Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004173

Physical Location & Seq

Genomic Coordinates Reverse (-)

21057159 .. 21058201

Gene Structure 1043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G203100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCGCCTGAGGTGGTGCTACAGCTCGGCCTTCTCATCCTAACCCTAGCAATGTTCTTCGCCATACACAAAATCTCCAGAAAGGCCCTAACCAAGCTCCGAACCAACAACCGAGCCAACCTCCAATCGACCCGCCACTTCGTCCAGGGGTCTCACCTTCTGACCCGAGCCCGATCCAATCCTCACAAAGCCCAATCGCAGGCCCATGCCAAAAACGCCTTAACGGAGGCGGAGAAGGCACTGGCTCTCTCCCCAAGAGACCCGGGCCCGCACATTCTCAAAGCCCTAGCTCTCGATCTCTTGGGGCACAAGACCTCCGCGCTGAAATCGTTCGACGTGGCTCTGTCGCCGCCGTGCGTGAAGTCACTCTCGGAGAGGGAGCGTGGGGAGGCACTGGTGAAGAGGGCGGAATTGAAGATCGGGCTGAACCGGAGGCGCCGGGTTGACTCGGCGGTCGAGGACCTGGTGCAAGCGGTCAGGCTGAGTCGGGGCGAGGGAGATGATGTGACGTCGTTCTGTTTGTTGGGTCAGTGCTACGAGTGGAAAGGGATGAAGGAGGAAGCTAGGGAGGCTTTTGAGCGGGCCTTGAGGGCTGAGCCCGGGTCAGTTTTGGCCCGTCAAGGCTTGGATCGGTTAGGATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_2 TPR_8

Protein Analysis

215

Amino Acids

23.67

Weight (kDa)

