Rroxscaffold_4G00298550

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0004173
Physical Location & Seq
Forward (+)
18365869 .. 18367359
1491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00298550.1

Sequence Viewer

Length: 300 bp
ATGCAGTTGGCGTTGGCTTTTACCCTAGGCAAATCCGGCATCCAATCCAAGAGCCACTTCGTCCTCGACGCCCGGCTCCTCGACCAAGCCGGATCCGCCGCCTCCCTCTCCAAGCAAGCCCTTGACGAAGCCAACAAGGCCAGTGCCCTTGATCCCAAAGACGCCGCCGCTCACATCCTCAAAGCCCTCGCTCTCGACGCCCGGGGCTTCAAGACCTCCTCCCTCGACGTCGCGCTCTCCCCACCCAAGGCGTCAATGCGCCATTCCATTCCAGCTCCCAAAACTCCATTAAAGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_2 TPR_8

Protein Analysis

99

Amino Acids

10.29

Weight (kDa)

9.82

Isoelectric Point (pI)

30.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 231
AccBSI CCGCTC 1 cut(s) 170
AccII CGCG 1 cut(s) 233
AciI CCGC 4 cut(s) 96, 99, 165, 168
AclWI GGATC 3 cut(s) 87, 100, 146
AcyI GRCGYC 5 cut(s) 69, 162, 198, 228, 251
AfiI CCNNNNNNNGG 1 cut(s) 247
AgsI TTSAA 1 cut(s) 211
AjuI GAANNNNNNNTTGG 2 cut(s) 41, 73
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
AlwI GGATC 3 cut(s) 87, 100, 146
Ama87I CYCGRG 1 cut(s) 201
AoxI GGCC 1 cut(s) 138
AspA2I CCTAGG 1 cut(s) 25
AspLEI GCGC 2 cut(s) 235, 261
AsuC2I CCSGG 3 cut(s) 73, 202, 203
AvaI CYCGRG 1 cut(s) 201
AvrII CCTAGG 1 cut(s) 25
BaeGI GKGCMC 1 cut(s) 148
BamHI GGATCC 1 cut(s) 92
BcnI CCSGG 3 cut(s) 73, 202, 203
BfaI CTAG 1 cut(s) 26
BglI GCCNNNNNGGC 1 cut(s) 137
BisI GCNGC 3 cut(s) 99, 165, 168
BlnI CCTAGG 1 cut(s) 25
BlsI GCNGC 3 cut(s) 100, 166, 169
Bme1390I CCNGG 3 cut(s) 73, 202, 203
BmeT110I CYCGRG 1 cut(s) 201
BmiI GGNNCC 2 cut(s) 77, 94
BmrFI CCNGG 3 cut(s) 73, 202, 203
BmsI GCATC 1 cut(s) 48
BpuMI CCSGG 3 cut(s) 73, 202, 203
BsaHI GRCGYC 5 cut(s) 69, 162, 198, 228, 251
BsaJI CCNNGG 4 cut(s) 25, 201, 202, 246
Bsc4I CCNNNNNNNGG 1 cut(s) 247
Bse1I ACTGG 1 cut(s) 141
BseDI CCNNGG 4 cut(s) 25, 201, 202, 246
BseGI GGATG 2 cut(s) 39, 174
BseLI CCNNNNNNNGG 1 cut(s) 247
BseNI ACTGG 1 cut(s) 141
BseRI GAGGAG 2 cut(s) 68, 208
BseSI GKGCMC 1 cut(s) 148
Bsh1236I CGCG 1 cut(s) 233
BshFI GGCC 1 cut(s) 140
BsiHKCI CYCGRG 1 cut(s) 201
BsiSI CCGG 4 cut(s) 36, 73, 90, 202
BslI CCNNNNNNNGG 1 cut(s) 247
BsnI GGCC 1 cut(s) 140
BsoBI CYCGRG 1 cut(s) 201
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 2 cut(s) 92, 151
BspACI CCGC 4 cut(s) 96, 99, 165, 168
BspANI GGCC 1 cut(s) 140
BspFNI CGCG 1 cut(s) 233
BspLI GGNNCC 2 cut(s) 77, 94
BspPI GGATC 3 cut(s) 87, 100, 146
BsrBI CCGCTC 1 cut(s) 170
BsrI ACTGG 1 cut(s) 141
BssECI CCNNGG 4 cut(s) 25, 201, 202, 246
BssMI GATC 2 cut(s) 92, 151
BssNI GRCGYC 5 cut(s) 69, 162, 198, 228, 251
BssT1I CCWWGG 2 cut(s) 25, 246
BstACI GRCGYC 5 cut(s) 69, 162, 198, 228, 251
BstC8I GCNNGC 1 cut(s) 117
BstF5I GGATG 2 cut(s) 39, 174
BstFNI CGCG 1 cut(s) 233
BstHHI GCGC 2 cut(s) 235, 261
BstKTI GATC 2 cut(s) 95, 154
