Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004173

Physical Location & Seq

Genomic Coordinates Reverse (-)

26189716 .. 26190591

Gene Structure 876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCTACAACAGAAACAATCATACAAGGAGCAATTCTGGTGTTAACCTTGGTTATGTTCTGGGCGATTAAGTATCTCTCTCAACGAGGCCTAACCAAATTCCGAACCAAACACCGAGCCACACTCCAAACCCAGCGTCAGCTAATCCAAGCCTCACGTCTCCTAGCTCGAGCCCGAACCACACCCAAGAAATCTCAATCTCAATCTCTCGCCAAAACGGCGCTCACCGAAGCTGATAATGTGATCGCGATTTCTCCAGATGATGCCGCCGGTCACATCGTCCGTGCCCTAGCTCTAGATCTGCTCGGTCACCATACTTCTGCTCTCAAATCGTTCGATATGGCGCTGACTTATCCGCGTTTGAAGTCGCTTTCGGTTGGAGAACGAGCCGATGCGCTTGTGAAGAGAGCTGAGATGAAGCTGGCTGTGAATCGGCGACGGAGGATTGATTCGGCGGTCGAGGATCTGGAAGAGGCGGTGAGGCTCGCCGCCGGTACAGATACGGCGAGATTGTTCCGGCTGTTGGGAGAGTGTTATGAGTTCAAGGGCTTGAAAGAGAAAGCCCAGTGGGCCTTTAATGAAGCTTTAAAAGCTCAACCTAGTTCCGTAAACGGCACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_2 TPR_8

Protein Analysis

206

Amino Acids

22.8

Weight (kDa)

10.14

Isoelectric Point (pI)