10.06

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65520
fragaria_vesca	FvH4_1g19520 FvH4_5g34561 FvH4_5g34561 FvH4_5g34561 FvH4_5g34561 FvH4_5g34561
malus_domestica	MD08G1200200.v1.1 MD15G1310800.v1.1 MD15G1387400.v1.1
prunus_persica	Prupe.1G533800_v2.0.a1 Prupe.6G203100_v2.0.a1
pyrus_communis	pycom01g06830 pycom08g17360 pycom15g34740
rosa_chinensis	RchiOBHm_Chr2g0111021 RchiOBHm_Chr7g0235251
rosa_laevigata	RLG00000017858
rosa_multiflora	Rmu_sc0003994.1_g000008 Rmu_sc0004637.1_g000006 Rmu_sc0004657.1_g000046 Rmu_sc0005947.1_g000017
rosa_roxburghii	Rroxscaffold_3G00226160 Rroxscaffold_4G00298550 Rroxscaffold_7G00215170
rosa_rugosa	Rorug02G0170600 Rorug07G0289300
rosa_samantha	Rh2AG222600 Rh2BG234700 Rh2CG226000 Rh2DG230500
rosa_wichuraiana	Rw2G017200 Rw7G036900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	452
AatII	GACGTC	1 cut(s)	512
AccB1I	GGYRCC	2 cut(s)	4, 435
AccBSI	CCGCTC	1 cut(s)	580
AccII	CGCG	1 cut(s)	320
AciI	CCGC	9 cut(s)	133, 230, 269, 318, 350, 407, 452, 473, 580
AclWI	GGATC	2 cut(s)	168, 636
AcyI	GRCGYC	3 cut(s)	5, 436, 509
AfiI	CCNNNNNNNGG	1 cut(s)	199
AgsI	TTSAA	1 cut(s)	415
AjiI	CACGTC	1 cut(s)	337
AjnI	CCWGG	2 cut(s)	144, 462
AluBI	AGCT	4 cut(s)	25, 97, 290, 563
AluI	AGCT	4 cut(s)	25, 97, 290, 563
Alw26I	GTCTC	2 cut(s)	156, 252
AlwI	GGATC	2 cut(s)	168, 636
Ama87I	CYCGRG	3 cut(s)	165, 262, 599
AoxI	GGCC	6 cut(s)	28, 84, 201, 265, 582, 612
ApaI	GGGCCC	1 cut(s)	269
Asp700I	GAANNNNTTC	1 cut(s)	329
AspLEI	GCGC	3 cut(s)	7, 322, 438
AspS9I	GGNCC	7 cut(s)	85, 202, 265, 266, 460, 582, 613
AsuC2I	CCSGG	5 cut(s)	263, 264, 440, 600, 601
AsuHPI	GGTGA	2 cut(s)	146, 409
AvaI	CYCGRG	3 cut(s)	165, 262, 599
AvaII	GGWCC	1 cut(s)	460
AxyI	CCTNAGG	1 cut(s)	9
BaeGI	GKGCMC	2 cut(s)	269, 309
BanI	GGYRCC	2 cut(s)	4, 435
BanII	GRGCYC	3 cut(s)	172, 269, 600
BceAI	ACGGC	1 cut(s)	337
BciT130I	CCWGG	2 cut(s)	146, 464
BcnI	CCSGG	5 cut(s)	263, 264, 440, 600, 601
BcoDI	GTCTC	2 cut(s)	156, 252
BfaI	CTAG	4 cut(s)	47, 287, 564, 643
BfmI	CTRYAG	1 cut(s)	20
BfoI	RGCGCY	2 cut(s)	8, 439
BglI	GCCNNNNNGGC	1 cut(s)	590
BisI	GCNGC	1 cut(s)	350
BlpI	GCTNAGC	1 cut(s)	594
BlsI	GCNGC	1 cut(s)	351
Bme1390I	CCNGG	7 cut(s)	146, 263, 264, 440, 464, 600, 601
Bme18I	GGWCC	1 cut(s)	460
BmeT110I	CYCGRG	3 cut(s)	165, 262, 599
BmgBI	CACGTC	1 cut(s)	337
BmgT120I	GGNCC	7 cut(s)	85, 202, 265, 266, 460, 582, 613
BmiI	GGNNCC	3 cut(s)	6, 267, 437
BmrFI	CCNGG	7 cut(s)	146, 263, 264, 440, 464, 600, 601
