Prupe.1G533800_v2.0.a1

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0004173
Physical Location & Seq
Reverse (-)
43618099 .. 43618755
657 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G533800.1

Sequence Viewer

Length: 657 bp
ATGATGTCGCAGATGGTTAAAGACTTGTTTCTCCAAGCAGGCCTCATCCTCGTCGTCGTCGTCGCCTTTCTCACCATCCACAACATCCCCCAGAAGCTCCTCGCCAATCTCCGCTTCCGCTTCCGCAACAAACCCAAAGCGCAAGCCAAGCGCCACTTCGTCCTCGGCGCCCAGCTCCTCGCCCAAGCCCGATCCGCCGCCTCTCCCTCCTCCGCTTCCTCACTCTCCAAGCAAGCCCTCGACGAAGCCGAAAAGGCCATCTCCCTCGACCCCAAGGACGCCGCCGCCCACATCCTCAAAGCCCTAGCCCTCGATTCTCAGGGCTACAAGACCTCCGCCCTCGACGCCATCGACGTCGCTCTCTCCCCTTTCGCCGCCAAGAGCCTCACCGAGGAGGAGCGAGGCGATGCGCTCGTCAAGAGGGCGGAGATCAGGTTGTCGATGAACCGACGCGGCCAGGTTGACTCGGTGATCGCCGATTTGATTCGGGCTGTGGAGCTGAGCCCGGAGAATGTGAAGGCGTTTTGTACGCTCGGAGAGTGCTACGAGGGGAAGAAGATGACGGAAGAGGCCAGGAAGGCCTACGAGGCGGCGCTGAAGGTCCAGCCCAGACTGAAAGTCGCGAGGGATGCTCTCGACCGTCTCGGTTCGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_2 TPR_8

Protein Analysis

219

Amino Acids

23.76

Weight (kDa)

9.54

Isoelectric Point (pI)

