Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004173

Physical Location & Seq

Genomic Coordinates Forward (+)

25232800 .. 25235332

Gene Structure 2533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g34561.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTTCAGTCAGATGGTAGACGACATTCTCCTCCAAATCGGACTAGTCCTCCTCGTCGTCGTCGTCTTCCTCTTCATCCACAACGTCCCCAAGCGAGTCCTCGCCAACCTCCGCCTCCGTCTCCAAAGCAAATCCGGCATCCAATCCAAGCGCCACTTCGTCCTCGGCGCCCAGCTCCTCGCCCAAGCCAGATCCGCCACCCAATCCACCTCCTCCTCCTCCTCCGCCGCCTCTCTCTCCAAACAGGCCCTCGAACACGCCGACAAGGCCATCGCTCTCGATCCCAAAGACGCCGCCGCGCACATCCTCAAAGCCCTAGCTCTCGACGCCCAAGGATTCAAGACCTCCGCGCTCGACGCCATCGAAGTCGCGCTCTCCCCGCTCTGCCGGAAGAGCCTTGCCGACGACGAGCGCGGCGACGCGCTTTGTAAGCGGGCGGAGATTAAGATGTCGATGAACCGGCCGGCGAGGGTTGACTCGGTCATCGAGGATTTGACTCTGGCGGTGAAGCTGAGCCCGGAGAATGTTAAGGCGTTTTGCACGCTGGGAGAGTGTTATGAGGAGAAGAAGATGACGGAGGAGGCTAAGAAGGCTTATGAGGAGGCCTTGAAGATTCAGCCGCGGCTCGCCGTCGCGAAGGAGGCGCTGGACCGCCTTGGTTCGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2 TPR_8

Protein Analysis

223

Amino Acids

24.13

Weight (kDa)

8.84

Isoelectric Point (pI)