BplI	GAGNNNNNCTC	2 cut(s)	105, 137
BpmI	CTGGAG	1 cut(s)	61
Bpu1102I	GCTNAGC	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	607
BpuMI	CCSGG	5 cut(s)	263, 264, 440, 600, 601
BsaHI	GRCGYC	3 cut(s)	5, 436, 509
BsaI	GGTCTC	2 cut(s)	156, 252
BsaJI	CCNNGG	3 cut(s)	145, 262, 599
BsaWI	WCCGGW	1 cut(s)	429
BsaXI	ACNNNNNCTCC	6 cut(s)	59, 89, 299, 329, 489, 519
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse1I	ACTGG	2 cut(s)	246, 399
Bse21I	CCTNAGG	1 cut(s)	9
Bse3DI	GCAATG	1 cut(s)	57
BseBI	CCWGG	2 cut(s)	146, 464
BseDI	CCNNGG	3 cut(s)	145, 262, 599
BseGI	GGATG	2 cut(s)	36, 555
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	2 cut(s)	473, 585
BseNI	ACTGG	2 cut(s)	246, 399
BseSI	GKGCMC	2 cut(s)	269, 309
Bsh1236I	CGCG	1 cut(s)	320
Bsh1285I	CGRYCG	1 cut(s)	456
BshFI	GGCC	6 cut(s)	30, 86, 203, 267, 584, 614
BshNI	GGYRCC	2 cut(s)	4, 435
BsiEI	CGRYCG	1 cut(s)	456
BsiHKCI	CYCGRG	3 cut(s)	165, 262, 599
BsiSI	CCGG	4 cut(s)	263, 430, 439, 600
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmAI	GTCTC	2 cut(s)	156, 252
BsnI	GGCC	6 cut(s)	30, 86, 203, 267, 584, 614
Bso31I	GGTCTC	2 cut(s)	156, 252
BsoBI	CYCGRG	3 cut(s)	165, 262, 599
Bsp120I	GGGCCC	1 cut(s)	265
Bsp1286I	GDGCHC	4 cut(s)	172, 269, 309, 600
Bsp143I	GATC	4 cut(s)	173, 295, 417, 628
Bsp1720I	GCTNAGC	1 cut(s)	594
BspACI	CCGC	9 cut(s)	133, 230, 269, 318, 350, 407, 452, 473, 580
BspANI	GGCC	6 cut(s)	30, 86, 203, 267, 584, 614
BspCNI	CTCAG	2 cut(s)	474, 586
BspFNI	CGCG	1 cut(s)	320
BspLI	GGNNCC	3 cut(s)	6, 267, 437
BspPI	GGATC	2 cut(s)	168, 636
BspT107I	GGYRCC	2 cut(s)	4, 435
BspTNI	GGTCTC	2 cut(s)	156, 252
BsrBI	CCGCTC	1 cut(s)	580
BsrDI	GCAATG	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	246, 399
BssECI	CCNNGG	3 cut(s)	145, 262, 599
BssMI	GATC	4 cut(s)	173, 295, 417, 628
BssNI	GRCGYC	3 cut(s)	5, 436, 509
Bst2UI	CCWGG	2 cut(s)	146, 464
Bst6I	CTCTTC	1 cut(s)	395
BstACI	GRCGYC	3 cut(s)	5, 436, 509
BstC8I	GCNNGC	4 cut(s)	201, 269, 471, 582
BstDEI	CTNAG	3 cut(s)	9, 482, 594
BstF5I	GGATG	2 cut(s)	36, 555
BstFNI	CGCG	1 cut(s)	320
BstH2I	RGCGCY	2 cut(s)	8, 439
BstHHI	GCGC	3 cut(s)	7, 322, 438
BstKTI	GATC	4 cut(s)	176, 298, 420, 631
BstMAI	GTCTC	2 cut(s)	156, 252
BstMBI	GATC	4 cut(s)	173, 295, 417, 628
BstMCI	CGRYCG	1 cut(s)	456
BstMWI	GCNNNNNNNGC	4 cut(s)	215, 236, 569, 590
BstNI	CCWGG	2 cut(s)	146, 464
BstSCI	CCNGG	7 cut(s)	144, 261, 262, 438, 462, 598, 599
BstSFI	CTRYAG	1 cut(s)	20
BstSLI	GKGCMC	2 cut(s)	269, 309
BstUI	CGCG	1 cut(s)	320
