FvH4_1g22980

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
14875907 .. 14878664
2758 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g22980.t1

Sequence Viewer

Length: 1374 bp
ATGGTTCGAGTCTTACTTCTTTTAACATATGTTGTTTCCCTGATGTTGGTGAACTTGACCGATGAGGCTCAAGGTTTAGGTGTCAACTGGGGAGGAATGGCGTCGCACCCTTTGGATCCCAACAATGTTGTAAAGATGCTCAAGGACAATGGGATCAAGAAAGTGAAGCTTTTCGACGCAGAGCCTTCCACCATGAAAGCCTTGTCCGGGTCAGGTTTTTCAGTCATCGTTGGAATTCCGAACGATAAGTTGGCATCAATTTCTTCAGATTACAAACATGCCCAAGAATGGGTTAAAGAAAATATCACCAAATATGATCATAATGGGGGCGTCGATATCAGCTATGTCGCTGTTGGAAACGAGCCATTCTTAACAAGTTATAATGGGAGTTTTCTTAAGACTACTTTTCCAGCATTGCAAAACATTCAAAAGGCCCTGGATGCAGCTGGCACTAGACAAAAAATCAAAGCCATAGTGCCTTTCAATGCTGATGTTTATGAAGCTTCTTCGGGCAAACCATCGGACGGTTCTTTCCGGAAGGACATTAGGGTTGAGATGCTCAAGATACTAGGTTTGCTCAAGAACAATAAGTCTCCATTTTTCGTTAACATATATCCCTTCATTAGTCTCCAGCAAAGTTCTACTTTCCCCAGAGAATTTGCATTCTTTGATGGTACTAGCCAACCTGTCCAAGACAATAACAACCAATATACCAATGTGTTTGATGCAAATTTGGACACACTTGTTTGTGCACTTAAGAAGGTTGGTTACCAGGACTTGGACATAGTTATCGGAGAAGCCGGATGGCCTACAGATGGTGACAAGAATGCCAATCCAACTTTGGCCAAGAAGTTCTACGATGGACTTATGAAGAAACTCGCAAAGGCCGAGGGAACCCCTCTTCAAAAAGGGTACTTGGAAGTGTACCTTTTCGGCCTCACTGACGAGGACCAAAAAAGTGTTGCCCCGGGGGACTTTGAGCGCCACTGGGGCATTTTTAGCTATGATGGAAAGCCTAAGTTTGCAATGGACCTCACCGGAAAAGGGAACGATCAAATGCTTAAAGGGGTACAAGGAGTTCAGTACATGGACAAGCAATGGTGTGTTGTGAACAGTGATGTTAAAAATGGGACTCTTTTAAAAACCGACCTCAATTACGCTTGTTCTCAGGCAGATTGCACATCTTTGGGAAGTGGAAGGTCATGTGATTTGGATATGCAAGGGAAAGTCTCATATGCTTATAATTCTCTCTTCCAAAGTAAAGACCAAGATGTTCGGACCTGCAATTTTAATGGCAAGGGAACGATTACAAAAACCGATCCTTCTAAAGAACTTGTGTATTCAATATACAAATTTACAGTAGTGCTGGAGTGA

Protein Analysis

458

Amino Acids

50.46

Weight (kDa)

6.47

Isoelectric Point (pI)

