Rmu_sc0005947.1_g000017

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005947.1
OG0004173
Physical Location & Seq
Forward (+)
85442 .. 86086
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005947.1_g000017.1.cds

Sequence Viewer

Length: 645 bp
atggtagatgacattcttatccaaatcggcctagtcctcctcgtcgtcgtcaccttcctcttcattcacaacgttccccagaaagtcctcgccaacctccgcctccgcctcaaaagcaaatccggcatccaatccaagcgccacttcgtcctcggtgcccagctcctcgcccaagctagatccgcctcctccaagtcctccgccgcctccctctccaagcaagccctcgacgaagccgacaaggccatcgccctcgatcccaaagacgccgccgctcacatcctcaaagccctcgctctcgacgtccagggcttcaagacctccgccctcgacgccatcgacgtcgccctctccccactctgccgcaagagcctcgtcgacgccgagcgcggcgacgcgctcctcaagcgggccgagattaagatgtccatgaaccgacccgcccggcttgactcggtcatcgaggatttgactctcgccgtgaagctgagccctgaaaatgccaaggcgttttgcacgttgggggagtgctatgaggacaagaagatgacggaggaggccaagaaggcttacgaggaggctctgaagcttcatccacggttcgccgccgcgaaggaggcactggaccgccttgttccctcgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_2 TPR_8

Protein Analysis

214

Amino Acids

23.26

Weight (kDa)

9.06

Isoelectric Point (pI)