35.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65520
fragaria_vesca	FvH4_1g19520 FvH4_5g34561 FvH4_5g34561 FvH4_5g34561 FvH4_5g34561 FvH4_5g34561
malus_domestica	MD08G1200200.v1.1 MD15G1310800.v1.1 MD15G1387400.v1.1
prunus_persica	Prupe.1G533800_v2.0.a1 Prupe.6G203100_v2.0.a1
pyrus_communis	pycom01g06830 pycom08g17360 pycom15g34740
rosa_chinensis	RchiOBHm_Chr2g0111021 RchiOBHm_Chr7g0235251
rosa_laevigata	RLG00000017858
rosa_multiflora	Rmu_sc0003994.1_g000008 Rmu_sc0004637.1_g000006 Rmu_sc0004657.1_g000046 Rmu_sc0005947.1_g000017
rosa_roxburghii	Rroxscaffold_3G00226160 Rroxscaffold_4G00298550 Rroxscaffold_7G00215170
rosa_rugosa	Rorug02G0170600 Rorug07G0289300
rosa_samantha	Rh2AG222600 Rh2BG234700 Rh2CG226000 Rh2DG230500
rosa_wichuraiana	Rw2G017200 Rw7G036900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	248, 358
AciI	CCGC	5 cut(s)	267, 356, 455, 476, 489
AclWI	GGATC	1 cut(s)	471
AcsI	RAATTY	1 cut(s)	98
AcvI	CACGTG	1 cut(s)	618
AfaI	GTAC	1 cut(s)	496
AfiI	CCNNNNNNNGG	1 cut(s)	523
AgsI	TTSAA	3 cut(s)	364, 544, 553
AjiI	CACGTC	1 cut(s)	158
AluBI	AGCT	8 cut(s)	142, 167, 233, 293, 410, 421, 584, 593
AluI	AGCT	8 cut(s)	142, 167, 233, 293, 410, 421, 584, 593
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	1 cut(s)	471
Ama87I	CYCGRG	1 cut(s)	168
AoxI	GGCC	2 cut(s)	88, 570
ApoI	RAATTY	1 cut(s)	98
ArsI	GACNNNNNNTTYG	2 cut(s)	121, 153
AspLEI	GCGC	3 cut(s)	223, 346, 397
AspS9I	GGNCC	1 cut(s)	570
AsuHPI	GGTGA	3 cut(s)	217, 302, 490
AvaI	CYCGRG	1 cut(s)	168
BaeGI	GKGCMC	1 cut(s)	289
BanII	GRGCYC	1 cut(s)	175
BbrPI	CACGTG	1 cut(s)	618
BceAI	ACGGC	2 cut(s)	234, 519
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	4 cut(s)	164, 290, 296, 600
BfoI	RGCGCY	2 cut(s)	224, 347
BglI	GCCNNNNNGGC	2 cut(s)	218, 569
BglII	AGATCT	1 cut(s)	298
BisI	GCNGC	2 cut(s)	267, 489
BlsI	GCNGC	2 cut(s)	268, 490
BmeT110I	CYCGRG	1 cut(s)	168
BmgBI	CACGTC	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	570
BmrI	ACTGGG	1 cut(s)	559
BmsI	GCATC	2 cut(s)	253, 382
BmuI	ACTGGG	1 cut(s)	559
BplI	GAGNNNNNCTC	2 cut(s)	108, 140
BpmI	CTGGAG	1 cut(s)	240
BsaAI	YACGTR	1 cut(s)	618
BsaJI	CCNNGG	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
Bse118I	RCCGGY	2 cut(s)	269, 491
Bse1I	ACTGG	1 cut(s)	565
BseDI	CCNNGG	1 cut(s)	48
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseMII	CTCAG	1 cut(s)	402
BseNI	ACTGG	1 cut(s)	565
BseSI	GKGCMC	1 cut(s)	289
BseYI	CCCAGC	1 cut(s)	132
Bsh1236I	CGCG	2 cut(s)	248, 358
Bsh1285I	CGRYCG	1 cut(s)	459
BshFI	GGCC	2 cut(s)	90, 572
BsiEI	CGRYCG	1 cut(s)	459
BsiHKCI	CYCGRG	1 cut(s)	168
BsiSI	CCGG	3 cut(s)	270, 492, 517
BslI	CCNNNNNNNGG	1 cut(s)	523
BsmAI	GTCTC	1 cut(s)	164
BsmBI	CGTCTC	1 cut(s)	164
BsnI	GGCC	2 cut(s)	90, 572
BsoBI	CYCGRG	1 cut(s)	168
Bsp1286I	GDGCHC	2 cut(s)	175, 289
Bsp143I	GATC	3 cut(s)	243, 298, 463
Bsp68I	TCGCGA	1 cut(s)	248
BspACI	CCGC	5 cut(s)	267, 356, 455, 476, 489
BspANI	GGCC	2 cut(s)	90, 572
BspCNI	CTCAG	1 cut(s)	403
BspFNI	CGCG	2 cut(s)	248, 358
BspPI	GGATC	1 cut(s)	471
BsrFI	RCCGGY	2 cut(s)	269, 491
BsrI	ACTGG	1 cut(s)	565
BssAI	RCCGGY	2 cut(s)	269, 491
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	3 cut(s)	243, 298, 463
BssT1I	CCWWGG	1 cut(s)	48
Bst6I	CTCTTC	2 cut(s)	398, 465
BstBAI	YACGTR	1 cut(s)	618
BstC8I	GCNNGC	2 cut(s)	423, 486
BstDEI	CTNAG	1 cut(s)	411
BstEII	GGTNACC	1 cut(s)	308
BstFNI	CGCG	2 cut(s)	248, 358
BstH2I	RGCGCY	2 cut(s)	224, 347
BstHHI	GCGC	3 cut(s)	223, 346, 397
BstKTI	GATC	3 cut(s)	246, 301, 466
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	3 cut(s)	243, 298, 463
BstMCI	CGRYCG	1 cut(s)	459
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 569, 590
BstPI	GGTNACC	1 cut(s)	308
BstSLI	GKGCMC	1 cut(s)	289
BstUI	CGCG	2 cut(s)	248, 358
BstX2I	RGATCY	2 cut(s)	298, 463
BstYI	RGATCY	2 cut(s)	298, 463
BsuRI	GGCC	2 cut(s)	90, 572
BtrI	CACGTC	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	572
BtuMI	TCGCGA	1 cut(s)	248
Cac8I	GCNNGC	2 cut(s)	423, 486
CfoI	GCGC	3 cut(s)	223, 346, 397
Cfr10I	RCCGGY	2 cut(s)	269, 491