Bsu36I	CCTNAGG	1 cut(s)	9
BsuRI	GGCC	6 cut(s)	30, 86, 203, 267, 584, 614
BtrI	CACGTC	1 cut(s)	337
BtsCI	GGATG	2 cut(s)	36, 555
BtsIMutI	CAGTG	3 cut(s)	239, 392, 536
Cac8I	GCNNGC	4 cut(s)	201, 269, 471, 582
CfoI	GCGC	3 cut(s)	7, 322, 438
Cfr13I	GGNCC	7 cut(s)	85, 202, 265, 266, 460, 582, 613
Cfr9I	CCCGGG	2 cut(s)	262, 599
CsiI	ACCWGGT	1 cut(s)	462
CviAII	CATG	1 cut(s)	206
DdeI	CTNAG	3 cut(s)	9, 482, 594
DinI	GGCGCC	2 cut(s)	6, 437
DpnI	GATC	4 cut(s)	175, 297, 419, 630
DpnII	GATC	4 cut(s)	173, 295, 417, 628
DrdI	GACNNNNNNGTC	1 cut(s)	452
DseDI	GACNNNNNNGTC	1 cut(s)	452
Eam1104I	CTCTTC	1 cut(s)	395
EarI	CTCTTC	1 cut(s)	395
EciI	GGCGGA	2 cut(s)	245, 422
Eco24I	GRGCYC	3 cut(s)	172, 269, 600
Eco31I	GGTCTC	2 cut(s)	156, 252
Eco47I	GGWCC	1 cut(s)	460
Eco81I	CCTNAGG	1 cut(s)	9
Eco88I	CYCGRG	3 cut(s)	165, 262, 599
EcoO109I	RGGNCCY	2 cut(s)	85, 460
EcoRII	CCWGG	2 cut(s)	144, 462
EcoT38I	GRGCYC	3 cut(s)	172, 269, 600
EgeI	GGCGCC	2 cut(s)	6, 437
EheI	GGCGCC	2 cut(s)	6, 437
FaeI	CATG	1 cut(s)	209
FaiI	YATR	2 cut(s)	65, 207
FatI	CATG	1 cut(s)	205
FauI	CCCGC	3 cut(s)	140, 276, 573
Fnu4HI	GCNGC	1 cut(s)	350
FokI	GGATG	2 cut(s)	23, 562
FriOI	GRGCYC	3 cut(s)	172, 269, 600
Fsp4HI	GCNGC	1 cut(s)	350
FspBI	CTAG	4 cut(s)	47, 287, 564, 643
GlaI	GCGC	3 cut(s)	6, 321, 437
GluI	GCNGC	1 cut(s)	350
GsuI	CTGGAG	1 cut(s)	61
HaeII	RGCGCY	2 cut(s)	8, 439
HaeIII	GGCC	6 cut(s)	30, 86, 203, 267, 584, 614
HapII	CCGG	4 cut(s)	263, 430, 439, 600
HhaI	GCGC	3 cut(s)	7, 322, 438
Hin1I	GRCGYC	3 cut(s)	5, 436, 509
Hin1II	CATG	1 cut(s)	209
Hin6I	GCGC	3 cut(s)	5, 320, 436
HinP1I	GCGC	3 cut(s)	5, 320, 436
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HinfI	GANTC	3 cut(s)	446, 484, 639
HpaII	CCGG	4 cut(s)	263, 430, 439, 600
HphI	GGTGA	2 cut(s)	146, 409
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188I	TCNGA	3 cut(s)	101, 162, 373
Hpy188III	TCNNGA	2 cut(s)	78, 293
Hpy8I	GTNNAC	1 cut(s)	445
Hpy99I	CGWCG	2 cut(s)	338, 514
HpyAV	CCTTC	4 cut(s)	41, 167, 229, 547
HpyCH4IV	ACGT	2 cut(s)	336, 509
HpyCH4V	TGCA	1 cut(s)	469
HpyF10VI	GCNNNNNNNGC	4 cut(s)	215, 236, 569, 590
HpyF3I	CTNAG	3 cut(s)	9, 482, 594
HpySE526I	ACGT	2 cut(s)	336, 509
Hsp92I	GRCGYC	3 cut(s)	5, 436, 509
Hsp92II	CATG	1 cut(s)	209
HspAI	GCGC	3 cut(s)	5, 320, 436
KasI	GGCGCC	2 cut(s)	4, 435
Kzo9I	GATC	4 cut(s)	173, 295, 417, 628
LmnI	GCTCC	2 cut(s)	102, 379
MabI	ACCWGGT	1 cut(s)	462
MaeI	CTAG	4 cut(s)	47, 287, 564, 643
MaeII	ACGT	2 cut(s)	336, 509
