Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004173

Physical Location & Seq

Genomic Coordinates Forward (+)

11780471 .. 11782737

Gene Structure 2267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g19520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGAAGTACAACAAAAGAGGCCCTGAAAAGCAAATATCACCCGTTTTGTCATCGTATAACACCGTGAACTCCGTCAAAAACCTTCTTCAGAAAATGGCAGCGGAGGTGGTGCTGCAGGTAGCTCTTCTCATCCTAACCCTCACCATATTCTACACCATCCACAAACTCTCCAAAAAAGCCCTCACCAAACTCCGAACCAACAACCGAGCCACCCTCCAAGCCACCCGCCACTTCGTTCTCGGATCCCAGCTCCTGACCCGAGCCCGATCCGCCCCGCACAAGACCCAGTCCCACTCCCACGCCAAAACCGCCCTAACCGAGGCCGAGATCGCTCTATCTCTCTCCCCCCGAGACCCGGGCCCGCACATCCTCAAGGCCCTGGCTCTTGATCTCCTCGGCCACCGCGCCGCCGCGTTGAGATCGCTGGACGCGGCGTTGTCGCCGCCGTGCGTGAAGTTACTCGCGGAGAGGGAGCGTGGGGAGGCGCTGGTGAAGAGAGCGGAGCTGAAGCTGGCGGTGAATAGACGGCGAAGGGTTGACTCGGCGGTGGAGGACCTGGTTGAGGCGGTTGGGCTGAGTGAGGGTGAGGGTGATACGACGGCGTTTTGTTTGTTGGGTCAGTGTTACGAGTGGAAGAATATGAGGGAGGAAGCTAGGGAGGCGTTCGAGCGGGCCTTGAGGATGGATTCTGGGTCCGTTTTGGCCCGGCAAGGCTTGGACCGGTTGTGGCTTAATCAGAGTCAAGCCCATGAAATTGGACCTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_2 TPR_8

Protein Analysis

256

Amino Acids

28.27

Weight (kDa)

9.76

Isoelectric Point (pI)