57.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_1	PF00515	176 - 208	2.3e-07	Tetratricopeptide repeat
TPR_2	PF07719	177 - 208	2.3e-06	Tetratricopeptide repeat
TPR_8	PF13181	177 - 207	1.8e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65520
fragaria_vesca	FvH4_1g19520 FvH4_5g34561 FvH4_5g34561 FvH4_5g34561 FvH4_5g34561 FvH4_5g34561
malus_domestica	MD08G1200200.v1.1 MD15G1310800.v1.1 MD15G1387400.v1.1
prunus_persica	Prupe.1G533800_v2.0.a1 Prupe.6G203100_v2.0.a1
pyrus_communis	pycom01g06830 pycom08g17360 pycom15g34740
rosa_chinensis	RchiOBHm_Chr2g0111021 RchiOBHm_Chr7g0235251
rosa_laevigata	RLG00000017858
rosa_multiflora	Rmu_sc0003994.1_g000008 Rmu_sc0004637.1_g000006 Rmu_sc0004657.1_g000046 Rmu_sc0005947.1_g000017
rosa_roxburghii	Rroxscaffold_3G00226160 Rroxscaffold_4G00298550 Rroxscaffold_7G00215170
rosa_rugosa	Rorug02G0170600 Rorug07G0289300
rosa_samantha	Rh2AG222600 Rh2BG234700 Rh2CG226000 Rh2DG230500
rosa_wichuraiana	Rw2G017200 Rw7G036900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AccBSI	CCGCTC	1 cut(s)	382
AccI	GTMKAC	1 cut(s)	18
AccII	CGCG	7 cut(s)	299, 350, 371, 414, 422, 622, 635
AclWI	GGATC	2 cut(s)	186, 275
AcoI	YGGCCR	1 cut(s)	461
AcyI	GRCGYC	4 cut(s)	168, 291, 327, 357
AgsI	TTSAA	2 cut(s)	340, 610
AhlI	ACTAGT	1 cut(s)	43
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	3 cut(s)	175, 320, 511
AluI	AGCT	3 cut(s)	175, 320, 511
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	2 cut(s)	186, 275
AoxI	GGCC	4 cut(s)	246, 267, 461, 603
AspLEI	GCGC	8 cut(s)	153, 170, 301, 352, 373, 414, 424, 646
AspS9I	GGNCC	2 cut(s)	247, 649
AsuC2I	CCSGG	1 cut(s)	518
AsuHPI	GGTGA	1 cut(s)	517
AvaII	GGWCC	1 cut(s)	649
BanI	GGYRCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	518
BbsI	GAAGAC	1 cut(s)	58
BccI	CCATC	3 cut(s)	7, 278, 368
BceAI	ACGGC	1 cut(s)	614
BcnI	CCSGG	1 cut(s)	518
BcoDI	GTCTC	1 cut(s)	125
BcuI	ACTAGT	1 cut(s)	43
BfaI	CTAG	2 cut(s)	44, 317
BfoI	RGCGCY	3 cut(s)	154, 171, 647
BglI	GCCNNNNNGGC	1 cut(s)	266
BisI	GCNGC	6 cut(s)	228, 294, 297, 415, 620, 623
BlpI	GCTNAGC	1 cut(s)	512
BlsI	GCNGC	6 cut(s)	229, 295, 298, 416, 621, 624
Bme1390I	CCNGG	1 cut(s)	518
Bme18I	GGWCC	1 cut(s)	649
BmgT120I	GGNCC	2 cut(s)	247, 649
BmiI	GGNNCC	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	518
BmsI	GCATC	1 cut(s)	147
BpiI	GAAGAC	1 cut(s)	58
Bpu1102I	GCTNAGC	1 cut(s)	512
BpuMI	CCSGG	1 cut(s)	518
BsaHI	GRCGYC	4 cut(s)	168, 291, 327, 357
BsaJI	CCNNGG	4 cut(s)	163, 331, 620, 655
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bse118I	RCCGGY	2 cut(s)	459, 463
BseDI	CCNNGG	4 cut(s)	163, 331, 620, 655
BseGI	GGATG	3 cut(s)	75, 138, 303
BseMII	CTCAG	1 cut(s)	503
BseX3I	CGGCCG	1 cut(s)	461
BseYI	CCCAGC	2 cut(s)	171, 544
Bsh1236I	CGCG	7 cut(s)	299, 350, 371, 414, 422, 622, 635
Bsh1285I	CGRYCG	1 cut(s)	464
BshFI	GGCC	4 cut(s)	248, 269, 463, 605
BshNI	GGYRCC	1 cut(s)	167
BsiEI	CGRYCG	1 cut(s)	464
BsiSI	CCGG	5 cut(s)	135, 388, 460, 464, 518
BslFI	GGGAC	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	125
BsmBI	CGTCTC	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	4 cut(s)	248, 269, 463, 605
Bsp1286I	GDGCHC	1 cut(s)	518
