Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004173

Physical Location & Seq

Genomic Coordinates Reverse (-)

25923736 .. 25924455

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1200200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGATTTCCTTCAATCCCAACTCCGATACATCAATTCCCAAACAGAGGAATCGGCTCCGATCGACAAGTCCCGAATAGCCAAGGACATTCTTCTCCAAGCCGGCCTAATCCTCTTCGTCGTCGTCGCCTTCCTCACCATCCACAACATCCCCCAGAAGCTCTTCGCTAAACTCCGGTACCGCTTCCGTAACAAAACCGCCGCCCGGGCCAAGCGCCACTTCGTCCTCGGGGCCCAGCTCCTCGCCCAGTCCCGATCCGCCGACTCCCTCGCCTCCTCCGCCTCCCTCTCCCAGCAGGCCCTCGACGAGGCCGAAAAGGCCATCGCGCTCGTCCCCAAGGACGCCGCAGCCCACATCCTCAAATCCCTCGCCCTCGACGCCCAGGGATTCAAGACCTCCGCACTCGACGCCATCGAGGTCGCGCTGTCCCCTCTCTGCCGCAAAAGCCTGACCGACGAGGAGCGCGGCGATGCGGTCGTCAAGAGGGCGGAGATCATGCTGTCGATGAACCGGAAAGCCCAGGTTGACCCGGTGATCGAGGATTTGAATCGGGCTGTGGAGCTGAGTCCGGAGAATGTGAAGGCATTTTGTACGTTGGGAGAGTGCTACGAGGGGAAGAAGATGACGGAGGAGGCCAGGAAGGCTTACGAGGCGGCGCTGAGGGTACAGCCCAGATTGAAAGCCGCCATGGACGCTCTCGAACGACTCGGTTCGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2 TPR_8

Protein Analysis

240

Amino Acids

26.33

Weight (kDa)

9.08

Isoelectric Point (pI)