27.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 26 - 344 1.4e-66 Glycosyl hydrolases family 17
X8 PF07983 366 - 435 4.2e-13 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 381, 1242
Acc36I ACCTGC 1 cut(s) 1289
AccB7I CCANNNNNTGG 1 cut(s) 778
AccIII TCCGGA 1 cut(s) 534
AclWI GGATC 4 cut(s) 110, 123, 161, 1313
AcoI YGGCCR 1 cut(s) 843
AcsI RAATTY 4 cut(s) 234, 656, 730, 1352
AcuI CTGAAG 1 cut(s) 249
AcyI GRCGYC 2 cut(s) 101, 330
AfaI GTAC 5 cut(s) 676, 914, 926, 1071, 1085
AfiI CCNNNNNNNGG 8 cut(s) 46, 207, 288, 289, 524, 778, 815, 1044
AflII CTTAAG 2 cut(s) 395, 755
AgsI TTSAA 4 cut(s) 428, 484, 905, 1344
AjnI CCWGG 2 cut(s) 435, 771
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AluBI AGCT 5 cut(s) 169, 342, 446, 503, 1002
AluI AGCT 5 cut(s) 169, 342, 446, 503, 1002
Alw21I GWGCWC 1 cut(s) 754
Alw26I GTCTC 3 cut(s) 597, 632, 1234
Alw44I GTGCAC 1 cut(s) 750
AlwI GGATC 4 cut(s) 110, 123, 161, 1313
Ama87I CYCGRG 1 cut(s) 967
Aor13HI TCCGGA 1 cut(s) 534
AoxI GGCC 5 cut(s) 432, 806, 843, 885, 934
ApaLI GTGCAC 1 cut(s) 750
ApeKI GCWGC 1 cut(s) 443
ApoI RAATTY 4 cut(s) 234, 656, 730, 1352
Asp700I GAANNNNTTC 1 cut(s) 170
AspLEI GCGC 1 cut(s) 984
AspS9I GGNCC 4 cut(s) 433, 949, 1030, 1278
AsuC2I CCSGG 3 cut(s) 208, 968, 969
AsuHPI GGTGA 4 cut(s) 61, 298, 830, 1027
AvaI CYCGRG 1 cut(s) 967
AvaII GGWCC 3 cut(s) 949, 1030, 1278
BaeGI GKGCMC 1 cut(s) 754
BalI TGGCCA 1 cut(s) 845
BamHI GGATCC 1 cut(s) 115
BarI GAAGNNNNNNTAC 2 cut(s) 752, 784
Bbv12I GWGCWC 1 cut(s) 754
BbvI GCAGC 1 cut(s) 455
BccI CCATC 6 cut(s) 526, 665, 798, 809, 854, 1001
BciT130I CCWGG 2 cut(s) 437, 773
BclI TGATCA 1 cut(s) 316
BcnI CCSGG 3 cut(s) 208, 968, 969
BcoDI GTCTC 3 cut(s) 597, 632, 1234
BfaI CTAG 3 cut(s) 453, 569, 678
BfmI CTRYAG 1 cut(s) 810
BfoI RGCGCY 1 cut(s) 985
BfrI CTTAAG 2 cut(s) 395, 755
BfuAI ACCTGC 1 cut(s) 1289
BglI GCCNNNNNGGC 1 cut(s) 990
BisI GCNGC 1 cut(s) 444
BlsI GCNGC 1 cut(s) 445
Bme1390I CCNGG 5 cut(s) 208, 437, 773, 968, 969
Bme18I GGWCC 3 cut(s) 949, 1030, 1278
BmeT110I CYCGRG 1 cut(s) 967
BmgT120I GGNCC 4 cut(s) 433, 949, 1030, 1278
BmiI GGNNCC 2 cut(s) 117, 895
BmrFI CCNGG 5 cut(s) 208, 437, 773, 968, 969
BmrI ACTGGG 2 cut(s) 97, 997
BmsI GCATC 5 cut(s) 126, 263, 430, 546, 715
BmuI ACTGGG 2 cut(s) 97, 997
BpmI CTGGAG 1 cut(s) 614
BpuEI CTTGAG 4 cut(s) 54, 125, 545, 563
BpuMI CCSGG 3 cut(s) 208, 968, 969
BsaHI GRCGYC 2 cut(s) 101, 330
BsaJI CCNNGG 5 cut(s) 435, 888, 966, 967, 968
BsaWI WCCGGW 2 cut(s) 534, 1037
Bsc4I CCNNNNNNNGG 8 cut(s) 46, 207, 288, 289, 524, 778, 815, 1044
Bse1I ACTGG 2 cut(s) 92, 992
Bse3DI GCAATG 3 cut(s) 413, 1032, 1103
