Rh2BG280700

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
30653592 .. 30656272
2681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG280700.1

Sequence Viewer

Length: 1437 bp
ATGGTTCGAGTCTCAATTCTTGTAACATGTGTCATCTCTCTAATGTTTGTGGTCTTGACAGACCATGCTCAAGGTTTAGGTGTCAACTGGGGAGCAATGGCATCGCACCCTTTGGATCCCAGCAATGTAGTAAAAATGCTCAAGGACAATGGGATCAAGAGAGTAAAGCTTTTCGACGCAGAGCCTGCCACCATGAAGGCCTTGTCCGGGTCAGGTATTTCGGTCATTGTTGGAATTCCCAACGAAAAATTGGCCTCAATTTCTTTGGCTTACAAACATGCCCAAGAGTGGGTGAAAGAAAATATCACCAAATATGATAATAATGGGGGCGTTGATATCAGCTATGTGGCTGTTGGAAACGAGCCATTCTTAACAAGTTACAATGGGAGTTTTCTCAAGACTACTTTTCCAGCATTGCAAAACATTCAAAAGGCCCTAGATGAAGCTGGCACTAGACAGAAAATCAAAGCCATAGTGCCCTTCAACGCTGATGTTTATGAATCTGCTTCGGGCAAACCATCAGATGGTCAGTTCCGAAAAGACATCAAAAGTGAGATGCTCAAGATACTAGGTTTGCTCAAGAGCAATAAGTCTCCGTTTTTCGTTAACATATATCCCTTCCTTAGTCTCCAGCAAAGCTCTGATTTCCCCAAAGAATTTGCCTTCTTTGATGGTACTAGTAAACCTGTTCAAGACAACAACTACCAATATACCAATGTGTTTGATGCAAATCATGACACACTTATTTGGTCACTCAAGAAGGTTGGCAACCAGGACTTGGACATAGTTATTGGAGAAGCCGGATGGCCTACAGATGGTGACAAGAATGCCAATAAAATTTTGGCCAAGAAATTCTATGATGGACTTCTCAAGAAATTAACAAAGGCGGACGGAACCCCTCTTCGAAAAGGGTACTTGGAAGTGTACCTTTTTGGGCTCACTGACGAGGACAAAAAAAGTATTGCCCCAGGGGACTTTGAGCGCCACTGGGGCATCTTAGGCTATGATGGAAAACCCAAGTTCCCAATGGACCTCACCGGGAAAGGGAACAATAATATGCTCAAGGCGGTACAAGGAGTGCAGTACATGGACAAGCAATGGTGTGTCTTGAACGGCGATGTTCGAAATGAGACTCTGTTAAAAACCGAACTCAGTTACGCTTGTTCTCAGACGGATTGCACATCTTTGGGAAGTGGAAGGTCATGCGATTTGGATTTGCCGGGGAAAGTCTCCTATGCTTTCAATTCATTCTTCCAAAGCAGAGACCAAGACGTTCGGACCTGCAATTTTGATGGCAAGGGAACGATTACAAAAAACGATCCTTCTAAAGGAACTTGCGTATTCAATATACAGATTTACAGTGCGGCAGTGAGGCATCAAGTGACTTATGCATTGAGTATCTTTGCAGGACTAGTCTTGATGACTTTCTTACATTAA

Protein Analysis

478

Amino Acids

52.84

Weight (kDa)

8.43

Isoelectric Point (pI)