56.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65520
fragaria_vesca	FvH4_1g19520 FvH4_5g34561 FvH4_5g34561 FvH4_5g34561 FvH4_5g34561 FvH4_5g34561
malus_domestica	MD08G1200200.v1.1 MD15G1310800.v1.1 MD15G1387400.v1.1
prunus_persica	Prupe.1G533800_v2.0.a1 Prupe.6G203100_v2.0.a1
pyrus_communis	pycom01g06830 pycom08g17360 pycom15g34740
rosa_chinensis	RchiOBHm_Chr2g0111021 RchiOBHm_Chr7g0235251
rosa_laevigata	RLG00000017858
rosa_multiflora	Rmu_sc0003994.1_g000008 Rmu_sc0004637.1_g000006 Rmu_sc0004657.1_g000046 Rmu_sc0005947.1_g000017
rosa_roxburghii	Rroxscaffold_3G00226160 Rroxscaffold_4G00298550 Rroxscaffold_7G00215170
rosa_rugosa	Rorug02G0170600 Rorug07G0289300
rosa_samantha	Rh2AG222600 Rh2BG234700 Rh2CG226000 Rh2DG230500
rosa_wichuraiana	Rw2G017200 Rw7G036900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	177
AccB1I	GGYRCC	1 cut(s)	177
AccII	CGCG	3 cut(s)	326, 422, 465
AccIII	TCCGGA	1 cut(s)	568
AclWI	GGATC	1 cut(s)	249
AcyI	GRCGYC	3 cut(s)	342, 378, 408
AfaI	GTAC	3 cut(s)	179, 592, 666
AfiI	CCNNNNNNNGG	3 cut(s)	46, 204, 307
AgsI	TTSAA	4 cut(s)	14, 391, 547, 679
AjnI	CCWGG	3 cut(s)	381, 519, 635
AjuI	GAANNNNNNNTTGG	2 cut(s)	203, 235
AluBI	AGCT	3 cut(s)	160, 238, 562
AluI	AGCT	3 cut(s)	160, 238, 562
AlwI	GGATC	1 cut(s)	249
Ama87I	CYCGRG	2 cut(s)	204, 227
Aor13HI	TCCGGA	1 cut(s)	568
AoxI	GGCC	7 cut(s)	103, 207, 231, 297, 309, 318, 633
ApaI	GGGCCC	1 cut(s)	235
ApeKI	GCWGC	1 cut(s)	347
Asp700I	GAANNNNTTC	1 cut(s)	161
Asp718I	GGTACC	1 cut(s)	177
AspLEI	GCGC	5 cut(s)	216, 328, 424, 465, 658
AspS9I	GGNCC	4 cut(s)	207, 231, 232, 298
AsuC2I	CCSGG	3 cut(s)	205, 206, 530
AsuHPI	GGTGA	2 cut(s)	127, 544
AvaI	CYCGRG	2 cut(s)	204, 227
BaeGI	GKGCMC	1 cut(s)	235
BaeI	ACNNNNGTAYC	2 cut(s)	161, 194
BanI	GGYRCC	1 cut(s)	177
BanII	GRGCYC	1 cut(s)	235
BbvCI	CCTCAGC	1 cut(s)	659
BbvI	GCAGC	1 cut(s)	359
BccI	CCATC	3 cut(s)	146, 329, 419
BciT130I	CCWGG	3 cut(s)	383, 521, 637
BcnI	CCSGG	3 cut(s)	205, 206, 530
BfoI	RGCGCY	2 cut(s)	217, 659
BglI	GCCNNNNNGGC	3 cut(s)	206, 317, 641
BisI	GCNGC	7 cut(s)	201, 345, 348, 439, 466, 654, 684
BlsI	GCNGC	7 cut(s)	202, 346, 349, 440, 467, 655, 685
Bme1390I	CCNGG	6 cut(s)	205, 206, 383, 521, 530, 637
BmeT110I	CYCGRG	2 cut(s)	204, 227
BmgT120I	GGNCC	4 cut(s)	207, 231, 232, 298
BmiI	GGNNCC	4 cut(s)	57, 179, 232, 233
BmrFI	CCNGG	6 cut(s)	205, 206, 383, 521, 530, 637
BmrI	ACTGGG	1 cut(s)	241
BmsI	GCATC	1 cut(s)	460
BmuI	ACTGGG	1 cut(s)	241
Bpu10I	CCTNAGC	1 cut(s)	659
BpuMI	CCSGG	3 cut(s)	205, 206, 530
BsaBI	GATNNNNATC	1 cut(s)	546
BsaHI	GRCGYC	3 cut(s)	342, 378, 408
BsaJI	CCNNGG	8 cut(s)	81, 204, 226, 336, 381, 382, 519, 687
