 1 cut(s) 1416
Cfr10I RCCGGY 1 cut(s) 200
Cfr42I CCGCGG 1 cut(s) 15
Cfr9I CCCGGG 1 cut(s) 968
ClaI ATCGAT 1 cut(s) 182
CseI GACGC 3 cut(s) 200, 313, 971
Csp6I GTAC 2 cut(s) 925, 1106
CviAII CATG 2 cut(s) 1203, 1417
CviQI GTAC 2 cut(s) 925, 1106
DdeI CTNAG 2 cut(s) 623, 1017
DpnI GATC 2 cut(s) 457, 1323
DpnII GATC 2 cut(s) 455, 1321
DraIII CACNNNGTG 1 cut(s) 298
DrdI GACNNNNNNGTC 1 cut(s) 323
DseDI GACNNNNNNGTC 1 cut(s) 323
EaeI YGGCCR 1 cut(s) 198
Eam1104I CTCTTC 3 cut(s) 872, 906, 935
EarI CTCTTC 3 cut(s) 872, 906, 935
Eco130I CCWWGG 1 cut(s) 650
Eco147I AGGCCT 2 cut(s) 210, 428
Eco57I CTGAAG 1 cut(s) 599
Eco88I CYCGRG 1 cut(s) 968
EcoNI CCTNNNNNAGG 1 cut(s) 1329
EcoRI GAATTC 1 cut(s) 530
EcoRII CCWGG 2 cut(s) 281, 444
EcoT14I CCWWGG 1 cut(s) 650
EcoT22I ATGCAT 1 cut(s) 754
ErhI CCWWGG 1 cut(s) 650
FaeI CATG 2 cut(s) 1206, 1420
FalI AAGNNNNNCTT 2 cut(s) 147, 179
FaqI GGGAC 2 cut(s) 616, 986
FatI CATG 2 cut(s) 1202, 1416
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 6 cut(s) 503, 536, 689, 816, 839, 1312
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 6 cut(s) 6, 212, 258, 569, 651, 878
GluI GCNGC 1 cut(s) 12
HaeIII GGCC 5 cut(s) 200, 210, 428, 808, 864
HapII CCGG 3 cut(s) 201, 404, 969
HgaI GACGC 3 cut(s) 200, 313, 971
Hin1I GRCGYC 1 cut(s) 324
Hin1II CATG 2 cut(s) 1206, 1420
HincII GTYRAC 1 cut(s) 607
HindII GTYRAC 1 cut(s) 607
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 5 cut(s) 228, 565, 573, 1390, 1404
HpaII CCGG 3 cut(s) 201, 404, 969
HphI GGTGA 3 cut(s) 298, 463, 539
Hpy166II GTNNAC 3 cut(s) 607, 925, 1106
Hpy188I TCNGA 9 cut(s) 227, 250, 423, 511, 536, 775, 794, 803, 1026
Hpy188III TCNNGA 6 cut(s) 151, 577, 734, 871, 1214, 1417
Hpy8I GTNNAC 3 cut(s) 607, 925, 1106
Hpy99I CGWCG 2 cut(s) 329, 1010
HpyAV CCTTC 5 cut(s) 418, 490, 628, 758, 1335
HpyCH4III ACNGT 2 cut(s) 74, 1115
HpyCH4IV ACGT 1 cut(s) 834
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 749
HpyF3I CTNAG 2 cut(s) 623, 1017
HpySE526I ACGT 1 cut(s) 834
Hsp92I GRCGYC 1 cut(s) 324
Hsp92II CATG 2 cut(s) 1206, 1420
KspI CCGCGG 1 cut(s) 15
Kzo9I GATC 2 cut(s) 455, 1321
LweI GCATC 4 cut(s) 160, 715, 817, 1002
MaeI CTAG 6 cut(s) 6, 212, 258, 569, 651, 878
MaeII ACGT 1 cut(s) 834
MaeIII GTNAC 7 cut(s) 298, 371, 469, 1001, 1223, 1312, 1350
MalI GATC 2 cut(s) 457, 1323
MboI GATC 2 cut(s) 455, 1321
MboII GAAGA 4 cut(s) 859, 893, 922, 1417
MflI RGATCY 1 cut(s) 1321
MluCI AATT 4 cut(s) 530, 656, 839, 1288
MluI ACGCGT 1 cut(s) 192
MlyI GAGTC 3 cut(s) 567, 1398, 1399
MmeI TCCRAC 5 cut(s) 205, 328, 433, 559, 781
MnlI CCTC 7 cut(s) 120, 208, 875, 909, 938, 1257, 1273
Mph1103I ATGCAT 1 cut(s) 754
MroXI GAANNNNTTC 1 cut(s) 164
MseI TTAA 6 cut(s) 78, 135, 390, 1188, 1293, 1433
MslI CAYNNNNRTG 1 cut(s) 1433
MspA1I CMGCKG 2 cut(s) 14, 1038
MspCI CTTAAG 1 cut(s) 134