52.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65520
fragaria_vesca	FvH4_1g19520 FvH4_5g34561 FvH4_5g34561 FvH4_5g34561 FvH4_5g34561 FvH4_5g34561
malus_domestica	MD08G1200200.v1.1 MD15G1310800.v1.1 MD15G1387400.v1.1
prunus_persica	Prupe.1G533800_v2.0.a1 Prupe.6G203100_v2.0.a1
pyrus_communis	pycom01g06830 pycom08g17360 pycom15g34740
rosa_chinensis	RchiOBHm_Chr2g0111021 RchiOBHm_Chr7g0235251
rosa_laevigata	RLG00000017858
rosa_multiflora	Rmu_sc0003994.1_g000008 Rmu_sc0004637.1_g000006 Rmu_sc0004657.1_g000046 Rmu_sc0005947.1_g000017
rosa_roxburghii	Rroxscaffold_3G00226160 Rroxscaffold_4G00298550 Rroxscaffold_7G00215170
rosa_rugosa	Rorug02G0170600 Rorug07G0289300
rosa_samantha	Rh2AG222600 Rh2BG234700 Rh2CG226000 Rh2DG230500
rosa_wichuraiana	Rw2G017200 Rw7G036900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	106
AccBSI	CCGCTC	2 cut(s)	500, 670
AccII	CGCG	4 cut(s)	405, 413, 431, 464
AclWI	GGATC	3 cut(s)	237, 250, 261
AcoI	YGGCCR	1 cut(s)	397
AcuI	CTGAAG	2 cut(s)	71, 527
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	3 cut(s)	319, 355, 562
AgeI	ACCGGT	1 cut(s)	720
AjnI	CCWGG	2 cut(s)	378, 555
AluBI	AGCT	5 cut(s)	122, 250, 505, 511, 653
AluI	AGCT	5 cut(s)	122, 250, 505, 511, 653
Alw26I	GTCTC	1 cut(s)	345
AlwI	GGATC	3 cut(s)	237, 250, 261
AlwNI	CAGNNNCTG	1 cut(s)	253
Ama87I	CYCGRG	3 cut(s)	258, 348, 355
AoxI	GGCC	7 cut(s)	19, 321, 358, 375, 397, 672, 702
ApaI	GGGCCC	1 cut(s)	362
ApeKI	GCWGC	2 cut(s)	98, 112
AsiGI	ACCGGT	1 cut(s)	720
AspLEI	GCGC	2 cut(s)	407, 487
AsuC2I	CCSGG	3 cut(s)	356, 357, 706
AsuHPI	GGTGA	7 cut(s)	30, 133, 175, 502, 529, 596, 602
AvaI	CYCGRG	3 cut(s)	258, 348, 355
AvaII	GGWCC	4 cut(s)	553, 693, 718, 758
BaeGI	GKGCMC	1 cut(s)	362
BamHI	GGATCC	1 cut(s)	242
BanII	GRGCYC	2 cut(s)	265, 362
BbvI	GCAGC	2 cut(s)	99, 110
BccI	CCATC	2 cut(s)	164, 676
BceAI	ACGGC	3 cut(s)	430, 542, 615
BciT130I	CCWGG	2 cut(s)	380, 557
BcnI	CCSGG	3 cut(s)	356, 357, 706
BcoDI	GTCTC	1 cut(s)	345
BfaI	CTAG	1 cut(s)	654
BfmI	CTRYAG	1 cut(s)	113
BfoI	RGCGCY	1 cut(s)	488
BfuAI	ACCTGC	1 cut(s)	106
BisI	GCNGC	6 cut(s)	99, 113, 408, 411, 432, 443
BlsI	GCNGC	6 cut(s)	100, 114, 409, 412, 433, 444
Bme1390I	CCNGG	5 cut(s)	356, 357, 380, 557, 706
Bme18I	GGWCC	4 cut(s)	553, 693, 718, 758
BmeT110I	CYCGRG	3 cut(s)	258, 348, 355
BmiI	GGNNCC	3 cut(s)	244, 360, 694
BmrFI	CCNGG	5 cut(s)	356, 357, 380, 557, 706
BmrI	ACTGGG	1 cut(s)	280
BmuI	ACTGGG	1 cut(s)	280
BplI	GAGNNNNNCTC	2 cut(s)	198, 230
BpuEI	CTTGAG	2 cut(s)	356, 697
