RchiOBHm_Chr2g0111021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004173
Physical Location & Seq
Forward (+)
22648877 .. 22649841
965 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48463

Sequence Viewer

Length: 660 bp
ATGGCGGCAGAGGTGGTGCTGCAGGTGGCCCTTCTGATCCTAACCCTTGCCATATTCTTCGCCATACACAAACTCTCCAAGCAAGCCTTAACCAAGCTCCGAACCAACAACCGAGCTACCCTCCAAGCCACCCGACACTTCGTCCTCGGATCCCAGCTCCTGACCCGAGCCCGATCCACTCCCCACAAGACCCAGTCCCACTCCCACGCCAAATCCGCTTTAACCGAGGCCGAGAAGGCCCTCTCTCTCTCGCCCCGAGACCCGGGCCCGCACATCCTCAAAGCCCTAGCTCTGGATCTCTTGGGCCACCGGACCTCCGCCCTGCGATCGCTCGACGCCGCCTTGTCGCCGCCGTGCGTGAAGTCACTCGCGGATAGGGAGCGTGGGGAGGCGTTGGTGAAGAGGGCGGAGCTGAAGCTCGCGCTGAACCGGCGGCGCCGGGTCGACTCGGCGGTCGAGGATCTGGTTGAAGCGGTTGGGCTGAGTTCGGGTGAGGATGATACGACGGCGTTTTGTTTGTTGGGTCAGTGTTACGAGCGGAAGGGGATGAGGGACGAAGCTAGGGAGGCCTTCGAGCGGGCCTTGACGATGGATTCTGGGTCGGCATTGGCCCGTCAAGGCTTGGACCGGTTGCGGCTTAATCAAAGTCCAAGCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

219

Amino Acids

23.93

Weight (kDa)

9.88

Isoelectric Point (pI)