29.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 26 - 344 5.2e-61 Glycosyl hydrolases family 17
X8 PF07983 366 - 435 2e-13 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1289
AccB7I CCANNNNNTGG 2 cut(s) 524, 778
AciI CCGC 3 cut(s) 887, 1067, 1364
AclWI GGATC 4 cut(s) 110, 123, 161, 1313
AcoI YGGCCR 1 cut(s) 843
AcsI RAATTY 4 cut(s) 234, 656, 837, 851
AfaI GTAC 5 cut(s) 676, 914, 926, 1071, 1085
AfiI CCNNNNNNNGG 8 cut(s) 207, 288, 289, 524, 778, 815, 1044, 1328
AflIII ACRYGT 1 cut(s) 26
AgsI TTSAA 6 cut(s) 428, 484, 692, 1111, 1243, 1345
AhlI ACTAGT 2 cut(s) 677, 1411
AjnI CCWGG 2 cut(s) 771, 967
AluBI AGCT 4 cut(s) 169, 342, 446, 639
AluI AGCT 4 cut(s) 169, 342, 446, 639
Alw26I GTCTC 6 cut(s) 16, 597, 632, 1124, 1234, 1257
AlwI GGATC 4 cut(s) 110, 123, 161, 1313
AlwNI CAGNNNCTG 1 cut(s) 185
AoxI GGCC 5 cut(s) 198, 252, 432, 806, 843
ApoI RAATTY 4 cut(s) 234, 656, 837, 851
AspLEI GCGC 1 cut(s) 984
AspS9I GGNCC 3 cut(s) 433, 1030, 1278
AsuC2I CCSGG 3 cut(s) 208, 1039, 1221
AsuHPI GGTGA 4 cut(s) 298, 304, 830, 1027
AsuII TTCGAA 2 cut(s) 904, 1123
AvaII GGWCC 2 cut(s) 1030, 1278
BaeGI GKGCMC 1 cut(s) 480
BalI TGGCCA 1 cut(s) 845
BamHI GGATCC 1 cut(s) 115
BanII GRGCYC 1 cut(s) 939
BccI CCATC 8 cut(s) 518, 526, 665, 798, 809, 854, 1001, 1286
BceAI ACGGC 1 cut(s) 1129
BcgI CGANNNNNNTGC 2 cut(s) 84, 118
BciT130I CCWGG 2 cut(s) 773, 969
BcnI CCSGG 3 cut(s) 208, 1039, 1221
BcoDI GTCTC 6 cut(s) 16, 597, 632, 1124, 1234, 1257
BcuI ACTAGT 2 cut(s) 677, 1411
BfaI CTAG 5 cut(s) 437, 453, 569, 678, 1412
BfmI CTRYAG 1 cut(s) 810
BfoI RGCGCY 1 cut(s) 985
BfuAI ACCTGC 1 cut(s) 1289
BglI GCCNNNNNGGC 1 cut(s) 990
BisI GCNGC 1 cut(s) 1365
BlsI GCNGC 1 cut(s) 1366
Bme1390I CCNGG 5 cut(s) 208, 773, 969, 1039, 1221
Bme18I GGWCC 2 cut(s) 1030, 1278
BmgT120I GGNCC 3 cut(s) 433, 1030, 1278
BmiI GGNNCC 2 cut(s) 117, 895
BmrFI CCNGG 5 cut(s) 208, 773, 969, 1039, 1221
BmrI ACTGGG 2 cut(s) 97, 997
BmsI GCATC 5 cut(s) 110, 546, 715, 1002, 1384
BmuI ACTGGG 2 cut(s) 97, 997
BpmI CTGGAG 1 cut(s) 614
Bpu14I TTCGAA 2 cut(s) 904, 1123
BpuEI CTTGAG 8 cut(s) 54, 125, 380, 545, 563, 740, 854, 1046
BpuMI CCSGG 3 cut(s) 208, 1039, 1221
BsaBI GATNNNNATC 1 cut(s) 729
BsaI GGTCTC 1 cut(s) 1257
BsaJI CCNNGG 3 cut(s) 967, 968, 1220
Bsc4I CCNNNNNNNGG 8 cut(s) 207, 288, 289, 524, 778, 815, 1044, 1328
Bse1I ACTGG 2 cut(s) 92, 992
Bse3DI GCAATG 4 cut(s) 102, 130, 413, 1103
Bse8I GATNNNNATC 1 cut(s) 729
BseBI CCWGG 2 cut(s) 773, 969
BseDI CCNNGG 3 cut(s) 967, 968, 1220
BseGI GGATG 1 cut(s) 809
BseJI GATNNNNATC 1 cut(s) 729
BseLI CCNNNNNNNGG 8 cut(s) 207, 288, 289, 524, 778, 815, 1044, 1328