Bsp143I	GATC	2 cut(s)	191, 280
Bsp1720I	GCTNAGC	1 cut(s)	512
Bsp68I	TCGCGA	1 cut(s)	635
BspANI	GGCC	4 cut(s)	248, 269, 463, 605
BspCNI	CTCAG	1 cut(s)	504
BspFNI	CGCG	7 cut(s)	299, 350, 371, 414, 422, 622, 635
BspLI	GGNNCC	1 cut(s)	169
BspPI	GGATC	2 cut(s)	186, 275
BspQI	GCTCTTC	1 cut(s)	386
BspT107I	GGYRCC	1 cut(s)	167
BsrBI	CCGCTC	1 cut(s)	382
BsrFI	RCCGGY	2 cut(s)	459, 463
BssAI	RCCGGY	2 cut(s)	459, 463
BssECI	CCNNGG	4 cut(s)	163, 331, 620, 655
BssMI	GATC	2 cut(s)	191, 280
BssNI	GRCGYC	4 cut(s)	168, 291, 327, 357
BssT1I	CCWWGG	2 cut(s)	331, 655
Bst6I	CTCTTC	2 cut(s)	77, 386
BstACI	GRCGYC	4 cut(s)	168, 291, 327, 357
BstC8I	GCNNGC	4 cut(s)	435, 465, 542, 627
BstDEI	CTNAG	2 cut(s)	512, 585
BstDSI	CCRYGG	1 cut(s)	620
BstF5I	GGATG	3 cut(s)	75, 138, 303
BstFNI	CGCG	7 cut(s)	299, 350, 371, 414, 422, 622, 635
BstH2I	RGCGCY	3 cut(s)	154, 171, 647
BstHHI	GCGC	8 cut(s)	153, 170, 301, 352, 373, 414, 424, 646
BstKTI	GATC	2 cut(s)	194, 283
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	2 cut(s)	191, 280
BstMCI	CGRYCG	1 cut(s)	464
BstSCI	CCNGG	1 cut(s)	516
BstUI	CGCG	7 cut(s)	299, 350, 371, 414, 422, 622, 635
BstV2I	GAAGAC	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BstZI	CGGCCG	1 cut(s)	461
BsuRI	GGCC	4 cut(s)	248, 269, 463, 605
BtgI	CCRYGG	1 cut(s)	620
BtgZI	GCGATG	1 cut(s)	256
BtsCI	GGATG	3 cut(s)	75, 138, 303
BtuMI	TCGCGA	1 cut(s)	635
Cac8I	GCNNGC	4 cut(s)	435, 465, 542, 627
CfoI	GCGC	8 cut(s)	153, 170, 301, 352, 373, 414, 424, 646
Cfr10I	RCCGGY	2 cut(s)	459, 463
Cfr13I	GGNCC	2 cut(s)	247, 649
Cfr42I	CCGCGG	1 cut(s)	623
CseI	GACGC	4 cut(s)	299, 335, 365, 428
DdeI	CTNAG	2 cut(s)	512, 585
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	2 cut(s)	193, 282
DpnII	GATC	2 cut(s)	191, 280
EaeI	YGGCCR	1 cut(s)	461
EagI	CGGCCG	1 cut(s)	461
Eam1104I	CTCTTC	2 cut(s)	77, 386
EarI	CTCTTC	2 cut(s)	77, 386
EciI	GGCGGA	4 cut(s)	101, 184, 214, 452
EclXI	CGGCCG	1 cut(s)	461
Eco130I	CCWWGG	2 cut(s)	331, 655
Eco147I	AGGCCT	1 cut(s)	605
Eco24I	GRGCYC	1 cut(s)	518
Eco47I	GGWCC	1 cut(s)	649
Eco52I	CGGCCG	1 cut(s)	461
EcoO109I	RGGNCCY	1 cut(s)	247
EcoT14I	CCWWGG	2 cut(s)	331, 655
EcoT38I	GRGCYC	1 cut(s)	518
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
ErhI	CCWWGG	2 cut(s)	331, 655
Esp3I	CGTCTC	1 cut(s)	125
FaiI	YATR	2 cut(s)	558, 597
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FaqI	GGGAC	1 cut(s)	71
FauI	CCCGC	2 cut(s)	387, 426
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	6 cut(s)	228, 294, 297, 415, 620, 623
FokI	GGATG	3 cut(s)	62, 125, 290
FriOI	GRGCYC	1 cut(s)	518
Fsp4HI	GCNGC	6 cut(s)	228, 294, 297, 415, 620, 623
FspBI	CTAG	2 cut(s)	44, 317
GlaI	GCGC	8 cut(s)	152, 169, 300, 351, 372, 413, 423, 645
GluI	GCNGC	6 cut(s)	228, 294, 297, 415, 620, 623
GsaI	CCCAGC	2 cut(s)	175, 548
HaeII	RGCGCY	3 cut(s)	154, 171, 647
HaeIII	GGCC	4 cut(s)	248, 269, 463, 605
HapII	CCGG	5 cut(s)	135, 388, 460, 464, 518
HgaI	GACGC	4 cut(s)	299, 335, 365, 428
HhaI	GCGC	8 cut(s)	153, 170, 301, 352, 373, 414, 424, 646
Hin1I	GRCGYC	4 cut(s)	168, 291, 327, 357
Hin6I	GCGC	8 cut(s)	151, 168, 299, 350, 371, 412, 422, 644
HinP1I	GCGC	8 cut(s)	151, 168, 299, 350, 371, 412, 422, 644