48.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_2 PF07719 170 - 198 7e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 13
AasI GACNNNNNNGTC 1 cut(s) 452
Acc36I ACCTGC 1 cut(s) 13
AccB1I GGYRCC 1 cut(s) 435
AccBSI CCGCTC 2 cut(s) 538, 577
AccI GTMKAC 1 cut(s) 444
AccII CGCG 2 cut(s) 371, 422
AclWI GGATC 6 cut(s) 31, 144, 157, 168, 303, 468
AcuI CTGAAG 1 cut(s) 434
AcyI GRCGYC 2 cut(s) 336, 436
AfiI CCNNNNNNNGG 3 cut(s) 262, 292, 576
AgeI ACCGGT 1 cut(s) 627
AgsI TTSAA 1 cut(s) 470
AhdI GACNNNNNGTC 1 cut(s) 140
AluBI AGCT 7 cut(s) 97, 116, 157, 290, 412, 418, 560
AluI AGCT 7 cut(s) 97, 116, 157, 290, 412, 418, 560
Alw26I GTCTC 1 cut(s) 252
AlwI GGATC 6 cut(s) 31, 144, 157, 168, 303, 468
AlwNI CAGNNNCTG 1 cut(s) 160
Ama87I CYCGRG 3 cut(s) 165, 255, 262
AoxI GGCC 8 cut(s) 27, 228, 237, 265, 304, 567, 579, 609
ApaI GGGCCC 1 cut(s) 269
ApeKI GCWGC 1 cut(s) 19
AsiGI ACCGGT 1 cut(s) 627
AsiSI GCGATCGC 1 cut(s) 329
AspLEI GCGC 2 cut(s) 424, 438
AspS9I GGNCC 9 cut(s) 28, 238, 265, 266, 304, 312, 579, 610, 625
AsuC2I CCSGG 3 cut(s) 263, 264, 440
AsuHPI GGTGA 2 cut(s) 409, 503
AvaI CYCGRG 3 cut(s) 165, 255, 262
AvaII GGWCC 2 cut(s) 312, 625
BaeGI GKGCMC 1 cut(s) 269
BamHI GGATCC 1 cut(s) 149
BanI GGYRCC 1 cut(s) 435
BanII GRGCYC 2 cut(s) 172, 269
BbvI GCAGC 1 cut(s) 6
BccI CCATC 1 cut(s) 583
BceAI ACGGC 2 cut(s) 337, 522
BcnI CCSGG 3 cut(s) 263, 264, 440
BcoDI GTCTC 1 cut(s) 252
BfaI CTAG 2 cut(s) 287, 561
BfmI CTRYAG 1 cut(s) 20
BfoI RGCGCY 1 cut(s) 439
BfuAI ACCTGC 1 cut(s) 13
BglI GCCNNNNNGGC 1 cut(s) 236
BisI GCNGC 6 cut(s) 6, 20, 339, 350, 434, 635
BlsI GCNGC 6 cut(s) 7, 21, 340, 351, 435, 636
Bme1390I CCNGG 3 cut(s) 263, 264, 440
Bme18I GGWCC 2 cut(s) 312, 625
BmeRI GACNNNNNGTC 1 cut(s) 140
BmeT110I CYCGRG 3 cut(s) 165, 255, 262
BmgT120I GGNCC 9 cut(s) 28, 238, 265, 266, 304, 312, 579, 610, 625
BmiI GGNNCC 3 cut(s) 151, 267, 437
BmrFI CCNGG 3 cut(s) 263, 264, 440
BmrI ACTGGG 1 cut(s) 187
BmuI ACTGGG 1 cut(s) 187
BplI GAGNNNNNCTC 2 cut(s) 105, 137
BpuMI CCSGG 3 cut(s) 263, 264, 440
BsaHI GRCGYC 2 cut(s) 336, 436
BsaI GGTCTC 1 cut(s) 252
BsaJI CCNNGG 3 cut(s) 145, 225, 262
BsaWI WCCGGW 2 cut(s) 309, 627
BsaXI ACNNNNNCTCC 4 cut(s) 59, 89, 299, 329
Bsc4I CCNNNNNNNGG 3 cut(s) 262, 292, 576
Bse118I RCCGGY 2 cut(s) 429, 627
Bse1I ACTGG 1 cut(s) 193
BseDI CCNNGG 3 cut(s) 145, 225, 262
BseGI GGATG 3 cut(s) 273, 502, 552
BseLI CCNNNNNNNGG 3 cut(s) 262, 292, 576
BseMII CTCAG 1 cut(s) 473
BseNI ACTGG 1 cut(s) 193
BseSI GKGCMC 1 cut(s) 269
BseXI GCAGC 1 cut(s) 6
BseYI CCCAGC 1 cut(s) 153
Bsh1236I CGCG 2 cut(s) 371, 422
Bsh1285I CGRYCG 2 cut(s) 329, 456
BshFI GGCC 8 cut(s) 29, 230, 239, 267, 306, 569, 581, 611
BshNI GGYRCC 1 cut(s) 435
BshTI ACCGGT 1 cut(s) 627
BsiEI CGRYCG 2 cut(s) 329, 456
BsiHKCI CYCGRG 3 cut(s) 165, 255, 262
BsiSI CCGG 5 cut(s) 263, 310, 430, 439, 628
BslFI GGGAC 2 cut(s) 181, 566
BslI CCNNNNNNNGG 3 cut(s) 262, 292, 576
BsmAI GTCTC 1 cut(s) 252
BsmFI GGGAC 2 cut(s) 181, 566
BsnI GGCC 8 cut(s) 29, 230, 239, 267, 306, 569, 581, 611
Bso31I GGTCTC 1 cut(s) 252
BsoBI CYCGRG 3 cut(s) 165, 255, 262
Bsp120I GGGCCC 1 cut(s) 265
Bsp1286I GDGCHC 2 cut(s) 172, 269
Bsp143I GATC 6 cut(s) 36, 149, 173, 295, 326, 460