BseMI GCAATG 4 cut(s) 102, 130, 413, 1103
BseMII CTCAG 2 cut(s) 1165, 1181
BseNI ACTGG 2 cut(s) 92, 992
BseSI GKGCMC 1 cut(s) 480
BseYI CCCAGC 1 cut(s) 119
BsgI GTGCAG 1 cut(s) 1100
BshFI GGCC 5 cut(s) 200, 254, 434, 808, 845
BsiSI CCGG 4 cut(s) 207, 801, 1038, 1220
BslFI GGGAC 1 cut(s) 986
BslI CCNNNNNNNGG 8 cut(s) 207, 288, 289, 524, 778, 815, 1044, 1328
BsmAI GTCTC 6 cut(s) 16, 597, 632, 1124, 1234, 1257
BsmFI GGGAC 1 cut(s) 986
BsmI GAATGC 1 cut(s) 832
BsnI GGCC 5 cut(s) 200, 254, 434, 808, 845
Bso31I GGTCTC 1 cut(s) 1257
Bsp119I TTCGAA 2 cut(s) 904, 1123
Bsp1286I GDGCHC 2 cut(s) 480, 939
Bsp143I GATC 3 cut(s) 115, 153, 1318
BspACI CCGC 3 cut(s) 887, 1067, 1364
BspANI GGCC 5 cut(s) 200, 254, 434, 808, 845
BspCNI CTCAG 2 cut(s) 1164, 1180
BspHI TCATGA 1 cut(s) 733
BspLI GGNNCC 2 cut(s) 117, 895
BspMI ACCTGC 1 cut(s) 1289
BspPI GGATC 4 cut(s) 110, 123, 161, 1313
BspT104I TTCGAA 2 cut(s) 904, 1123
BspTNI GGTCTC 1 cut(s) 1257
BsrDI GCAATG 4 cut(s) 102, 130, 413, 1103
BsrI ACTGG 2 cut(s) 92, 992
BssECI CCNNGG 3 cut(s) 967, 968, 1220
BssMI GATC 3 cut(s) 115, 153, 1318
Bst2UI CCWGG 2 cut(s) 773, 969
Bst4CI ACNGT 1 cut(s) 1361
Bst6I CTCTTC 1 cut(s) 906
BstAPI GCANNNNNTGC 1 cut(s) 185
BstBI TTCGAA 2 cut(s) 904, 1123
BstC8I GCNNGC 2 cut(s) 186, 448
BstDEI CTNAG 4 cut(s) 623, 997, 1151, 1167
BstENI CCTNNNNNAGG 1 cut(s) 1326
BstF5I GGATG 1 cut(s) 809
BstH2I RGCGCY 1 cut(s) 985
BstHHI GCGC 1 cut(s) 984
BstKTI GATC 3 cut(s) 118, 156, 1321
BstMAI GTCTC 6 cut(s) 16, 597, 632, 1124, 1234, 1257
BstMBI GATC 3 cut(s) 115, 153, 1318
BstMWI GCNNNNNNNGC 3 cut(s) 185, 990, 999
BstNI CCWGG 2 cut(s) 773, 969
BstNSI RCATGY 2 cut(s) 30, 281
BstSCI CCNGG 5 cut(s) 206, 771, 967, 1037, 1219
BstSFI CTRYAG 1 cut(s) 810
BstSLI GKGCMC 1 cut(s) 480
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BsuRI GGCC 5 cut(s) 200, 254, 434, 808, 845
BtgZI GCGATG 2 cut(s) 87, 1131
BtsCI GGATG 1 cut(s) 809
BtsI GCAGTG 1 cut(s) 1374
BtsIMutI CAGTG 4 cut(s) 939, 985, 1366, 1374
BveI ACCTGC 1 cut(s) 1289
Cac8I GCNNGC 2 cut(s) 186, 448
CaiI CAGNNNCTG 1 cut(s) 185
CciI TCATGA 1 cut(s) 733
CfoI GCGC 1 cut(s) 984
Cfr13I GGNCC 3 cut(s) 433, 1030, 1278
CseI GACGC 1 cut(s) 185
Csp6I GTAC 5 cut(s) 675, 913, 925, 1070, 1084
CviAII CATG 7 cut(s) 27, 65, 193, 278, 734, 1087, 1203
CviQI GTAC 5 cut(s) 675, 913, 925, 1070, 1084
DdeI CTNAG 4 cut(s) 623, 997, 1151, 1167
DpnI GATC 3 cut(s) 117, 155, 1320
DpnII GATC 3 cut(s) 115, 153, 1318
EaeI YGGCCR 1 cut(s) 843
Eam1104I CTCTTC 1 cut(s) 906
EarI CTCTTC 1 cut(s) 906
EciI GGCGGA 1 cut(s) 902
Eco147I AGGCCT 1 cut(s) 200