52.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 357
AccB1I GGYRCC 1 cut(s) 167
AccII CGCG 2 cut(s) 453, 623
AclWI GGATC 1 cut(s) 186
AcoI YGGCCR 1 cut(s) 454
AcuI CTGAAG 1 cut(s) 617
AcyI GRCGYC 4 cut(s) 168, 279, 345, 354
AfaI GTAC 1 cut(s) 529
AfiI CCNNNNNNNGG 1 cut(s) 391
AhdI GACNNNNNGTC 1 cut(s) 617
AjnI CCWGG 2 cut(s) 456, 572
AjuI GAANNNNNNNTTGG 4 cut(s) 98, 130, 140, 172
AluBI AGCT 3 cut(s) 97, 175, 499
AluI AGCT 3 cut(s) 97, 175, 499
Alw26I GTCTC 1 cut(s) 647
AlwI GGATC 1 cut(s) 186
AoxI GGCC 5 cut(s) 40, 255, 454, 570, 579
AspLEI GCGC 5 cut(s) 142, 153, 170, 412, 595
AspS9I GGNCC 1 cut(s) 601
AsuC2I CCSGG 1 cut(s) 506
AsuHPI GGTGA 3 cut(s) 64, 379, 481
AvaII GGWCC 1 cut(s) 601
BanI GGYRCC 1 cut(s) 167
BanII GRGCYC 1 cut(s) 506
BccI CCATC 4 cut(s) 7, 83, 266, 356
BciT130I CCWGG 2 cut(s) 458, 574
BcnI CCSGG 1 cut(s) 506
BcoDI GTCTC 1 cut(s) 647
BfaI CTAG 1 cut(s) 305
BfoI RGCGCY 3 cut(s) 154, 171, 596
BglI GCCNNNNNGGC 3 cut(s) 254, 578, 587
BisI GCNGC 6 cut(s) 198, 282, 285, 375, 454, 591
BlpI GCTNAGC 1 cut(s) 500
BlsI GCNGC 6 cut(s) 199, 283, 286, 376, 455, 592
Bme1390I CCNGG 3 cut(s) 458, 506, 574
Bme18I GGWCC 1 cut(s) 601
BmeRI GACNNNNNGTC 1 cut(s) 617
BmgT120I GGNCC 1 cut(s) 601
BmiI GGNNCC 1 cut(s) 169
BmrFI CCNGG 3 cut(s) 458, 506, 574
BmsI GCATC 2 cut(s) 397, 619
BplI GAGNNNNNCTC 2 cut(s) 616, 648
Bpu1102I GCTNAGC 1 cut(s) 500
BpuMI CCSGG 1 cut(s) 506
BsaHI GRCGYC 4 cut(s) 168, 279, 345, 354
BsaJI CCNNGG 3 cut(s) 163, 273, 390
BsaXI ACNNNNNCTCC 4 cut(s) 317, 347, 419, 449
Bsc4I CCNNNNNNNGG 1 cut(s) 391
BseBI CCWGG 2 cut(s) 458, 574
BseDI CCNNGG 3 cut(s) 163, 273, 390
BseGI GGATG 5 cut(s) 45, 75, 84, 291, 634
BseLI CCNNNNNNNGG 1 cut(s) 391
BseMII CTCAG 2 cut(s) 332, 491
BseRI GAGGAG 5 cut(s) 89, 167, 199, 407, 410
BseYI CCCAGC 1 cut(s) 171
Bsh1236I CGCG 2 cut(s) 453, 623
Bsh1285I CGRYCG 1 cut(s) 640
BshFI GGCC 5 cut(s) 42, 257, 456, 572, 581
BshNI GGYRCC 1 cut(s) 167
BsiEI CGRYCG 1 cut(s) 640
BsiSI CCGG 1 cut(s) 506
BslI CCNNNNNNNGG 1 cut(s) 391
BsmAI GTCTC 1 cut(s) 647
BsmBI CGTCTC 1 cut(s) 647
BsnI GGCC 5 cut(s) 42, 257, 456, 572, 581
Bsp1286I GDGCHC 1 cut(s) 506
Bsp143I GATC 3 cut(s) 191, 429, 471
Bsp1720I GCTNAGC 1 cut(s) 500
Bsp68I TCGCGA 1 cut(s) 623
BspANI GGCC 5 cut(s) 42, 257, 456, 572, 581
BspCNI CTCAG 2 cut(s) 331, 492
BspFNI CGCG 2 cut(s) 453, 623
BspLI GGNNCC 1 cut(s) 169
BspPI GGATC 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 167
BssECI CCNNGG 3 cut(s) 163, 273, 390
BssMI GATC 3 cut(s) 191, 429, 471
BssNI GRCGYC 4 cut(s) 168, 279, 345, 354
BssT1I CCWWGG 1 cut(s) 273