Cfr13I	GGNCC	1 cut(s)	570
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	495
CviQI	GTAC	1 cut(s)	495
DdeI	CTNAG	1 cut(s)	411
DpnI	GATC	3 cut(s)	245, 300, 465
DpnII	GATC	3 cut(s)	243, 298, 463
DraI	TTTAAA	1 cut(s)	588
Eam1104I	CTCTTC	2 cut(s)	398, 465
EarI	CTCTTC	2 cut(s)	398, 465
Eco130I	CCWWGG	1 cut(s)	48
Eco147I	AGGCCT	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	175
Eco72I	CACGTG	1 cut(s)	618
Eco88I	CYCGRG	1 cut(s)	168
Eco91I	GGTNACC	1 cut(s)	308
EcoO65I	GGTNACC	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	48
EcoT38I	GRGCYC	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	48
Esp3I	CGTCTC	1 cut(s)	164
FaiI	YATR	5 cut(s)	23, 56, 315, 341, 537
Fnu4HI	GCNGC	2 cut(s)	267, 489
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	2 cut(s)	267, 489
FspBI	CTAG	4 cut(s)	164, 290, 296, 600
GlaI	GCGC	3 cut(s)	222, 345, 396
GluI	GCNGC	2 cut(s)	267, 489
GsaI	CCCAGC	1 cut(s)	136
GsuI	CTGGAG	1 cut(s)	240
HaeII	RGCGCY	2 cut(s)	224, 347
HaeIII	GGCC	2 cut(s)	90, 572
HapII	CCGG	3 cut(s)	270, 492, 517
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	3 cut(s)	223, 346, 397
Hin6I	GCGC	3 cut(s)	221, 344, 395
HinP1I	GCGC	3 cut(s)	221, 344, 395
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HindIII	AAGCTT	1 cut(s)	582
HinfI	GANTC	2 cut(s)	430, 449
HpaI	GTTAAC	1 cut(s)	45
HpaII	CCGG	3 cut(s)	270, 492, 517
HphI	GGTGA	3 cut(s)	217, 302, 490
Hpy166II	GTNNAC	2 cut(s)	45, 610
Hpy188I	TCNGA	1 cut(s)	104
Hpy188III	TCNNGA	4 cut(s)	247, 257, 296, 467
Hpy8I	GTNNAC	2 cut(s)	45, 610
Hpy99I	CGWCG	1 cut(s)	441
HpyCH4IV	ACGT	2 cut(s)	157, 617
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 569, 590
HpyF3I	CTNAG	1 cut(s)	411
HpySE526I	ACGT	2 cut(s)	157, 617
HspAI	GCGC	3 cut(s)	221, 344, 395
KspAI	GTTAAC	1 cut(s)	45
Kzo9I	GATC	3 cut(s)	243, 298, 463
LmnI	GCTCC	1 cut(s)	29
LweI	GCATC	2 cut(s)	253, 382
MaeI	CTAG	4 cut(s)	164, 290, 296, 600
MaeII	ACGT	2 cut(s)	157, 617
MaeIII	GTNAC	2 cut(s)	272, 308
MalI	GATC	3 cut(s)	245, 300, 465
MboI	GATC	3 cut(s)	243, 298, 463
MboII	GAAGA	2 cut(s)	415, 482
MflI	RGATCY	2 cut(s)	298, 463
MhlI	GDGCHC	2 cut(s)	175, 289
MluCI	AATT	2 cut(s)	33, 98
MmeI	TCCRAC	1 cut(s)	358
MnlI	CCTC	6 cut(s)	80, 163, 435, 454, 466, 474
MseI	TTAA	4 cut(s)	44, 69, 576, 587
MspI	CCGG	3 cut(s)	270, 492, 517
MvnI	CGCG	2 cut(s)	248, 358
MwoI	GCNNNNNNNGC	3 cut(s)	218, 569, 590
NdeII	GATC	3 cut(s)	243, 298, 463
NmuCI	GTSAC	2 cut(s)	272, 308
NruI	TCGCGA	1 cut(s)	248
PaeR7I	CTCGAG	1 cut(s)	168
PceI	AGGCCT	1 cut(s)	90
PfeI	GAWTC	2 cut(s)	430, 449
PkrI	GCNGC	2 cut(s)	268, 490
PmaCI	CACGTG	1 cut(s)	618
PmlI	CACGTG	1 cut(s)	618
Ppu21I	YACGTR	1 cut(s)	618
PspCI	CACGTG	1 cut(s)	618
PspEI	GGTNACC	1 cut(s)	308
PspFI	CCCAGC	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	570
PspXI	VCTCGAGB	1 cut(s)	168
PsuI	RGATCY	2 cut(s)	298, 463
RruI	TCGCGA	1 cut(s)	248
RsaI	GTAC	1 cut(s)	496
RsaNI	GTAC	1 cut(s)	495
SaqAI	TTAA	4 cut(s)	44, 69, 576, 587
SatI	GCNGC	2 cut(s)	267, 489
Sau3AI	GATC	3 cut(s)	243, 298, 463
Sau96I	GGNCC	1 cut(s)	570
SduI	GDGCHC	2 cut(s)	175, 289
SfaNI	GCATC	2 cut(s)	253, 382
Sfr274I	CTCGAG	1 cut(s)	168
SlaI	CTCGAG	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	168
SmoI	CTYRAG	1 cut(s)	168
Sse9I	AATT	2 cut(s)	33, 98
SseBI	AGGCCT	1 cut(s)	90
SsiI	CCGC	5 cut(s)	267, 356, 455, 476, 489
SspMI	CTAG	4 cut(s)	164, 290, 296, 600
StuI	AGGCCT	1 cut(s)	90
StyI	CCWWGG	1 cut(s)	48
TaiI	ACGT	2 cut(s)	160, 620
TaqI	TCGA	3 cut(s)	169, 336, 459
TaqII	GACCGA	1 cut(s)	296
TasI	AATT	2 cut(s)	33, 98
TauI	GCSGC	2 cut(s)	269, 491
TfiI	GAWTC	2 cut(s)	430, 449
Tru1I	TTAA	4 cut(s)	44, 69, 576, 587
Tru9I	TTAA	4 cut(s)	44, 69, 576, 587
TscAI	CASTG	1 cut(s)	572
TseFI	GTSAC	2 cut(s)	272, 308
Tsp45I	GTSAC	2 cut(s)	272, 308
TspDTI	ATGAA	2 cut(s)	431, 594
TspGWI	ACGGA	3 cut(s)	272, 454, 595
TspRI	CASTG	1 cut(s)	572
XapI	RAATTY	1 cut(s)	98
XbaI	TCTAGA	1 cut(s)	295
XhoI	CTCGAG	1 cut(s)	168
XspI	CTAG	4 cut(s)	164, 290, 296, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.