Eco24I GRGCYC 1 cut(s) 939
Eco31I GGTCTC 1 cut(s) 1257
Eco32I GATATC 1 cut(s) 337
Eco47I GGWCC 2 cut(s) 1030, 1278
EcoNI CCTNNNNNAGG 1 cut(s) 1326
EcoO109I RGGNCCY 1 cut(s) 433
EcoRI GAATTC 1 cut(s) 234
EcoRII CCWGG 2 cut(s) 771, 967
EcoRV GATATC 1 cut(s) 337
EcoT22I ATGCAT 1 cut(s) 1393
EcoT38I GRGCYC 1 cut(s) 939
FaeI CATG 7 cut(s) 30, 68, 196, 281, 737, 1090, 1206
FalI AAGNNNNNCTT 2 cut(s) 912, 944
FaqI GGGAC 1 cut(s) 986
FatI CATG 7 cut(s) 26, 64, 192, 277, 733, 1086, 1202
Fnu4HI GCNGC 1 cut(s) 1365
FokI GGATG 1 cut(s) 816
FriOI GRGCYC 1 cut(s) 939
Fsp4HI GCNGC 1 cut(s) 1365
FspBI CTAG 5 cut(s) 437, 453, 569, 678, 1412
GlaI GCGC 1 cut(s) 983
GluI GCNGC 1 cut(s) 1365
GsaI CCCAGC 1 cut(s) 123
GsuI CTGGAG 1 cut(s) 614
HaeII RGCGCY 1 cut(s) 985
HaeIII GGCC 5 cut(s) 200, 254, 434, 808, 845
HapII CCGG 4 cut(s) 207, 801, 1038, 1220
HgaI GACGC 1 cut(s) 185
HhaI GCGC 1 cut(s) 984
Hin1II CATG 7 cut(s) 30, 68, 196, 281, 737, 1090, 1206
Hin6I GCGC 1 cut(s) 982
HinP1I GCGC 1 cut(s) 982
HincII GTYRAC 2 cut(s) 85, 607
HindII GTYRAC 2 cut(s) 85, 607
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 3 cut(s) 9, 500, 1132
HpaI GTTAAC 1 cut(s) 607
HpaII CCGG 4 cut(s) 207, 801, 1038, 1220
HphI GGTGA 4 cut(s) 298, 304, 830, 1027
Hpy166II GTNNAC 4 cut(s) 85, 607, 683, 925
Hpy188I TCNGA 5 cut(s) 523, 536, 643, 1170, 1278
Hpy8I GTNNAC 4 cut(s) 85, 607, 683, 925
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 7 cut(s) 190, 490, 628, 673, 754, 1191, 1332
HpyCH4III ACNGT 1 cut(s) 1361
HpyCH4IV ACGT 1 cut(s) 1272
HpyCH4V TGCA 7 cut(s) 418, 728, 1081, 1179, 1284, 1391, 1406
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 990, 999
HpyF3I CTNAG 4 cut(s) 623, 997, 1151, 1167
HpySE526I ACGT 1 cut(s) 1272
Hsp92II CATG 7 cut(s) 30, 68, 196, 281, 737, 1090, 1206
HspAI GCGC 1 cut(s) 982
KspAI GTTAAC 1 cut(s) 607
Kzo9I GATC 3 cut(s) 115, 153, 1318
LmnI GCTCC 1 cut(s) 92
LweI GCATC 5 cut(s) 110, 546, 715, 1002, 1384
MaeI CTAG 5 cut(s) 437, 453, 569, 678, 1412
MaeII ACGT 1 cut(s) 1272
MaeIII GTNAC 6 cut(s) 22, 377, 750, 818, 1154, 1381
MalI GATC 3 cut(s) 117, 155, 1320
MboI GATC 3 cut(s) 115, 153, 1318
MboII GAAGA 2 cut(s) 893, 1243
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 2 cut(s) 480, 939
MlsI TGGCCA 1 cut(s) 845
MluNI TGGCCA 1 cut(s) 845
MlyI GAGTC 2 cut(s) 18, 1126
MmeI TCCRAC 2 cut(s) 211, 334
MnlI CCTC 5 cut(s) 265, 909, 940, 1043, 1365
Mox20I TGGCCA 1 cut(s) 845
Mph1103I ATGCAT 1 cut(s) 1393
MscI TGGCCA 1 cut(s) 845
MseI TTAA 5 cut(s) 371, 606, 878, 1139, 1435
Msp20I TGGCCA 1 cut(s) 845
MspI CCGG 4 cut(s) 207, 801, 1038, 1220