Bst2UI CCWGG 2 cut(s) 458, 574
Bst4CI ACNGT 1 cut(s) 641
Bst6I CTCTTC 1 cut(s) 561
BstACI GRCGYC 4 cut(s) 168, 279, 345, 354
BstC8I GCNNGC 3 cut(s) 40, 144, 234
BstDEI CTNAG 2 cut(s) 318, 500
BstENI CCTNNNNNAGG 1 cut(s) 389
BstF5I GGATG 5 cut(s) 45, 75, 84, 291, 634
BstFNI CGCG 2 cut(s) 453, 623
BstH2I RGCGCY 3 cut(s) 154, 171, 596
BstHHI GCGC 5 cut(s) 142, 153, 170, 412, 595
BstKTI GATC 3 cut(s) 194, 432, 474
BstMAI GTCTC 1 cut(s) 647
BstMBI GATC 3 cut(s) 191, 429, 471
BstMCI CGRYCG 1 cut(s) 640
BstMWI GCNNNNNNNGC 7 cut(s) 148, 194, 254, 344, 578, 587, 629
BstNI CCWGG 2 cut(s) 458, 574
BstSCI CCNGG 3 cut(s) 456, 504, 572
BstUI CGCG 2 cut(s) 453, 623
BsuRI GGCC 5 cut(s) 42, 257, 456, 572, 581
BtgZI GCGATG 1 cut(s) 420
BtsCI GGATG 5 cut(s) 45, 75, 84, 291, 634
BtuMI TCGCGA 1 cut(s) 623
Cac8I GCNNGC 3 cut(s) 40, 144, 234
CfoI GCGC 5 cut(s) 142, 153, 170, 412, 595
Cfr13I GGNCC 1 cut(s) 601
CseI GACGC 3 cut(s) 287, 353, 459
Csp6I GTAC 1 cut(s) 528
CviQI GTAC 1 cut(s) 528
DdeI CTNAG 2 cut(s) 318, 500
DinI GGCGCC 1 cut(s) 169
DpnI GATC 3 cut(s) 193, 431, 473
DpnII GATC 3 cut(s) 191, 429, 471
DriI GACNNNNNGTC 1 cut(s) 617
EaeI YGGCCR 1 cut(s) 454
Eam1104I CTCTTC 1 cut(s) 561
Eam1105I GACNNNNNGTC 1 cut(s) 617
EarI CTCTTC 1 cut(s) 561
EciI GGCGGA 3 cut(s) 184, 325, 440
Eco130I CCWWGG 1 cut(s) 273
Eco147I AGGCCT 2 cut(s) 42, 581
Eco24I GRGCYC 1 cut(s) 506
Eco47I GGWCC 1 cut(s) 601
Eco57I CTGAAG 1 cut(s) 617
EcoNI CCTNNNNNAGG 1 cut(s) 389
EcoRII CCWGG 2 cut(s) 456, 572
EcoT14I CCWWGG 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 506
EgeI GGCGCC 1 cut(s) 169
EheI GGCGCC 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 273
Esp3I CGTCTC 1 cut(s) 647
FalI AAGNNNNNCTT 2 cut(s) 140, 172
Fnu4HI GCNGC 6 cut(s) 198, 282, 285, 375, 454, 591
FokI GGATG 5 cut(s) 32, 62, 71, 278, 641
FriOI GRGCYC 1 cut(s) 506
Fsp4HI GCNGC 6 cut(s) 198, 282, 285, 375, 454, 591
FspBI CTAG 1 cut(s) 305
GlaI GCGC 5 cut(s) 141, 152, 169, 411, 594
GluI GCNGC 6 cut(s) 198, 282, 285, 375, 454, 591
GsaI CCCAGC 1 cut(s) 175
HaeII RGCGCY 3 cut(s) 154, 171, 596
HaeIII GGCC 5 cut(s) 42, 257, 456, 572, 581
HapII CCGG 1 cut(s) 506
HgaI GACGC 3 cut(s) 287, 353, 459
HhaI GCGC 5 cut(s) 142, 153, 170, 412, 595
Hin1I GRCGYC 4 cut(s) 168, 279, 345, 354
Hin6I GCGC 5 cut(s) 140, 151, 168, 410, 593
HinP1I GCGC 5 cut(s) 140, 151, 168, 410, 593
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HinfI GANTC 3 cut(s) 314, 464, 484
HpaII CCGG 1 cut(s) 506
HphI GGTGA 3 cut(s) 64, 379, 481
Hpy166II GTNNAC 1 cut(s) 463
Hpy188I TCNGA 1 cut(s) 536
Hpy188III TCNNGA 3 cut(s) 418, 622, 635