BpuMI	CCSGG	3 cut(s)	356, 357, 706
BsaI	GGTCTC	1 cut(s)	345
BsaJI	CCNNGG	4 cut(s)	318, 355, 378, 394
BsaWI	WCCGGW	1 cut(s)	720
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	3 cut(s)	319, 355, 562
Bse118I	RCCGGY	1 cut(s)	720
Bse1I	ACTGG	1 cut(s)	286
BseBI	CCWGG	2 cut(s)	380, 557
BseDI	CCNNGG	4 cut(s)	318, 355, 378, 394
BseGI	GGATG	4 cut(s)	129, 156, 366, 687
BseLI	CCNNNNNNNGG	3 cut(s)	319, 355, 562
BseMII	CTCAG	1 cut(s)	566
BseNI	ACTGG	1 cut(s)	286
BseRI	GAGGAG	1 cut(s)	383
BseSI	GKGCMC	1 cut(s)	362
BseXI	GCAGC	2 cut(s)	99, 110
BseYI	CCCAGC	1 cut(s)	246
Bsh1236I	CGCG	4 cut(s)	405, 413, 431, 464
BshFI	GGCC	7 cut(s)	21, 323, 360, 377, 399, 674, 704
BshTI	ACCGGT	1 cut(s)	720
BsiHKCI	CYCGRG	3 cut(s)	258, 348, 355
BsiSI	CCGG	3 cut(s)	356, 706, 721
BslFI	GGGAC	1 cut(s)	274
BslI	CCNNNNNNNGG	3 cut(s)	319, 355, 562
BsmAI	GTCTC	1 cut(s)	345
BsmFI	GGGAC	1 cut(s)	274
BsnI	GGCC	7 cut(s)	21, 323, 360, 377, 399, 674, 704
Bso31I	GGTCTC	1 cut(s)	345
BsoBI	CYCGRG	3 cut(s)	258, 348, 355
Bsp120I	GGGCCC	1 cut(s)	358
Bsp1286I	GDGCHC	2 cut(s)	265, 362
Bsp143I	GATC	5 cut(s)	242, 266, 327, 388, 419
BspANI	GGCC	7 cut(s)	21, 323, 360, 377, 399, 674, 704
BspCNI	CTCAG	1 cut(s)	567
BspFNI	CGCG	4 cut(s)	405, 413, 431, 464
BspLI	GGNNCC	3 cut(s)	244, 360, 694
BspMAI	CTGCAG	1 cut(s)	117
BspMI	ACCTGC	1 cut(s)	106
BspPI	GGATC	3 cut(s)	237, 250, 261
BspQI	GCTCTTC	1 cut(s)	129
BspTNI	GGTCTC	1 cut(s)	345
BsrBI	CCGCTC	2 cut(s)	500, 670
BsrFI	RCCGGY	1 cut(s)	720
BsrI	ACTGG	1 cut(s)	286
BssAI	RCCGGY	1 cut(s)	720
BssECI	CCNNGG	4 cut(s)	318, 355, 378, 394
BssMI	GATC	5 cut(s)	242, 266, 327, 388, 419
Bst2UI	CCWGG	2 cut(s)	380, 557
Bst4CI	ACNGT	1 cut(s)	64
Bst6I	CTCTTC	2 cut(s)	129, 488
BstC8I	GCNNGC	3 cut(s)	362, 513, 672
BstDEI	CTNAG	1 cut(s)	575
BstENI	CCTNNNNNAGG	2 cut(s)	317, 560
BstF5I	GGATG	4 cut(s)	129, 156, 366, 687
BstFNI	CGCG	4 cut(s)	405, 413, 431, 464
BstH2I	RGCGCY	1 cut(s)	488
BstHHI	GCGC	2 cut(s)	407, 487
BstKTI	GATC	5 cut(s)	245, 269, 330, 391, 422
BstMAI	GTCTC	1 cut(s)	345
BstMBI	GATC	5 cut(s)	242, 266, 327, 388, 419
BstMWI	GCNNNNNNNGC	4 cut(s)	269, 308, 329, 659
BstNI	CCWGG	2 cut(s)	380, 557
BstSCI	CCNGG	5 cut(s)	354, 355, 378, 555, 704
BstSFI	CTRYAG	1 cut(s)	113
BstSLI	GKGCMC	1 cut(s)	362
BstUI	CGCG	4 cut(s)	405, 413, 431, 464
BstV1I	GCAGC	2 cut(s)	99, 110
BstX2I	RGATCY	1 cut(s)	242
BstXI	CCANNNNNNTGG	1 cut(s)	755
BstYI	RGATCY	1 cut(s)	242
BsuRI	GGCC	7 cut(s)	21, 323, 360, 377, 399, 674, 704