BstMBI GATC 2 cut(s) 92, 151
BstMWI GCNNNNNNNGC 4 cut(s) 36, 95, 137, 197
BstSCI CCNGG 3 cut(s) 71, 200, 201
BstSLI GKGCMC 1 cut(s) 148
BstUI CGCG 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
BsuRI GGCC 1 cut(s) 140
BtsCI GGATG 2 cut(s) 39, 174
BtsIMutI CAGTG 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 117
CfoI GCGC 2 cut(s) 235, 261
Cfr9I CCCGGG 1 cut(s) 201
CseI GACGC 4 cut(s) 77, 170, 206, 240
DpnI GATC 2 cut(s) 94, 153
DpnII GATC 2 cut(s) 92, 151
EciI GGCGGA 1 cut(s) 85
Eco130I CCWWGG 2 cut(s) 25, 246
Eco88I CYCGRG 1 cut(s) 201
EcoT14I CCWWGG 2 cut(s) 25, 246
ErhI CCWWGG 2 cut(s) 25, 246
FalI AAGNNNNNCTT 2 cut(s) 41, 73
Fnu4HI GCNGC 3 cut(s) 99, 165, 168
FokI GGATG 2 cut(s) 26, 161
Fsp4HI GCNGC 3 cut(s) 99, 165, 168
FspBI CTAG 1 cut(s) 26
GlaI GCGC 2 cut(s) 234, 260
GluI GCNGC 3 cut(s) 99, 165, 168
HaeIII GGCC 1 cut(s) 140
HapII CCGG 4 cut(s) 36, 73, 90, 202
HgaI GACGC 4 cut(s) 77, 170, 206, 240
HhaI GCGC 2 cut(s) 235, 261
Hin1I GRCGYC 5 cut(s) 69, 162, 198, 228, 251
Hin6I GCGC 2 cut(s) 233, 259
HinP1I GCGC 2 cut(s) 233, 259
HpaII CCGG 4 cut(s) 36, 73, 90, 202
Hpy188III TCNNGA 2 cut(s) 194, 211
Hpy99I CGWCG 4 cut(s) 71, 200, 230, 233
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 4 cut(s) 36, 95, 137, 197
HpySE526I ACGT 1 cut(s) 228
Hsp92I GRCGYC 5 cut(s) 69, 162, 198, 228, 251
HspAI GCGC 2 cut(s) 233, 259
Kzo9I GATC 2 cut(s) 92, 151
LmnI GCTCC 2 cut(s) 81, 280
LpnPI CCDG 6 cut(s) 49, 86, 103, 154, 215, 285
LweI GCATC 1 cut(s) 48
MaeI CTAG 1 cut(s) 26
MaeII ACGT 1 cut(s) 228
MalI GATC 2 cut(s) 94, 153
MbiI CCGCTC 1 cut(s) 170
MboI GATC 2 cut(s) 92, 151
MflI RGATCY 1 cut(s) 92
MhlI GDGCHC 1 cut(s) 148
MnlI CCTC 9 cut(s) 74, 89, 112, 116, 188, 197, 226, 229, 233
MseI TTAA 2 cut(s) 290, 298
MspI CCGG 4 cut(s) 36, 73, 90, 202
MspR9I CCNGG 3 cut(s) 73, 202, 203
MvnI CGCG 1 cut(s) 233
MwoI GCNNNNNNNGC 4 cut(s) 36, 95, 137, 197
NciI CCSGG 3 cut(s) 73, 202, 203
NdeII GATC 2 cut(s) 92, 151
NlaIV GGNNCC 2 cut(s) 77, 94
PkrI GCNGC 3 cut(s) 100, 166, 169
PspN4I GGNNCC 2 cut(s) 77, 94
PsuI RGATCY 1 cut(s) 92
SaqAI TTAA 2 cut(s) 290, 298
SatI GCNGC 3 cut(s) 99, 165, 168
Sau3AI GATC 2 cut(s) 92, 151
ScrFI CCNGG 3 cut(s) 73, 202, 203
SduI GDGCHC 1 cut(s) 148
SetI ASST 3 cut(s) 218, 231, 277
SfaNI GCATC 1 cut(s) 48
SmaI CCCGGG 1 cut(s) 203
SsiI CCGC 4 cut(s) 96, 99, 165, 168
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 3 cut(s) 71, 200, 201
StyI CCWWGG 2 cut(s) 25, 246
TaiI ACGT 1 cut(s) 231
TaqI TCGA 4 cut(s) 66, 81, 195, 225
TauI GCSGC 3 cut(s) 101, 167, 170
Tru1I TTAA 2 cut(s) 290, 298
Tru9I TTAA 2 cut(s) 290, 298
TscAI CASTG 1 cut(s) 148
TspMI CCCGGG 1 cut(s) 201
TspRI CASTG 1 cut(s) 148
XmaI CCCGGG 1 cut(s) 201
XmaJI CCTAGG 1 cut(s) 25
XspI CTAG 1 cut(s) 26
ZraI GACGTC 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.