BseAI TCCGGA 1 cut(s) 534
BseBI CCWGG 2 cut(s) 437, 773
BseDI CCNNGG 5 cut(s) 435, 888, 966, 967, 968
BseGI GGATG 2 cut(s) 445, 809
BseLI CCNNNNNNNGG 8 cut(s) 46, 207, 288, 289, 524, 778, 815, 1044
BseMI GCAATG 3 cut(s) 413, 1032, 1103
BseMII CTCAG 1 cut(s) 1181
BseNI ACTGG 2 cut(s) 92, 992
BseSI GKGCMC 1 cut(s) 754
BseXI GCAGC 1 cut(s) 455
BshFI GGCC 5 cut(s) 434, 808, 845, 887, 936
BsiHKAI GWGCWC 1 cut(s) 754
BsiHKCI CYCGRG 1 cut(s) 967
BsiSI CCGG 5 cut(s) 207, 535, 801, 968, 1038
BslFI GGGAC 2 cut(s) 986, 1144
BslI CCNNNNNNNGG 8 cut(s) 46, 207, 288, 289, 524, 778, 815, 1044
BsmAI GTCTC 3 cut(s) 597, 632, 1234
BsmFI GGGAC 2 cut(s) 986, 1144
BsmI GAATGC 2 cut(s) 662, 832
BsnI GGCC 5 cut(s) 434, 808, 845, 887, 936
BsoBI CYCGRG 1 cut(s) 967
Bsp1286I GDGCHC 1 cut(s) 754
Bsp13I TCCGGA 1 cut(s) 534
Bsp143I GATC 5 cut(s) 115, 153, 316, 1051, 1318
BspANI GGCC 5 cut(s) 434, 808, 845, 887, 936
BspCNI CTCAG 1 cut(s) 1180
BspEI TCCGGA 1 cut(s) 534
BspLI GGNNCC 2 cut(s) 117, 895
BspMI ACCTGC 1 cut(s) 1289
BspPI GGATC 4 cut(s) 110, 123, 161, 1313
BspTI CTTAAG 2 cut(s) 395, 755
BsrDI GCAATG 3 cut(s) 413, 1032, 1103
BsrI ACTGG 2 cut(s) 92, 992
BssECI CCNNGG 5 cut(s) 435, 888, 966, 967, 968
BssMI GATC 5 cut(s) 115, 153, 316, 1051, 1318
BssNI GRCGYC 2 cut(s) 101, 330
Bst2UI CCWGG 2 cut(s) 437, 773
Bst4CI ACNGT 3 cut(s) 527, 1115, 1360
Bst6I CTCTTC 2 cut(s) 906, 1256
BstACI GRCGYC 2 cut(s) 101, 330
BstAFI CTTAAG 2 cut(s) 395, 755
BstC8I GCNNGC 1 cut(s) 448
BstDEI CTNAG 2 cut(s) 1017, 1167
BstEII GGTNACC 1 cut(s) 767
BstF5I GGATG 2 cut(s) 445, 809
BstH2I RGCGCY 1 cut(s) 985
BstHHI GCGC 1 cut(s) 984
BstKTI GATC 5 cut(s) 118, 156, 319, 1054, 1321
BstMAI GTCTC 3 cut(s) 597, 632, 1234
BstMBI GATC 5 cut(s) 115, 153, 316, 1051, 1318
BstMWI GCNNNNNNNGC 3 cut(s) 440, 990, 999
BstNI CCWGG 2 cut(s) 437, 773
BstNSI RCATGY 1 cut(s) 281
BstPI GGTNACC 1 cut(s) 767
BstSCI CCNGG 5 cut(s) 206, 435, 771, 966, 967
BstSFI CTRYAG 1 cut(s) 810
BstSLI GKGCMC 1 cut(s) 754
BstV1I GCAGC 1 cut(s) 455
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BsuRI GGCC 5 cut(s) 434, 808, 845, 887, 936
BtsCI GGATG 2 cut(s) 445, 809
BtsIMutI CAGTG 3 cut(s) 939, 985, 1120
BveI ACCTGC 1 cut(s) 1289
Cac8I GCNNGC 1 cut(s) 448
CfoI GCGC 1 cut(s) 984
Cfr13I GGNCC 4 cut(s) 433, 949, 1030, 1278
Cfr9I CCCGGG 1 cut(s) 967
CseI GACGC 3 cut(s) 90, 185, 319
Csp6I GTAC 5 cut(s) 675, 913, 925, 1070, 1084
CviAII CATG 4 cut(s) 193, 278, 1087, 1203
CviQI GTAC 5 cut(s) 675, 913, 925, 1070, 1084
DdeI CTNAG 2 cut(s) 1017, 1167
DpnI GATC 5 cut(s) 117, 155, 318, 1053, 1320
DpnII GATC 5 cut(s) 115, 153, 316, 1051, 1318
DraI TTTAAA 1 cut(s) 1140