BtsCI	GGATG	4 cut(s)	129, 156, 366, 687
BtsIMutI	CAGTG	1 cut(s)	626
BveI	ACCTGC	1 cut(s)	106
Cac8I	GCNNGC	3 cut(s)	362, 513, 672
CaiI	CAGNNNCTG	1 cut(s)	253
CfoI	GCGC	2 cut(s)	407, 487
Cfr10I	RCCGGY	1 cut(s)	720
Cfr9I	CCCGGG	1 cut(s)	355
CseI	GACGC	1 cut(s)	437
CsiI	ACCWGGT	1 cut(s)	555
Csp6I	GTAC	1 cut(s)	7
CspAI	ACCGGT	1 cut(s)	720
CviAII	CATG	1 cut(s)	749
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	1 cut(s)	575
DpnI	GATC	5 cut(s)	244, 268, 329, 390, 421
DpnII	GATC	5 cut(s)	242, 266, 327, 388, 419
EaeI	YGGCCR	1 cut(s)	397
Eam1104I	CTCTTC	2 cut(s)	129, 488
EarI	CTCTTC	2 cut(s)	129, 488
EciI	GGCGGA	1 cut(s)	259
Eco24I	GRGCYC	2 cut(s)	265, 362
Eco31I	GGTCTC	1 cut(s)	345
Eco47I	GGWCC	4 cut(s)	553, 693, 718, 758
Eco57I	CTGAAG	2 cut(s)	71, 527
Eco88I	CYCGRG	3 cut(s)	258, 348, 355
EcoNI	CCTNNNNNAGG	2 cut(s)	317, 560
EcoO109I	RGGNCCY	3 cut(s)	20, 376, 553
EcoRII	CCWGG	2 cut(s)	378, 555
EcoT38I	GRGCYC	2 cut(s)	265, 362
FaeI	CATG	1 cut(s)	752
FaiI	YATR	4 cut(s)	57, 146, 641, 750
FaqI	GGGAC	1 cut(s)	274
FatI	CATG	1 cut(s)	748
FauI	CCCGC	4 cut(s)	233, 282, 369, 663
Fnu4HI	GCNGC	6 cut(s)	99, 113, 408, 411, 432, 443
FokI	GGATG	4 cut(s)	116, 143, 353, 694
FriOI	GRGCYC	2 cut(s)	265, 362
Fsp4HI	GCNGC	6 cut(s)	99, 113, 408, 411, 432, 443
FspBI	CTAG	1 cut(s)	654
GlaI	GCGC	2 cut(s)	406, 486
GluI	GCNGC	6 cut(s)	99, 113, 408, 411, 432, 443
GsaI	CCCAGC	1 cut(s)	250
HaeII	RGCGCY	1 cut(s)	488
HaeIII	GGCC	7 cut(s)	21, 323, 360, 377, 399, 674, 704
HapII	CCGG	3 cut(s)	356, 706, 721
HgaI	GACGC	1 cut(s)	437
HhaI	GCGC	2 cut(s)	407, 487
Hin1II	CATG	1 cut(s)	752
Hin6I	GCGC	2 cut(s)	405, 485
HinP1I	GCGC	2 cut(s)	405, 485
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HinfI	GANTC	3 cut(s)	539, 686, 739
HpaII	CCGG	3 cut(s)	356, 706, 721
HphI	GGTGA	7 cut(s)	30, 133, 175, 502, 529, 596, 602
Hpy166II	GTNNAC	2 cut(s)	67, 538
Hpy188I	TCNGA	4 cut(s)	90, 194, 242, 738
Hpy188III	TCNNGA	2 cut(s)	253, 386
Hpy8I	GTNNAC	2 cut(s)	67, 538
Hpy99I	CGWCG	1 cut(s)	601
HpyAV	CCTTC	2 cut(s)	92, 525
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4V	TGCA	1 cut(s)	115
HpyF10VI	GCNNNNNNNGC	4 cut(s)	269, 308, 329, 659
HpyF3I	CTNAG	1 cut(s)	575
Hsp92II	CATG	1 cut(s)	752
HspAI	GCGC	2 cut(s)	405, 485
Kzo9I	GATC	5 cut(s)	242, 266, 327, 388, 419
LguI	GCTCTTC	1 cut(s)	129
LmnI	GCTCC	3 cut(s)	255, 472, 502
Lsp1109I	GCAGC	2 cut(s)	99, 110
MabI	ACCWGGT	1 cut(s)	555
MaeI	CTAG	1 cut(s)	654
MaeIII	GTNAC	2 cut(s)	456, 623
MalI	GATC	5 cut(s)	244, 268, 329, 390, 421