BspANI GGCC 8 cut(s) 29, 230, 239, 267, 306, 569, 581, 611
BspCNI CTCAG 1 cut(s) 474
BspFNI CGCG 2 cut(s) 371, 422
BspLI GGNNCC 3 cut(s) 151, 267, 437
BspMAI CTGCAG 1 cut(s) 24
BspMI ACCTGC 1 cut(s) 13
BspPI GGATC 6 cut(s) 31, 144, 157, 168, 303, 468
BspT107I GGYRCC 1 cut(s) 435
BspTNI GGTCTC 1 cut(s) 252
BsrBI CCGCTC 2 cut(s) 538, 577
BsrFI RCCGGY 2 cut(s) 429, 627
BsrI ACTGG 1 cut(s) 193
BssAI RCCGGY 2 cut(s) 429, 627
BssECI CCNNGG 3 cut(s) 145, 225, 262
BssMI GATC 6 cut(s) 36, 149, 173, 295, 326, 460
BssNI GRCGYC 2 cut(s) 336, 436
Bst6I CTCTTC 1 cut(s) 395
BstACI GRCGYC 2 cut(s) 336, 436
BstC8I GCNNGC 4 cut(s) 84, 269, 420, 579
BstDEI CTNAG 1 cut(s) 482
BstF5I GGATG 3 cut(s) 273, 502, 552
BstFNI CGCG 2 cut(s) 371, 422
BstH2I RGCGCY 1 cut(s) 439
BstHHI GCGC 2 cut(s) 424, 438
BstKTI GATC 6 cut(s) 39, 152, 176, 298, 329, 463
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 6 cut(s) 36, 149, 173, 295, 326, 460
BstMCI CGRYCG 2 cut(s) 329, 456
BstMWI GCNNNNNNNGC 4 cut(s) 215, 236, 430, 566
BstSCI CCNGG 3 cut(s) 261, 262, 438
BstSFI CTRYAG 1 cut(s) 20
BstSLI GKGCMC 1 cut(s) 269
BstUI CGCG 2 cut(s) 371, 422
BstV1I GCAGC 1 cut(s) 6
BstX2I RGATCY 3 cut(s) 149, 295, 460
BstYI RGATCY 3 cut(s) 149, 295, 460
BsuRI GGCC 8 cut(s) 29, 230, 239, 267, 306, 569, 581, 611
BtsCI GGATG 3 cut(s) 273, 502, 552
BtsIMutI CAGTG 1 cut(s) 533
BveI ACCTGC 1 cut(s) 13
Cac8I GCNNGC 4 cut(s) 84, 269, 420, 579
CaiI CAGNNNCTG 1 cut(s) 160
CfoI GCGC 2 cut(s) 424, 438
Cfr10I RCCGGY 2 cut(s) 429, 627
Cfr13I GGNCC 9 cut(s) 28, 238, 265, 266, 304, 312, 579, 610, 625
Cfr9I CCCGGG 1 cut(s) 262
CseI GACGC 1 cut(s) 344
CspAI ACCGGT 1 cut(s) 627
CviAII CATG 1 cut(s) 657
DdeI CTNAG 1 cut(s) 482
DinI GGCGCC 1 cut(s) 437
DpnI GATC 6 cut(s) 38, 151, 175, 297, 328, 462
DpnII GATC 6 cut(s) 36, 149, 173, 295, 326, 460
DrdI GACNNNNNNGTC 1 cut(s) 452
DriI GACNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 452
Eam1104I CTCTTC 1 cut(s) 395
Eam1105I GACNNNNNGTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 395
EciI GGCGGA 2 cut(s) 307, 422
Eco147I AGGCCT 1 cut(s) 569
Eco24I GRGCYC 2 cut(s) 172, 269
Eco31I GGTCTC 1 cut(s) 252
Eco47I GGWCC 2 cut(s) 312, 625
Eco57I CTGAAG 1 cut(s) 434
Eco88I CYCGRG 3 cut(s) 165, 255, 262
EcoO109I RGGNCCY 1 cut(s) 238
EcoT38I GRGCYC 2 cut(s) 172, 269
EgeI GGCGCC 1 cut(s) 437
EheI GGCGCC 1 cut(s) 437
FaeI CATG 1 cut(s) 660
FaiI YATR 3 cut(s) 53, 65, 658
FalI AAGNNNNNCTT 2 cut(s) 71, 103
FaqI GGGAC 2 cut(s) 181, 566
FatI CATG 1 cut(s) 656
FauI CCCGC 2 cut(s) 276, 570
FblI GTMKAC 1 cut(s) 444
Fnu4HI GCNGC 6 cut(s) 6, 20, 339, 350, 434, 635
FokI GGATG 3 cut(s) 260, 509, 559
FriOI GRGCYC 2 cut(s) 172, 269
Fsp4HI GCNGC 6 cut(s) 6, 20, 339, 350, 434, 635
FspBI CTAG 2 cut(s) 287, 561
GlaI GCGC 2 cut(s) 423, 437
GluI GCNGC 6 cut(s) 6, 20, 339, 350, 434, 635
GsaI CCCAGC 1 cut(s) 157
HaeII RGCGCY 1 cut(s) 439
HaeIII GGCC 8 cut(s) 29, 230, 239, 267, 306, 569, 581, 611
HapII CCGG 5 cut(s) 263, 310, 430, 439, 628
HgaI GACGC 1 cut(s) 344
HhaI GCGC 2 cut(s) 424, 438
Hin1I GRCGYC 2 cut(s) 336, 436
Hin1II CATG 1 cut(s) 660
Hin6I GCGC 2 cut(s) 422, 436
HinP1I GCGC 2 cut(s) 422, 436
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HinfI GANTC 2 cut(s) 446, 593