46.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 306, 345
AccB1I GGYRCC 1 cut(s) 155
AccBSI CCGCTC 1 cut(s) 275
AccI GTMKAC 1 cut(s) 378
AccII CGCG 3 cut(s) 390, 398, 611
AclI AACGTT 1 cut(s) 72
AclWI GGATC 2 cut(s) 174, 251
AcuI CTGAAG 1 cut(s) 605
AcyI GRCGYC 5 cut(s) 267, 303, 333, 342, 381
AfiI CCNNNNNNNGG 1 cut(s) 409
AgsI TTSAA 1 cut(s) 316
AjnI CCWGG 1 cut(s) 306
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
AluBI AGCT 4 cut(s) 163, 176, 487, 589
AluI AGCT 4 cut(s) 163, 176, 487, 589
AlwI GGATC 2 cut(s) 174, 251
AoxI GGCC 4 cut(s) 28, 243, 411, 558
AspLEI GCGC 3 cut(s) 141, 390, 400
AspS9I GGNCC 2 cut(s) 411, 625
AsuC2I CCSGG 1 cut(s) 445
AsuHPI GGTGA 1 cut(s) 43
AvaII GGWCC 1 cut(s) 625
BaeGI GKGCMC 1 cut(s) 160
BanI GGYRCC 1 cut(s) 155
BanII GRGCYC 1 cut(s) 494
BccI CCATC 2 cut(s) 254, 344
BceAI ACGGC 1 cut(s) 464
BcgI CGANNNNNNTGC 2 cut(s) 355, 389
BciT130I CCWGG 1 cut(s) 308
BcnI CCSGG 1 cut(s) 445
BfaI CTAG 2 cut(s) 32, 177
BfoI RGCGCY 1 cut(s) 142
BglI GCCNNNNNGGC 2 cut(s) 242, 566
BisI GCNGC 7 cut(s) 204, 270, 273, 364, 391, 606, 609
BlpI GCTNAGC 1 cut(s) 488
BlsI GCNGC 7 cut(s) 205, 271, 274, 365, 392, 607, 610
Bme1390I CCNGG 2 cut(s) 308, 445
Bme18I GGWCC 1 cut(s) 625
BmgT120I GGNCC 2 cut(s) 411, 625
BmiI GGNNCC 1 cut(s) 157
BmrFI CCNGG 2 cut(s) 308, 445
BmsI GCATC 1 cut(s) 135
Bpu1102I GCTNAGC 1 cut(s) 488
BpuEI CTTGAG 1 cut(s) 389
BpuMI CCSGG 1 cut(s) 445
BsaHI GRCGYC 5 cut(s) 267, 303, 333, 342, 381
BsaJI CCNNGG 4 cut(s) 151, 307, 504, 596
Bsc4I CCNNNNNNNGG 1 cut(s) 409
Bse1I ACTGG 1 cut(s) 627
BseBI CCWGG 1 cut(s) 308
BseDI CCNNGG 4 cut(s) 151, 307, 504, 596
BseGI GGATG 3 cut(s) 126, 279, 592
BseLI CCNNNNNNNGG 1 cut(s) 409
BseMII CTCAG 1 cut(s) 479
BseNI ACTGG 1 cut(s) 627
BseRI GAGGAG 6 cut(s) 29, 155, 178, 392, 569, 590
BseSI GKGCMC 1 cut(s) 160
BseYI CCCAGC 1 cut(s) 159
Bsh1236I CGCG 3 cut(s) 390, 398, 611
BshFI GGCC 4 cut(s) 30, 245, 413, 560
BshNI GGYRCC 1 cut(s) 155
BsiSI CCGG 2 cut(s) 123, 445
BslI CCNNNNNNNGG 1 cut(s) 409
BsnI GGCC 4 cut(s) 30, 245, 413, 560
Bsp1286I GDGCHC 2 cut(s) 160, 494
Bsp143I GATC 2 cut(s) 179, 256
Bsp1720I GCTNAGC 1 cut(s) 488
BspANI GGCC 4 cut(s) 30, 245, 413, 560
BspCNI CTCAG 1 cut(s) 480
BspFNI CGCG 3 cut(s) 390, 398, 611
BspLI GGNNCC 1 cut(s) 157
BspPI GGATC 2 cut(s) 174, 251
BspT107I GGYRCC 1 cut(s) 155
BsrBI CCGCTC 1 cut(s) 275
BsrI ACTGG 1 cut(s) 627
BssECI CCNNGG 4 cut(s) 151, 307, 504, 596
BssMI GATC 2 cut(s) 179, 256
BssNI GRCGYC 5 cut(s) 267, 303, 333, 342, 381
BssT1I CCWWGG 1 cut(s) 504
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 1 cut(s) 600
Bst6I CTCTTC 1 cut(s) 65
BstACI GRCGYC 5 cut(s) 267, 303, 333, 342, 381
BstC8I GCNNGC 2 cut(s) 222, 411
BstDEI CTNAG 1 cut(s) 488
BstDSI CCRYGG 1 cut(s) 596
BstF5I GGATG 3 cut(s) 126, 279, 592
BstFNI CGCG 3 cut(s) 390, 398, 611
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 3 cut(s) 141, 390, 400
BstKTI GATC 2 cut(s) 182, 259
BstMBI GATC 2 cut(s) 179, 256
BstMWI GCNNNNNNNGC 9 cut(s) 114, 123, 182, 242, 332, 369, 406, 566, 617
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 2 cut(s) 306, 443
BstSLI GKGCMC 1 cut(s) 160
BstUI CGCG 3 cut(s) 390, 398, 611
BstX2I RGATCY 1 cut(s) 179
BstYI RGATCY 1 cut(s) 179
BsuRI GGCC 4 cut(s) 30, 245, 413, 560
BtgI CCRYGG 1 cut(s) 596
BtgZI GCGATG 1 cut(s) 232
BtsCI GGATG 3 cut(s) 126, 279, 592
BtsIMutI CAGTG 1 cut(s) 620
Cac8I GCNNGC 2 cut(s) 222, 411
CfoI GCGC 3 cut(s) 141, 390, 400
Cfr13I GGNCC 2 cut(s) 411, 625
CseI GACGC 4 cut(s) 275, 341, 389, 404
CviAII CATG 1 cut(s) 430
DdeI CTNAG 1 cut(s) 488
DpnI GATC 2 cut(s) 181, 258
DpnII GATC 2 cut(s) 179, 256
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
EciI GGCGGA 5 cut(s) 89, 95, 172, 190, 313
Eco130I CCWWGG 1 cut(s) 504
Eco24I GRGCYC 1 cut(s) 494
Eco47I GGWCC 1 cut(s) 625
Eco57I CTGAAG 1 cut(s) 605
EcoRII CCWGG 1 cut(s) 306
EcoT14I CCWWGG 1 cut(s) 504