MbiI	CCGCTC	2 cut(s)	500, 670
MboI	GATC	5 cut(s)	242, 266, 327, 388, 419
MboII	GAAGA	4 cut(s)	77, 116, 505, 646
MflI	RGATCY	1 cut(s)	242
MhlI	GDGCHC	2 cut(s)	265, 362
MluCI	AATT	1 cut(s)	753
MlyI	GAGTC	2 cut(s)	533, 748
MseI	TTAA	1 cut(s)	732
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	3 cut(s)	356, 706, 721
MspR9I	CCNGG	5 cut(s)	356, 357, 380, 557, 706
MvaI	CCWGG	2 cut(s)	380, 557
MvnI	CGCG	4 cut(s)	405, 413, 431, 464
MwoI	GCNNNNNNNGC	4 cut(s)	269, 308, 329, 659
NciI	CCSGG	3 cut(s)	356, 357, 706
NdeII	GATC	5 cut(s)	242, 266, 327, 388, 419
NlaIII	CATG	1 cut(s)	752
NlaIV	GGNNCC	3 cut(s)	244, 360, 694
NmeAIII	GCCGAG	3 cut(s)	349, 375, 521
PciSI	GCTCTTC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	686
PflFI	GACNNNGTC	1 cut(s)	286
PinAI	ACCGGT	1 cut(s)	720
PkrI	GCNGC	6 cut(s)	100, 114, 409, 412, 433, 444
PleI	GAGTC	2 cut(s)	533, 747
PpsI	GAGTC	2 cut(s)	533, 747
PpuMI	RGGWCCY	1 cut(s)	553
Psp5II	RGGWCCY	1 cut(s)	553
Psp6I	CCWGG	2 cut(s)	378, 555
PspFI	CCCAGC	1 cut(s)	246
PspGI	CCWGG	2 cut(s)	378, 555
PspN4I	GGNNCC	3 cut(s)	244, 360, 694
PspOMI	GGGCCC	1 cut(s)	358
PspPPI	RGGWCCY	1 cut(s)	553
PstI	CTGCAG	1 cut(s)	117
PstNI	CAGNNNCTG	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	242
PsyI	GACNNNGTC	1 cut(s)	286
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SapI	GCTCTTC	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	732
SatI	GCNGC	6 cut(s)	99, 113, 408, 411, 432, 443
Sau3AI	GATC	5 cut(s)	242, 266, 327, 388, 419
SchI	GAGTC	2 cut(s)	533, 748
ScrFI	CCNGG	5 cut(s)	356, 357, 380, 557, 706
SduI	GDGCHC	2 cut(s)	265, 362
SexAI	ACCWGGT	1 cut(s)	555
SfcI	CTRYAG	1 cut(s)	113
SinI	GGWCC	4 cut(s)	553, 693, 718, 758
SmaI	CCCGGG	1 cut(s)	357
SmlI	CTYRAG	2 cut(s)	371, 676
SmoI	CTYRAG	2 cut(s)	371, 676
Sse9I	AATT	1 cut(s)	753
SspMI	CTAG	1 cut(s)	654
StyD4I	CCNGG	5 cut(s)	354, 355, 378, 555, 704
TaaI	ACNGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	666
TasI	AATT	1 cut(s)	753
TatI	WGTACW	1 cut(s)	6
TauI	GCSGC	4 cut(s)	410, 413, 434, 445
TfiI	GAWTC	1 cut(s)	686
Tru1I	TTAA	1 cut(s)	732
Tru9I	TTAA	1 cut(s)	732
TscAI	CASTG	1 cut(s)	626
TseI	GCWGC	2 cut(s)	98, 112
TspDTI	ATGAA	2 cut(s)	17, 765
TspGWI	ACGGA	2 cut(s)	61, 685
TspMI	CCCGGG	1 cut(s)	355
TspRI	CASTG	1 cut(s)	626
Tth111I	GACNNNGTC	1 cut(s)	286
VpaK11BI	GGWCC	4 cut(s)	553, 693, 718, 758
XagI	CCTNNNNNAGG	2 cut(s)	317, 560
XmaI	CCCGGG	1 cut(s)	355
XspI	CTAG	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.