EaeI YGGCCR 1 cut(s) 843
Eam1104I CTCTTC 2 cut(s) 906, 1256
EarI CTCTTC 2 cut(s) 906, 1256
Eco32I GATATC 1 cut(s) 337
Eco47I GGWCC 3 cut(s) 949, 1030, 1278
Eco57I CTGAAG 1 cut(s) 249
Eco88I CYCGRG 1 cut(s) 967
Eco91I GGTNACC 1 cut(s) 767
EcoO109I RGGNCCY 1 cut(s) 433
EcoO65I GGTNACC 1 cut(s) 767
EcoRI GAATTC 1 cut(s) 234
EcoRII CCWGG 2 cut(s) 435, 771
EcoRV GATATC 1 cut(s) 337
FaeI CATG 4 cut(s) 196, 281, 1090, 1206
FalI AAGNNNNNCTT 6 cut(s) 153, 185, 628, 660, 912, 944
FaqI GGGAC 2 cut(s) 986, 1144
FatI CATG 4 cut(s) 192, 277, 1086, 1202
FauNDI CATATG 2 cut(s) 28, 1234
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 1 cut(s) 444
FokI GGATG 2 cut(s) 452, 816
Fsp4HI GCNGC 1 cut(s) 444
FspBI CTAG 3 cut(s) 453, 569, 678
GlaI GCGC 1 cut(s) 983
GluI GCNGC 1 cut(s) 444
GsuI CTGGAG 1 cut(s) 614
HaeII RGCGCY 1 cut(s) 985
HaeIII GGCC 5 cut(s) 434, 808, 845, 887, 936
HapII CCGG 5 cut(s) 207, 535, 801, 968, 1038
HgaI GACGC 3 cut(s) 90, 185, 319
HhaI GCGC 1 cut(s) 984
Hin1I GRCGYC 2 cut(s) 101, 330
Hin1II CATG 4 cut(s) 196, 281, 1090, 1206
Hin6I GCGC 1 cut(s) 982
HinP1I GCGC 1 cut(s) 982
HincII GTYRAC 2 cut(s) 85, 607
HindII GTYRAC 2 cut(s) 85, 607
HindIII AAGCTT 2 cut(s) 167, 501
HinfI GANTC 2 cut(s) 9, 1132
HpaI GTTAAC 1 cut(s) 607
HpaII CCGG 5 cut(s) 207, 535, 801, 968, 1038
HphI GGTGA 4 cut(s) 61, 298, 830, 1027
Hpy166II GTNNAC 6 cut(s) 52, 85, 607, 752, 925, 1111
Hpy188I TCNGA 5 cut(s) 240, 268, 523, 794, 1278
Hpy188III TCNNGA 4 cut(s) 157, 535, 562, 580
Hpy8I GTNNAC 6 cut(s) 52, 85, 607, 752, 925, 1111
Hpy99I CGWCG 3 cut(s) 106, 179, 335
HpyAV CCTTC 6 cut(s) 195, 532, 628, 754, 1191, 1332
HpyCH4III ACNGT 3 cut(s) 527, 1115, 1360
HpyCH4V TGCA 9 cut(s) 418, 443, 662, 728, 752, 1025, 1179, 1219, 1284
HpyF10VI GCNNNNNNNGC 3 cut(s) 440, 990, 999
HpyF3I CTNAG 2 cut(s) 1017, 1167
Hsp92I GRCGYC 2 cut(s) 101, 330
Hsp92II CATG 4 cut(s) 196, 281, 1090, 1206
HspAI GCGC 1 cut(s) 982
Kpn2I TCCGGA 1 cut(s) 534
Ksp22I TGATCA 1 cut(s) 316
KspAI GTTAAC 1 cut(s) 607
Kzo9I GATC 5 cut(s) 115, 153, 316, 1051, 1318
Lsp1109I GCAGC 1 cut(s) 455
LweI GCATC 5 cut(s) 126, 263, 430, 546, 715
MaeI CTAG 3 cut(s) 453, 569, 678
MaeIII GTNAC 2 cut(s) 767, 818
MalI GATC 5 cut(s) 117, 155, 318, 1053, 1320
MboI GATC 5 cut(s) 115, 153, 316, 1051, 1318
MboII GAAGA 5 cut(s) 255, 498, 883, 893, 1243
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 1 cut(s) 754
MlsI TGGCCA 1 cut(s) 845
MluCI AATT 8 cut(s) 234, 258, 656, 730, 1153, 1243, 1285, 1352
MluNI TGGCCA 1 cut(s) 845
MlyI GAGTC 2 cut(s) 18, 1126
MmeI TCCRAC 3 cut(s) 211, 334, 860
MnlI CCTC 8 cut(s) 58, 86, 883, 909, 940, 947, 1043, 1160