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	5 cut(s)	96, 336, 476, 496, 613
HpaII	CCGG	5 cut(s)	135, 388, 460, 464, 518
HphI	GGTGA	1 cut(s)	517
Hpy166II	GTNNAC	2 cut(s)	19, 475
Hpy188I	TCNGA	2 cut(s)	12, 41
Hpy188III	TCNNGA	4 cut(s)	278, 323, 340, 634
Hpy8I	GTNNAC	2 cut(s)	19, 475
HpyAV	CCTTC	2 cut(s)	583, 631
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	1 cut(s)	540
HpyF3I	CTNAG	2 cut(s)	512, 585
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	4 cut(s)	168, 291, 327, 357
HspAI	GCGC	8 cut(s)	151, 168, 299, 350, 371, 412, 422, 644
KasI	GGCGCC	1 cut(s)	167
KroI	GCCGGC	1 cut(s)	463
KroNI	GCCGGC	1 cut(s)	465
KspI	CCGCGG	1 cut(s)	623
Kzo9I	GATC	2 cut(s)	191, 280
LguI	GCTCTTC	1 cut(s)	386
LmnI	GCTCC	1 cut(s)	180
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	2 cut(s)	44, 317
MaeII	ACGT	1 cut(s)	84
MalI	GATC	2 cut(s)	193, 282
MbiI	CCGCTC	1 cut(s)	382
MboI	GATC	2 cut(s)	191, 280
MboII	GAAGA	6 cut(s)	58, 64, 403, 577, 580, 622
MflI	RGATCY	1 cut(s)	191
MhlI	GDGCHC	1 cut(s)	518
Mly113I	GGCGCC	1 cut(s)	168
MlyI	GAGTC	3 cut(s)	105, 470, 490
MroNI	GCCGGC	1 cut(s)	463
MseI	TTAA	2 cut(s)	444, 528
MspA1I	CMGCKG	1 cut(s)	622
MspI	CCGG	5 cut(s)	135, 388, 460, 464, 518
MspR9I	CCNGG	1 cut(s)	518
MvnI	CGCG	7 cut(s)	299, 350, 371, 414, 422, 622, 635
NaeI	GCCGGC	1 cut(s)	465
NarI	GGCGCC	1 cut(s)	168
NciI	CCSGG	1 cut(s)	518
NdeII	GATC	2 cut(s)	191, 280
NgoMIV	GCCGGC	1 cut(s)	463
NlaIV	GGNNCC	1 cut(s)	169
NmeAIII	GCCGAG	1 cut(s)	144
NruI	TCGCGA	1 cut(s)	635
PceI	AGGCCT	1 cut(s)	605
PciSI	GCTCTTC	1 cut(s)	386
PcsI	WCGNNNNNNNCGW	4 cut(s)	60, 258, 360, 414
PdiI	GCCGGC	1 cut(s)	465
PfeI	GAWTC	2 cut(s)	336, 613
PflFI	GACNNNGTC	1 cut(s)	479
PkrI	GCNGC	6 cut(s)	229, 295, 298, 416, 621, 624
PleI	GAGTC	3 cut(s)	104, 470, 490
PluTI	GGCGCC	1 cut(s)	171
PpsI	GAGTC	3 cut(s)	104, 470, 490
PspFI	CCCAGC	2 cut(s)	171, 544
PspN4I	GGNNCC	1 cut(s)	169
PspPI	GGNCC	2 cut(s)	247, 649
PsuI	RGATCY	1 cut(s)	191
PsyI	GACNNNGTC	1 cut(s)	479
RruI	TCGCGA	1 cut(s)	635
SacII	CCGCGG	1 cut(s)	623
SapI	GCTCTTC	1 cut(s)	386
SaqAI	TTAA	2 cut(s)	444, 528
SatI	GCNGC	6 cut(s)	228, 294, 297, 415, 620, 623
Sau3AI	GATC	2 cut(s)	191, 280
Sau96I	GGNCC	2 cut(s)	247, 649
SchI	GAGTC	3 cut(s)	105, 470, 490
ScrFI	CCNGG	1 cut(s)	518
SduI	GDGCHC	1 cut(s)	518
SetI	ASST	7 cut(s)	87, 111, 177, 212, 322, 347, 513
SfaNI	GCATC	1 cut(s)	147
SfoI	GGCGCC	1 cut(s)	169
Sfr303I	CCGCGG	1 cut(s)	623
SgrBI	CCGCGG	1 cut(s)	623
SinI	GGWCC	1 cut(s)	649
SpeI	ACTAGT	1 cut(s)	43
SseBI	AGGCCT	1 cut(s)	605
SspDI	GGCGCC	1 cut(s)	167
SspMI	CTAG	2 cut(s)	44, 317
StuI	AGGCCT	1 cut(s)	605
StyD4I	CCNGG	1 cut(s)	516
StyI	CCWWGG	2 cut(s)	331, 655
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	7 cut(s)	252, 279, 324, 354, 363, 452, 486
TaqII	GACCGA	1 cut(s)	469
TauI	GCSGC	6 cut(s)	230, 296, 299, 417, 622, 625
TfiI	GAWTC	2 cut(s)	336, 613
Tru1I	TTAA	2 cut(s)	444, 528
Tru9I	TTAA	2 cut(s)	444, 528
TspDTI	ATGAA	2 cut(s)	64, 470
TspGWI	ACGGA	2 cut(s)	107, 590
Tth111I	GACNNNGTC	1 cut(s)	479
VpaK11BI	GGWCC	1 cut(s)	649
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	2 cut(s)	44, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.