BsaWI	WCCGGW	3 cut(s)	174, 510, 568
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 204, 307
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	247
Bse8I	GATNNNNATC	1 cut(s)	546
BseAI	TCCGGA	1 cut(s)	568
BseBI	CCWGG	3 cut(s)	383, 521, 637
BseDI	CCNNGG	8 cut(s)	81, 204, 226, 336, 381, 382, 519, 687
BseGI	GGATG	3 cut(s)	138, 147, 354
BseJI	GATNNNNATC	1 cut(s)	546
BseLI	CCNNNNNNNGG	3 cut(s)	46, 204, 307
BseMII	CTCAG	2 cut(s)	554, 650
BseNI	ACTGG	1 cut(s)	247
BseRI	GAGGAG	4 cut(s)	230, 265, 473, 644
BseSI	GKGCMC	1 cut(s)	235
BseXI	GCAGC	1 cut(s)	359
BseYI	CCCAGC	2 cut(s)	234, 291
Bsh1236I	CGCG	3 cut(s)	326, 422, 465
Bsh1285I	CGRYCG	2 cut(s)	63, 477
BshFI	GGCC	7 cut(s)	105, 209, 233, 299, 311, 320, 635
BshNI	GGYRCC	1 cut(s)	177
BsiEI	CGRYCG	2 cut(s)	63, 477
BsiHKCI	CYCGRG	2 cut(s)	204, 227
BsiSI	CCGG	6 cut(s)	102, 175, 205, 511, 530, 569
BslFI	GGGAC	4 cut(s)	55, 235, 317, 412
BslI	CCNNNNNNNGG	3 cut(s)	46, 204, 307
BsmFI	GGGAC	4 cut(s)	55, 235, 317, 412
BsnI	GGCC	7 cut(s)	105, 209, 233, 299, 311, 320, 635
BsoBI	CYCGRG	2 cut(s)	204, 227
Bsp120I	GGGCCC	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp13I	TCCGGA	1 cut(s)	568
Bsp143I	GATC	4 cut(s)	60, 254, 492, 534
Bsp19I	CCATGG	1 cut(s)	687
BspANI	GGCC	7 cut(s)	105, 209, 233, 299, 311, 320, 635
BspCNI	CTCAG	2 cut(s)	555, 651
BspEI	TCCGGA	1 cut(s)	568
BspFNI	CGCG	3 cut(s)	326, 422, 465
BspLI	GGNNCC	4 cut(s)	57, 179, 232, 233
BspPI	GGATC	1 cut(s)	249
BspQI	GCTCTTC	1 cut(s)	167
BspT107I	GGYRCC	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	247
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	8 cut(s)	81, 204, 226, 336, 381, 382, 519, 687
BssMI	GATC	4 cut(s)	60, 254, 492, 534
BssNI	GRCGYC	3 cut(s)	342, 378, 408
BssT1I	CCWWGG	3 cut(s)	81, 336, 687
Bst2UI	CCWGG	3 cut(s)	383, 521, 637
Bst6I	CTCTTC	2 cut(s)	119, 167
BstACI	GRCGYC	3 cut(s)	342, 378, 408
BstC8I	GCNNGC	2 cut(s)	103, 297
BstDEI	CTNAG	2 cut(s)	563, 659
BstDSI	CCRYGG	1 cut(s)	687
BstENI	CCTNNNNNAGG	1 cut(s)	305
BstF5I	GGATG	3 cut(s)	138, 147, 354
BstFNI	CGCG	3 cut(s)	326, 422, 465
BstH2I	RGCGCY	2 cut(s)	217, 659
BstHHI	GCGC	5 cut(s)	216, 328, 424, 465, 658
BstKTI	GATC	4 cut(s)	63, 257, 495, 537
BstMBI	GATC	4 cut(s)	60, 254, 492, 534
BstMCI	CGRYCG	2 cut(s)	63, 477
BstMWI	GCNNNNNNNGC	9 cut(s)	206, 278, 317, 377, 407, 444, 641, 650, 692
BstNI	CCWGG	3 cut(s)	383, 521, 637
BstSCI	CCNGG	6 cut(s)	203, 204, 381, 519, 528, 635
BstSLI	GKGCMC	1 cut(s)	235
BstUI	CGCG	3 cut(s)	326, 422, 465
BstV1I	GCAGC	1 cut(s)	359
BsuRI	GGCC	7 cut(s)	105, 209, 233, 299, 311, 320, 635
BtgI	CCRYGG	1 cut(s)	687