Mox20I TGGCCA 1 cut(s) 845
MroI TCCGGA 1 cut(s) 534
MroXI GAANNNNTTC 1 cut(s) 170
MscI TGGCCA 1 cut(s) 845
Msp20I TGGCCA 1 cut(s) 845
MspA1I CMGCKG 1 cut(s) 446
MspCI CTTAAG 2 cut(s) 395, 755
MspI CCGG 5 cut(s) 207, 535, 801, 968, 1038
MspR9I CCNGG 5 cut(s) 208, 437, 773, 968, 969
Mva1269I GAATGC 2 cut(s) 662, 832
MvaI CCWGG 2 cut(s) 437, 773
MwoI GCNNNNNNNGC 3 cut(s) 440, 990, 999
NciI CCSGG 3 cut(s) 208, 968, 969
NdeI CATATG 2 cut(s) 28, 1234
NdeII GATC 5 cut(s) 115, 153, 316, 1051, 1318
NlaIII CATG 4 cut(s) 196, 281, 1090, 1206
NlaIV GGNNCC 2 cut(s) 117, 895
NmeAIII GCCGAG 1 cut(s) 913
NmuCI GTSAC 1 cut(s) 818
NspI RCATGY 1 cut(s) 281
PcsI WCGNNNNNNNCGW 1 cut(s) 885
PctI GAATGC 2 cut(s) 662, 832
PdmI GAANNNNTTC 1 cut(s) 170
PflMI CCANNNNNTGG 1 cut(s) 778
PkrI GCNGC 1 cut(s) 445
PleI GAGTC 2 cut(s) 17, 1126
PpsI GAGTC 2 cut(s) 17, 1126
PsiI TTATAA 2 cut(s) 381, 1242
Psp6I CCWGG 2 cut(s) 435, 771
PspEI GGTNACC 1 cut(s) 767
PspGI CCWGG 2 cut(s) 435, 771
PspN4I GGNNCC 2 cut(s) 117, 895
PspPI GGNCC 4 cut(s) 433, 949, 1030, 1278
PsrI GAACNNNNNNTAC 2 cut(s) 1062, 1094
PsuI RGATCY 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 446
RsaI GTAC 5 cut(s) 676, 914, 926, 1071, 1085
RsaNI GTAC 5 cut(s) 675, 913, 925, 1070, 1084
SatI GCNGC 1 cut(s) 444
Sau3AI GATC 5 cut(s) 115, 153, 316, 1051, 1318
Sau96I GGNCC 4 cut(s) 433, 949, 1030, 1278
SchI GAGTC 2 cut(s) 18, 1126
ScrFI CCNGG 5 cut(s) 208, 437, 773, 968, 969
SduI GDGCHC 1 cut(s) 754
SfaNI GCATC 5 cut(s) 126, 263, 430, 546, 715
SfcI CTRYAG 1 cut(s) 810
SinI GGWCC 3 cut(s) 949, 1030, 1278
SmaI CCCGGG 1 cut(s) 969
SmlI CTYRAG 6 cut(s) 69, 140, 395, 560, 578, 755
SmoI CTYRAG 6 cut(s) 69, 140, 395, 560, 578, 755
Sse9I AATT 8 cut(s) 234, 258, 656, 730, 1153, 1243, 1285, 1352
SspMI CTAG 3 cut(s) 453, 569, 678
StyD4I CCNGG 5 cut(s) 206, 435, 771, 966, 967
TaaI ACNGT 3 cut(s) 527, 1115, 1360
TaqI TCGA 3 cut(s) 7, 174, 333
TaqII GACCGA 1 cut(s) 74
TasI AATT 8 cut(s) 234, 258, 656, 730, 1153, 1243, 1285, 1352
TatI WGTACW 1 cut(s) 1083
TscAI CASTG 3 cut(s) 946, 992, 1120
TseFI GTSAC 1 cut(s) 818
TseI GCWGC 1 cut(s) 443
Tsp45I GTSAC 1 cut(s) 818
TspDTI ATGAA 4 cut(s) 209, 513, 610, 884
TspMI CCCGGG 1 cut(s) 967
TspRI CASTG 3 cut(s) 946, 992, 1120
Van91I CCANNNNNTGG 1 cut(s) 778
Vha464I CTTAAG 2 cut(s) 395, 755
VneI GTGCAC 1 cut(s) 750
VpaK11BI GGWCC 3 cut(s) 949, 1030, 1278
XapI RAATTY 4 cut(s) 234, 656, 730, 1352
XceI RCATGY 1 cut(s) 281
XcmI CCANNNNNNNNNTGG 1 cut(s) 838
XmaI CCCGGG 1 cut(s) 967
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 3 cut(s) 453, 569, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.