HpaII CCGG 5 cut(s) 263, 310, 430, 439, 628
HphI GGTGA 2 cut(s) 409, 503
Hpy166II GTNNAC 1 cut(s) 445
Hpy188I TCNGA 3 cut(s) 36, 101, 149
Hpy188III TCNNGA 2 cut(s) 160, 293
Hpy8I GTNNAC 1 cut(s) 445
Hpy99I CGWCG 2 cut(s) 338, 508
HpyAV CCTTC 4 cut(s) 41, 229, 535, 580
HpyCH4V TGCA 1 cut(s) 22
HpyF10VI GCNNNNNNNGC 4 cut(s) 215, 236, 430, 566
HpyF3I CTNAG 1 cut(s) 482
Hsp92I GRCGYC 2 cut(s) 336, 436
Hsp92II CATG 1 cut(s) 660
HspAI GCGC 2 cut(s) 422, 436
KasI GGCGCC 1 cut(s) 435
Kzo9I GATC 6 cut(s) 36, 149, 173, 295, 326, 460
LmnI GCTCC 4 cut(s) 102, 162, 379, 409
Lsp1109I GCAGC 1 cut(s) 6
MaeI CTAG 2 cut(s) 287, 561
MaeIII GTNAC 2 cut(s) 363, 530
MalI GATC 6 cut(s) 38, 151, 175, 297, 328, 462
MbiI CCGCTC 2 cut(s) 538, 577
MboI GATC 6 cut(s) 36, 149, 173, 295, 326, 460
MboII GAAGA 2 cut(s) 49, 412
MflI RGATCY 3 cut(s) 149, 295, 460
MhlI GDGCHC 2 cut(s) 172, 269
Mly113I GGCGCC 1 cut(s) 436
MlyI GAGTC 1 cut(s) 440
MseI TTAA 3 cut(s) 89, 221, 639
MspI CCGG 5 cut(s) 263, 310, 430, 439, 628
MspR9I CCNGG 3 cut(s) 263, 264, 440
MvnI CGCG 2 cut(s) 371, 422
MwoI GCNNNNNNNGC 4 cut(s) 215, 236, 430, 566
NarI GGCGCC 1 cut(s) 436
NciI CCSGG 3 cut(s) 263, 264, 440
NdeII GATC 6 cut(s) 36, 149, 173, 295, 326, 460
NlaIII CATG 1 cut(s) 660
NlaIV GGNNCC 3 cut(s) 151, 267, 437
NmeAIII GCCGAG 2 cut(s) 256, 428
NmuCI GTSAC 1 cut(s) 363
PaqCI CACCTGC 1 cut(s) 13
PceI AGGCCT 1 cut(s) 569
PfeI GAWTC 1 cut(s) 593
PflFI GACNNNGTC 1 cut(s) 193
PinAI ACCGGT 1 cut(s) 627
PkrI GCNGC 6 cut(s) 7, 21, 340, 351, 435, 636
Ple19I CGATCG 1 cut(s) 329
PleI GAGTC 1 cut(s) 440
PluTI GGCGCC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 440
PspFI CCCAGC 1 cut(s) 153
PspN4I GGNNCC 3 cut(s) 151, 267, 437
PspOMI GGGCCC 1 cut(s) 265
PspPI GGNCC 9 cut(s) 28, 238, 265, 266, 304, 312, 579, 610, 625
PstI CTGCAG 1 cut(s) 24
PstNI CAGNNNCTG 1 cut(s) 160
PsuI RGATCY 3 cut(s) 149, 295, 460
PsyI GACNNNGTC 1 cut(s) 193
PvuI CGATCG 1 cut(s) 329
RgaI GCGATCGC 1 cut(s) 329
SalI GTCGAC 1 cut(s) 443
SaqAI TTAA 3 cut(s) 89, 221, 639
SatI GCNGC 6 cut(s) 6, 20, 339, 350, 434, 635
Sau3AI GATC 6 cut(s) 36, 149, 173, 295, 326, 460
Sau96I GGNCC 9 cut(s) 28, 238, 265, 266, 304, 312, 579, 610, 625
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 3 cut(s) 263, 264, 440
SduI GDGCHC 2 cut(s) 172, 269
SfaAI GCGATCGC 1 cut(s) 329
SfcI CTRYAG 1 cut(s) 20
SfiI GGCCNNNNNGGCC 1 cut(s) 236
SfoI GGCGCC 1 cut(s) 437
SgfI GCGATCGC 1 cut(s) 329
SinI GGWCC 2 cut(s) 312, 625
SmaI CCCGGG 1 cut(s) 264
SseBI AGGCCT 1 cut(s) 569
SspDI GGCGCC 1 cut(s) 435
SspMI CTAG 2 cut(s) 287, 561
StuI AGGCCT 1 cut(s) 569
StyD4I CCNGG 3 cut(s) 261, 262, 438
TaqI TCGA 4 cut(s) 333, 444, 456, 573
TauI GCSGC 5 cut(s) 8, 341, 352, 436, 637
TfiI GAWTC 1 cut(s) 593
Tru1I TTAA 3 cut(s) 89, 221, 639
Tru9I TTAA 3 cut(s) 89, 221, 639
TscAI CASTG 1 cut(s) 533
TseFI GTSAC 1 cut(s) 363
TseI GCWGC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 363
TspMI CCCGGG 1 cut(s) 262
TspRI CASTG 1 cut(s) 533
Tth111I GACNNNGTC 1 cut(s) 193
VpaK11BI GGWCC 2 cut(s) 312, 625
XmaI CCCGGG 1 cut(s) 262
XmiI GTMKAC 1 cut(s) 444
XspI CTAG 2 cut(s) 287, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.