Hpy8I GTNNAC 1 cut(s) 463
Hpy99I CGWCG 9 cut(s) 56, 59, 62, 65, 245, 347, 356, 359, 453
HpyAV CCTTC 3 cut(s) 511, 571, 592
HpyCH4III ACNGT 1 cut(s) 641
HpyCH4IV ACGT 1 cut(s) 354
HpyF10VI GCNNNNNNNGC 7 cut(s) 148, 194, 254, 344, 578, 587, 629
HpyF3I CTNAG 2 cut(s) 318, 500
HpySE526I ACGT 1 cut(s) 354
Hsp92I GRCGYC 4 cut(s) 168, 279, 345, 354
HspAI GCGC 5 cut(s) 140, 151, 168, 410, 593
KasI GGCGCC 1 cut(s) 167
Kzo9I GATC 3 cut(s) 191, 429, 471
LmnI GCTCC 4 cut(s) 102, 180, 397, 496
LweI GCATC 2 cut(s) 397, 619
MaeI CTAG 1 cut(s) 305
MaeII ACGT 1 cut(s) 354
MalI GATC 3 cut(s) 193, 431, 473
MboI GATC 3 cut(s) 191, 429, 471
MboII GAAGA 3 cut(s) 565, 568, 578
MhlI GDGCHC 1 cut(s) 506
Mly113I GGCGCC 1 cut(s) 168
MlyI GAGTC 1 cut(s) 458
MseI TTAA 1 cut(s) 18
MspI CCGG 1 cut(s) 506
MspR9I CCNGG 3 cut(s) 458, 506, 574
MvaI CCWGG 2 cut(s) 458, 574
MvnI CGCG 2 cut(s) 453, 623
MwoI GCNNNNNNNGC 7 cut(s) 148, 194, 254, 344, 578, 587, 629
NarI GGCGCC 1 cut(s) 168
NciI CCSGG 1 cut(s) 506
NdeII GATC 3 cut(s) 191, 429, 471
NlaIV GGNNCC 1 cut(s) 169
NmeAIII GCCGAG 1 cut(s) 144
NruI TCGCGA 1 cut(s) 623
PceI AGGCCT 2 cut(s) 42, 581
PcsI WCGNNNNNNNCGW 4 cut(s) 57, 246, 348, 351
PfeI GAWTC 2 cut(s) 314, 484
PkrI GCNGC 6 cut(s) 199, 283, 286, 376, 455, 592
PleI GAGTC 1 cut(s) 458
PluTI GGCGCC 1 cut(s) 171
PpsI GAGTC 1 cut(s) 458
Psp6I CCWGG 2 cut(s) 456, 572
PspFI CCCAGC 1 cut(s) 171
PspGI CCWGG 2 cut(s) 456, 572
PspN4I GGNNCC 1 cut(s) 169
PspPI GGNCC 1 cut(s) 601
RruI TCGCGA 1 cut(s) 623
RsaI GTAC 1 cut(s) 529
RsaNI GTAC 1 cut(s) 528
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 6 cut(s) 198, 282, 285, 375, 454, 591
Sau3AI GATC 3 cut(s) 191, 429, 471
Sau96I GGNCC 1 cut(s) 601
SchI GAGTC 1 cut(s) 458
ScrFI CCNGG 3 cut(s) 458, 506, 574
SduI GDGCHC 1 cut(s) 506
SetI ASST 8 cut(s) 99, 177, 335, 357, 437, 462, 501, 603
SfaNI GCATC 2 cut(s) 397, 619
SfiI GGCCNNNNNGGCC 1 cut(s) 578
SfoI GGCGCC 1 cut(s) 169
SinI GGWCC 1 cut(s) 601
SseBI AGGCCT 2 cut(s) 42, 581
SspDI GGCGCC 1 cut(s) 167
SspMI CTAG 1 cut(s) 305
StuI AGGCCT 2 cut(s) 42, 581
StyD4I CCNGG 3 cut(s) 456, 504, 572
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 1 cut(s) 641
TaiI ACGT 1 cut(s) 357
TaqI TCGA 8 cut(s) 240, 267, 312, 342, 351, 440, 636, 650
TauI GCSGC 6 cut(s) 200, 284, 287, 377, 456, 593
TfiI GAWTC 2 cut(s) 314, 484
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TspDTI ATGAA 1 cut(s) 458
TspGWI ACGGA 1 cut(s) 578
VpaK11BI GGWCC 1 cut(s) 601
XagI CCTNNNNNAGG 1 cut(s) 389
XspI CTAG 1 cut(s) 305
ZraI GACGTC 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.