MspR9I CCNGG 5 cut(s) 208, 773, 969, 1039, 1221
Mva1269I GAATGC 1 cut(s) 832
MvaI CCWGG 2 cut(s) 773, 969
MwoI GCNNNNNNNGC 3 cut(s) 185, 990, 999
NciI CCSGG 3 cut(s) 208, 1039, 1221
NdeII GATC 3 cut(s) 115, 153, 1318
NlaIII CATG 7 cut(s) 30, 68, 196, 281, 737, 1090, 1206
NlaIV GGNNCC 2 cut(s) 117, 895
NmuCI GTSAC 3 cut(s) 750, 818, 1381
NsiI ATGCAT 1 cut(s) 1393
NspI RCATGY 2 cut(s) 30, 281
NspV TTCGAA 2 cut(s) 904, 1123
PagI TCATGA 1 cut(s) 733
PasI CCCWGGG 1 cut(s) 968
PceI AGGCCT 1 cut(s) 200
PciI ACATGT 1 cut(s) 26
PctI GAATGC 1 cut(s) 832
PfeI GAWTC 1 cut(s) 500
PflMI CCANNNNNTGG 2 cut(s) 524, 778
PkrI GCNGC 1 cut(s) 1366
PleI GAGTC 2 cut(s) 17, 1126
PpsI GAGTC 2 cut(s) 17, 1126
PscI ACATGT 1 cut(s) 26
Psp6I CCWGG 2 cut(s) 771, 967
PspFI CCCAGC 1 cut(s) 119
PspGI CCWGG 2 cut(s) 771, 967
PspN4I GGNNCC 2 cut(s) 117, 895
PspPI GGNCC 3 cut(s) 433, 1030, 1278
PstNI CAGNNNCTG 1 cut(s) 185
PsuI RGATCY 1 cut(s) 115
RsaI GTAC 5 cut(s) 676, 914, 926, 1071, 1085
RsaNI GTAC 5 cut(s) 675, 913, 925, 1070, 1084
SaqAI TTAA 5 cut(s) 371, 606, 878, 1139, 1435
SatI GCNGC 1 cut(s) 1365
Sau3AI GATC 3 cut(s) 115, 153, 1318
Sau96I GGNCC 3 cut(s) 433, 1030, 1278
SchI GAGTC 2 cut(s) 18, 1126
ScrFI CCNGG 5 cut(s) 208, 773, 969, 1039, 1221
SduI GDGCHC 2 cut(s) 480, 939
SfaNI GCATC 5 cut(s) 110, 546, 715, 1002, 1384
SfcI CTRYAG 1 cut(s) 810
SfuI TTCGAA 2 cut(s) 904, 1123
SinI GGWCC 2 cut(s) 1030, 1278
SmlI CTYRAG 8 cut(s) 69, 140, 395, 560, 578, 755, 869, 1061
SmoI CTYRAG 8 cut(s) 69, 140, 395, 560, 578, 755, 869, 1061
SpeI ACTAGT 2 cut(s) 677, 1411
SseBI AGGCCT 1 cut(s) 200
SsiI CCGC 3 cut(s) 887, 1067, 1364
SspMI CTAG 5 cut(s) 437, 453, 569, 678, 1412
StuI AGGCCT 1 cut(s) 200
StyD4I CCNGG 5 cut(s) 206, 771, 967, 1037, 1219
TaaI ACNGT 1 cut(s) 1361
TaiI ACGT 1 cut(s) 1275
TaqI TCGA 4 cut(s) 7, 174, 904, 1123
TaqII GACCGA 1 cut(s) 211
TatI WGTACW 1 cut(s) 1083
TauI GCSGC 1 cut(s) 1367
TfiI GAWTC 1 cut(s) 500
Tru1I TTAA 5 cut(s) 371, 606, 878, 1139, 1435
Tru9I TTAA 5 cut(s) 371, 606, 878, 1139, 1435
TscAI CASTG 4 cut(s) 946, 992, 1366, 1374
TseFI GTSAC 3 cut(s) 750, 818, 1381
Tsp45I GTSAC 3 cut(s) 750, 818, 1381
TspDTI ATGAA 4 cut(s) 209, 456, 513, 1236
TspGWI ACGGA 3 cut(s) 585, 906, 1187
TspRI CASTG 4 cut(s) 946, 992, 1366, 1374
Van91I CCANNNNNTGG 2 cut(s) 524, 778
VpaK11BI GGWCC 2 cut(s) 1030, 1278
XagI CCTNNNNNAGG 1 cut(s) 1326
XapI RAATTY 4 cut(s) 234, 656, 837, 851
XceI RCATGY 2 cut(s) 30, 281
XcmI CCANNNNNNNNNTGG 3 cut(s) 247, 838, 1024
XspI CTAG 5 cut(s) 437, 453, 569, 678, 1412
Zsp2I ATGCAT 1 cut(s) 1393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.