MspI CCGG 3 cut(s) 201, 404, 969
MspR9I CCNGG 4 cut(s) 283, 446, 969, 970
MvaI CCWGG 2 cut(s) 283, 446
MvnI CGCG 2 cut(s) 14, 194
MwoI GCNNNNNNNGC 2 cut(s) 11, 749
NciI CCSGG 2 cut(s) 969, 970
NdeII GATC 2 cut(s) 455, 1321
NheI GCTAGC 1 cut(s) 877
NlaIII CATG 2 cut(s) 1206, 1420
NlaIV GGNNCC 1 cut(s) 1268
NmuCI GTSAC 3 cut(s) 298, 469, 1223
NsiI ATGCAT 1 cut(s) 754
NspV TTCGAA 2 cut(s) 503, 904
PagI TCATGA 1 cut(s) 1416
PceI AGGCCT 2 cut(s) 210, 428
PdmI GAANNNNTTC 1 cut(s) 164
PfeI GAWTC 2 cut(s) 228, 565
PflFI GACNNNGTC 1 cut(s) 1229
PflMI CCANNNNNTGG 3 cut(s) 282, 524, 1276
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 3 cut(s) 567, 1398, 1398
PpsI GAGTC 3 cut(s) 567, 1398, 1398
PshBI ATTAAT 1 cut(s) 1433
PsiI TTATAA 1 cut(s) 788
Psp6I CCWGG 2 cut(s) 281, 444
PspGI CCWGG 2 cut(s) 281, 444
PspN4I GGNNCC 1 cut(s) 1268
PsuI RGATCY 1 cut(s) 1321
PsyI GACNNNGTC 1 cut(s) 1229
RsaI GTAC 2 cut(s) 926, 1107
RsaNI GTAC 2 cut(s) 925, 1106
RseI CAYNNNNRTG 1 cut(s) 1433
SacII CCGCGG 1 cut(s) 15
SaqAI TTAA 6 cut(s) 78, 135, 390, 1188, 1293, 1433
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 2 cut(s) 455, 1321
SchI GAGTC 3 cut(s) 567, 1398, 1399
ScrFI CCNGG 4 cut(s) 283, 446, 969, 970
SfaNI GCATC 4 cut(s) 160, 715, 817, 1002
SfcI CTRYAG 3 cut(s) 810, 1371, 1398
Sfr303I CCGCGG 1 cut(s) 15
SfuI TTCGAA 2 cut(s) 503, 904
SgrBI CCGCGG 1 cut(s) 15
SmaI CCCGGG 1 cut(s) 970
SmiMI CAYNNNNRTG 1 cut(s) 1433
SmlI CTYRAG 3 cut(s) 134, 1061, 1129
SmoI CTYRAG 3 cut(s) 134, 1061, 1129
Sse9I AATT 4 cut(s) 530, 656, 839, 1288
SseBI AGGCCT 2 cut(s) 210, 428
SsiI CCGC 5 cut(s) 12, 14, 488, 1038, 1172
SspMI CTAG 6 cut(s) 6, 212, 258, 569, 651, 878
StuI AGGCCT 2 cut(s) 210, 428
StyD4I CCNGG 4 cut(s) 281, 444, 967, 968
StyI CCWWGG 1 cut(s) 650
TaaI ACNGT 2 cut(s) 74, 1115
TaiI ACGT 1 cut(s) 837
TaqI TCGA 8 cut(s) 35, 54, 168, 182, 458, 503, 904, 1262
TaqII GACCGA 1 cut(s) 923
TasI AATT 4 cut(s) 530, 656, 839, 1288
TatI WGTACW 1 cut(s) 1105
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 2 cut(s) 228, 565
Tru1I TTAA 6 cut(s) 78, 135, 390, 1188, 1293, 1433
Tru9I TTAA 6 cut(s) 78, 135, 390, 1188, 1293, 1433
TscAI CASTG 4 cut(s) 646, 1074, 1120, 1228
TseFI GTSAC 3 cut(s) 298, 469, 1223
Tsp45I GTSAC 3 cut(s) 298, 469, 1223
TspDTI ATGAA 3 cut(s) 425, 1157, 1417
TspGWI ACGGA 3 cut(s) 536, 1023, 1338
TspMI CCCGGG 1 cut(s) 968
TspRI CASTG 4 cut(s) 646, 1074, 1120, 1228
Tth111I GACNNNGTC 1 cut(s) 1229
Van91I CCANNNNNTGG 3 cut(s) 282, 524, 1276
Vha464I CTTAAG 1 cut(s) 134
VspI ATTAAT 1 cut(s) 1433
XagI CCTNNNNNAGG 1 cut(s) 1329
XapI RAATTY 2 cut(s) 530, 656
XcmI CCANNNNNNNNNTGG 1 cut(s) 838
XmaI CCCGGG 1 cut(s) 968
XmaJI CCTAGG 1 cut(s) 650
XmnI GAANNNNTTC 1 cut(s) 164
XspI CTAG 6 cut(s) 6, 212, 258, 569, 651, 878
Zsp2I ATGCAT 1 cut(s) 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.