BtgZI	GCGATG	2 cut(s)	307, 483
BtsCI	GGATG	3 cut(s)	138, 147, 354
Cac8I	GCNNGC	2 cut(s)	103, 297
CfoI	GCGC	5 cut(s)	216, 328, 424, 465, 658
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	4 cut(s)	207, 231, 232, 298
Cfr9I	CCCGGG	1 cut(s)	204
CseI	GACGC	4 cut(s)	350, 386, 416, 701
Csp6I	GTAC	3 cut(s)	178, 591, 665
CviAII	CATG	2 cut(s)	496, 688
CviQI	GTAC	3 cut(s)	178, 591, 665
DdeI	CTNAG	2 cut(s)	563, 659
DpnI	GATC	4 cut(s)	62, 256, 494, 536
DpnII	GATC	4 cut(s)	60, 254, 492, 534
Eam1104I	CTCTTC	2 cut(s)	119, 167
EarI	CTCTTC	2 cut(s)	119, 167
EciI	GGCGGA	3 cut(s)	247, 268, 503
Eco130I	CCWWGG	3 cut(s)	81, 336, 687
Eco24I	GRGCYC	1 cut(s)	235
Eco88I	CYCGRG	2 cut(s)	204, 227
EcoNI	CCTNNNNNAGG	1 cut(s)	305
EcoO109I	RGGNCCY	2 cut(s)	231, 298
EcoRII	CCWGG	3 cut(s)	381, 519, 635
EcoT14I	CCWWGG	3 cut(s)	81, 336, 687
EcoT38I	GRGCYC	1 cut(s)	235
ErhI	CCWWGG	3 cut(s)	81, 336, 687
FaeI	CATG	2 cut(s)	499, 691
FaiI	YATR	2 cut(s)	497, 689
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FaqI	GGGAC	4 cut(s)	55, 235, 317, 412
FatI	CATG	2 cut(s)	495, 687
Fnu4HI	GCNGC	7 cut(s)	201, 345, 348, 439, 466, 654, 684
FokI	GGATG	3 cut(s)	125, 134, 341
FriOI	GRGCYC	1 cut(s)	235
Fsp4HI	GCNGC	7 cut(s)	201, 345, 348, 439, 466, 654, 684
GlaI	GCGC	5 cut(s)	215, 327, 423, 464, 657
GluI	GCNGC	7 cut(s)	201, 345, 348, 439, 466, 654, 684
GsaI	CCCAGC	2 cut(s)	238, 295
HaeII	RGCGCY	2 cut(s)	217, 659
HaeIII	GGCC	7 cut(s)	105, 209, 233, 299, 311, 320, 635
HapII	CCGG	6 cut(s)	102, 175, 205, 511, 530, 569
HgaI	GACGC	4 cut(s)	350, 386, 416, 701
HhaI	GCGC	5 cut(s)	216, 328, 424, 465, 658
Hin1I	GRCGYC	3 cut(s)	342, 378, 408
Hin1II	CATG	2 cut(s)	499, 691
Hin6I	GCGC	5 cut(s)	214, 326, 422, 463, 656
HinP1I	GCGC	5 cut(s)	214, 326, 422, 463, 656
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HinfI	GANTC	6 cut(s)	50, 263, 387, 547, 565, 705
HpaII	CCGG	6 cut(s)	102, 175, 205, 511, 530, 569
HphI	GGTGA	2 cut(s)	127, 544
Hpy166II	GTNNAC	1 cut(s)	526
Hpy188I	TCNGA	2 cut(s)	26, 60
Hpy188III	TCNNGA	6 cut(s)	72, 252, 391, 481, 569, 698
Hpy8I	GTNNAC	1 cut(s)	526
Hpy99I	CGWCG	7 cut(s)	122, 125, 128, 308, 380, 410, 458
HpyAV	CCTTC	4 cut(s)	20, 139, 574, 634
HpyCH4IV	ACGT	1 cut(s)	593
HpyF10VI	GCNNNNNNNGC	9 cut(s)	206, 278, 317, 377, 407, 444, 641, 650, 692
HpyF3I	CTNAG	2 cut(s)	563, 659
HpySE526I	ACGT	1 cut(s)	593
Hsp92I	GRCGYC	3 cut(s)	342, 378, 408
Hsp92II	CATG	2 cut(s)	499, 691
HspAI	GCGC	5 cut(s)	214, 326, 422, 463, 656
Kpn2I	TCCGGA	1 cut(s)	568
KpnI	GGTACC	1 cut(s)	181
KroI	GCCGGC	1 cut(s)	101
KroNI	GCCGGC	1 cut(s)	103
Kzo9I	GATC	4 cut(s)	60, 254, 492, 534
LguI	GCTCTTC	1 cut(s)	167