EcoT38I GRGCYC 1 cut(s) 494
ErhI CCWWGG 1 cut(s) 504
FaeI CATG 1 cut(s) 433
FaiI YATR 2 cut(s) 431, 534
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FatI CATG 1 cut(s) 429
FauI CCCGC 2 cut(s) 402, 448
FblI GTMKAC 1 cut(s) 378
Fnu4HI GCNGC 7 cut(s) 204, 270, 273, 364, 391, 606, 609
FokI GGATG 3 cut(s) 113, 266, 579
FriOI GRGCYC 1 cut(s) 494
Fsp4HI GCNGC 7 cut(s) 204, 270, 273, 364, 391, 606, 609
FspBI CTAG 2 cut(s) 32, 177
GlaI GCGC 3 cut(s) 140, 389, 399
GluI GCNGC 7 cut(s) 204, 270, 273, 364, 391, 606, 609
GsaI CCCAGC 1 cut(s) 163
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 4 cut(s) 30, 245, 413, 560
HapII CCGG 2 cut(s) 123, 445
HgaI GACGC 4 cut(s) 275, 341, 389, 404
HhaI GCGC 3 cut(s) 141, 390, 400
Hin1I GRCGYC 5 cut(s) 267, 303, 333, 342, 381
Hin1II CATG 1 cut(s) 433
Hin6I GCGC 3 cut(s) 139, 388, 398
HinP1I GCGC 3 cut(s) 139, 388, 398
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HindIII AAGCTT 1 cut(s) 587
HinfI GANTC 2 cut(s) 452, 472
HpaII CCGG 2 cut(s) 123, 445
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 379
Hpy188I TCNGA 1 cut(s) 585
Hpy188III TCNNGA 2 cut(s) 299, 316
Hpy8I GTNNAC 1 cut(s) 379
HpyAV CCTTC 3 cut(s) 64, 559, 607
HpyCH4III ACNGT 1 cut(s) 600
HpyCH4IV ACGT 4 cut(s) 72, 303, 342, 518
HpyCH4V TGCA 1 cut(s) 516
HpyF10VI GCNNNNNNNGC 9 cut(s) 114, 123, 182, 242, 332, 369, 406, 566, 617
HpyF3I CTNAG 1 cut(s) 488
HpySE526I ACGT 4 cut(s) 72, 303, 342, 518
Hsp92I GRCGYC 5 cut(s) 267, 303, 333, 342, 381
Hsp92II CATG 1 cut(s) 433
HspAI GCGC 3 cut(s) 139, 388, 398
Kzo9I GATC 2 cut(s) 179, 256
LmnI GCTCC 2 cut(s) 168, 405
LpnPI CCDG 8 cut(s) 92, 136, 173, 293, 320, 458, 507, 608
LweI GCATC 1 cut(s) 135
MaeI CTAG 2 cut(s) 32, 177
MaeII ACGT 4 cut(s) 72, 303, 342, 518
MaeIII GTNAC 1 cut(s) 49
MalI GATC 2 cut(s) 181, 258
MbiI CCGCTC 1 cut(s) 275
MboI GATC 2 cut(s) 179, 256
MboII GAAGA 2 cut(s) 52, 556
MflI RGATCY 1 cut(s) 179
MhlI GDGCHC 2 cut(s) 160, 494
MlyI GAGTC 2 cut(s) 446, 466
MseI TTAA 1 cut(s) 420
MspI CCGG 2 cut(s) 123, 445
MspR9I CCNGG 2 cut(s) 308, 445
MvaI CCWGG 1 cut(s) 308
MvnI CGCG 3 cut(s) 390, 398, 611
MwoI GCNNNNNNNGC 9 cut(s) 114, 123, 182, 242, 332, 369, 406, 566, 617
NciI CCSGG 1 cut(s) 445
NdeII GATC 2 cut(s) 179, 256
NlaIII CATG 1 cut(s) 433
NlaIV GGNNCC 1 cut(s) 157
NmeAIII GCCGAG 2 cut(s) 409, 439
NmuCI GTSAC 1 cut(s) 49
PcsI WCGNNNNNNNCGW 5 cut(s) 234, 300, 336, 339, 381
PflFI GACNNNGTC 1 cut(s) 455
PkrI GCNGC 7 cut(s) 205, 271, 274, 365, 392, 607, 610
PleI GAGTC 2 cut(s) 446, 466
PpsI GAGTC 2 cut(s) 446, 466
Psp1406I AACGTT 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 306
PspFI CCCAGC 1 cut(s) 159
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 157
PspPI GGNCC 2 cut(s) 411, 625
PsuI RGATCY 1 cut(s) 179
PsyI GACNNNGTC 1 cut(s) 455
SalI GTCGAC 1 cut(s) 377
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 7 cut(s) 204, 270, 273, 364, 391, 606, 609
Sau3AI GATC 2 cut(s) 179, 256
Sau96I GGNCC 2 cut(s) 411, 625
SchI GAGTC 2 cut(s) 446, 466
ScrFI CCNGG 2 cut(s) 308, 445
SduI GDGCHC 2 cut(s) 160, 494
SfaNI GCATC 1 cut(s) 135
SgrDI CGTCGACG 1 cut(s) 377
SinI GGWCC 1 cut(s) 625
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
SspMI CTAG 2 cut(s) 32, 177
StyD4I CCNGG 2 cut(s) 306, 443
StyI CCWWGG 1 cut(s) 504
TaaI ACNGT 1 cut(s) 600
TaiI ACGT 4 cut(s) 75, 306, 345, 521
TaqI TCGA 7 cut(s) 228, 255, 300, 330, 339, 378, 462
TaqII GACCGA 1 cut(s) 445
TauI GCSGC 7 cut(s) 206, 272, 275, 366, 393, 608, 611
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TscAI CASTG 1 cut(s) 627
TseFI GTSAC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 3 cut(s) 52, 446, 581
TspGWI ACGGA 1 cut(s) 566
TspRI CASTG 1 cut(s) 627
Tth111I GACNNNGTC 1 cut(s) 455
VpaK11BI GGWCC 1 cut(s) 625
XmiI GTMKAC 1 cut(s) 378
XspI CTAG 2 cut(s) 32, 177
ZraI GACGTC 2 cut(s) 304, 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.