MaeIII	GTNAC	2 cut(s)	363, 505
MalI	GATC	4 cut(s)	175, 297, 419, 630
MbiI	CCGCTC	1 cut(s)	580
MboI	GATC	4 cut(s)	173, 295, 417, 628
MboII	GAAGA	3 cut(s)	49, 412, 427
MhlI	GDGCHC	4 cut(s)	172, 269, 309, 600
MluCI	AATT	1 cut(s)	410
Mly113I	GGCGCC	2 cut(s)	5, 436
MlyI	GAGTC	2 cut(s)	440, 493
MroXI	GAANNNNTTC	1 cut(s)	329
MseI	TTAA	1 cut(s)	221
MspI	CCGG	4 cut(s)	263, 430, 439, 600
MspR9I	CCNGG	7 cut(s)	146, 263, 264, 440, 464, 600, 601
MvaI	CCWGG	2 cut(s)	146, 464
MvnI	CGCG	1 cut(s)	320
MwoI	GCNNNNNNNGC	4 cut(s)	215, 236, 569, 590
NarI	GGCGCC	2 cut(s)	5, 436
NciI	CCSGG	5 cut(s)	263, 264, 440, 600, 601
NdeII	GATC	4 cut(s)	173, 295, 417, 628
NlaIII	CATG	1 cut(s)	209
NlaIV	GGNNCC	3 cut(s)	6, 267, 437
NmeAIII	GCCGAG	2 cut(s)	6, 428
NmuCI	GTSAC	2 cut(s)	363, 505
PdmI	GAANNNNTTC	1 cut(s)	329
PfeI	GAWTC	1 cut(s)	639
PkrI	GCNGC	1 cut(s)	351
PleI	GAGTC	2 cut(s)	440, 492
PluTI	GGCGCC	2 cut(s)	8, 439
PpsI	GAGTC	2 cut(s)	440, 492
PpuMI	RGGWCCY	1 cut(s)	460
Psp5II	RGGWCCY	1 cut(s)	460
Psp6I	CCWGG	2 cut(s)	144, 462
PspGI	CCWGG	2 cut(s)	144, 462
PspN4I	GGNNCC	3 cut(s)	6, 267, 437
PspOMI	GGGCCC	1 cut(s)	265
PspPI	GGNCC	7 cut(s)	85, 202, 265, 266, 460, 582, 613
PspPPI	RGGWCCY	1 cut(s)	460
SaqAI	TTAA	1 cut(s)	221
SatI	GCNGC	1 cut(s)	350
Sau3AI	GATC	4 cut(s)	173, 295, 417, 628
Sau96I	GGNCC	7 cut(s)	85, 202, 265, 266, 460, 582, 613
SchI	GAGTC	2 cut(s)	440, 493
ScrFI	CCNGG	7 cut(s)	146, 263, 264, 440, 464, 600, 601
SduI	GDGCHC	4 cut(s)	172, 269, 309, 600
SexAI	ACCWGGT	1 cut(s)	462
SfcI	CTRYAG	1 cut(s)	20
SfoI	GGCGCC	2 cut(s)	6, 437
SinI	GGWCC	1 cut(s)	460
SmaI	CCCGGG	2 cut(s)	264, 601
SmlI	CTYRAG	1 cut(s)	586
SmoI	CTYRAG	1 cut(s)	586
Sse9I	AATT	1 cut(s)	410
SsiI	CCGC	9 cut(s)	133, 230, 269, 318, 350, 407, 452, 473, 580
SspDI	GGCGCC	2 cut(s)	4, 435
SspMI	CTAG	4 cut(s)	47, 287, 564, 643
StyD4I	CCNGG	7 cut(s)	144, 261, 262, 438, 462, 598, 599
TaiI	ACGT	2 cut(s)	339, 512
TaqI	TCGA	4 cut(s)	128, 294, 333, 456
TasI	AATT	1 cut(s)	410
TauI	GCSGC	1 cut(s)	352
TfiI	GAWTC	1 cut(s)	639
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TscAI	CASTG	3 cut(s)	246, 399, 536
TseFI	GTSAC	2 cut(s)	363, 505
Tsp45I	GTSAC	2 cut(s)	363, 505
TspDTI	ATGAA	1 cut(s)	566
TspGWI	ACGGA	1 cut(s)	239
TspMI	CCCGGG	2 cut(s)	262, 599
TspRI	CASTG	3 cut(s)	246, 399, 536
VpaK11BI	GGWCC	1 cut(s)	460
XmaI	CCCGGG	2 cut(s)	262, 599
XmnI	GAANNNNTTC	1 cut(s)	329
XspI	CTAG	4 cut(s)	47, 287, 564, 643
ZraI	GACGTC	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.