LmnI	GCTCC	4 cut(s)	61, 243, 460, 559
Lsp1109I	GCAGC	1 cut(s)	359
LweI	GCATC	1 cut(s)	460
MaeII	ACGT	1 cut(s)	593
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	4 cut(s)	62, 256, 494, 536
MboI	GATC	4 cut(s)	60, 254, 492, 534
MboII	GAAGA	5 cut(s)	83, 106, 154, 628, 631
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	1 cut(s)	34
MlyI	GAGTC	3 cut(s)	257, 574, 699
MroI	TCCGGA	1 cut(s)	568
MroNI	GCCGGC	1 cut(s)	101
MroXI	GAANNNNTTC	1 cut(s)	161
MspI	CCGG	6 cut(s)	102, 175, 205, 511, 530, 569
MspR9I	CCNGG	6 cut(s)	205, 206, 383, 521, 530, 637
MvaI	CCWGG	3 cut(s)	383, 521, 637
MvnI	CGCG	3 cut(s)	326, 422, 465
MwoI	GCNNNNNNNGC	9 cut(s)	206, 278, 317, 377, 407, 444, 641, 650, 692
NaeI	GCCGGC	1 cut(s)	103
NciI	CCSGG	3 cut(s)	205, 206, 530
NcoI	CCATGG	1 cut(s)	687
NdeII	GATC	4 cut(s)	60, 254, 492, 534
NgoMIV	GCCGGC	1 cut(s)	101
NlaIII	CATG	2 cut(s)	499, 691
NlaIV	GGNNCC	4 cut(s)	57, 179, 232, 233
PasI	CCCWGGG	1 cut(s)	382
PciSI	GCTCTTC	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	2 cut(s)	309, 411
PdiI	GCCGGC	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	161
PfeI	GAWTC	3 cut(s)	50, 387, 547
PkrI	GCNGC	7 cut(s)	202, 346, 349, 440, 467, 655, 685
Ple19I	CGATCG	1 cut(s)	63
PleI	GAGTC	3 cut(s)	257, 573, 699
PpsI	GAGTC	3 cut(s)	257, 573, 699
Psp6I	CCWGG	3 cut(s)	381, 519, 635
PspFI	CCCAGC	2 cut(s)	234, 291
PspGI	CCWGG	3 cut(s)	381, 519, 635
PspN4I	GGNNCC	4 cut(s)	57, 179, 232, 233
PspOMI	GGGCCC	1 cut(s)	231
PspPI	GGNCC	4 cut(s)	207, 231, 232, 298
PvuI	CGATCG	1 cut(s)	63
RsaI	GTAC	3 cut(s)	179, 592, 666
RsaNI	GTAC	3 cut(s)	178, 591, 665
SapI	GCTCTTC	1 cut(s)	167
SatI	GCNGC	7 cut(s)	201, 345, 348, 439, 466, 654, 684
Sau3AI	GATC	4 cut(s)	60, 254, 492, 534
Sau96I	GGNCC	4 cut(s)	207, 231, 232, 298
SchI	GAGTC	3 cut(s)	257, 574, 699
ScrFI	CCNGG	6 cut(s)	205, 206, 383, 521, 530, 637
SduI	GDGCHC	1 cut(s)	235
SetI	ASST	7 cut(s)	162, 240, 398, 420, 525, 564, 596
SfaNI	GCATC	1 cut(s)	460
SfiI	GGCCNNNNNGGCC	1 cut(s)	317
SmaI	CCCGGG	1 cut(s)	206
SrfI	GCCCGGGC	1 cut(s)	206
Sse9I	AATT	1 cut(s)	34
StyD4I	CCNGG	6 cut(s)	203, 204, 381, 519, 528, 635
StyI	CCWWGG	3 cut(s)	81, 336, 687
TaiI	ACGT	1 cut(s)	596
TaqI	TCGA	9 cut(s)	63, 303, 375, 405, 414, 503, 537, 699, 713
TaqII	GACCGA	1 cut(s)	467
TasI	AATT	1 cut(s)	34
TauI	GCSGC	6 cut(s)	203, 347, 441, 468, 656, 686
TfiI	GAWTC	3 cut(s)	50, 387, 547
TseI	GCWGC	1 cut(s)	347
TspDTI	ATGAA	1 cut(s)	521
TspGWI	ACGGA	2 cut(s)	176, 641
TspMI	CCCGGG	1 cut(s)	204
XagI	CCTNNNNNAGG	1 cut(s)	305
XmaI	CCCGGG	1 cut(s)	204
XmnI	GAANNNNTTC	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.