Tetratricopeptide repeat
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G65520 |
| fragaria_vesca | FvH4_1g19520 FvH4_5g34561 FvH4_5g34561 FvH4_5g34561 FvH4_5g34561 FvH4_5g34561 |
| malus_domestica | MD08G1200200.v1.1 MD15G1310800.v1.1 MD15G1387400.v1.1 |
| prunus_persica | Prupe.1G533800_v2.0.a1 Prupe.6G203100_v2.0.a1 |
| pyrus_communis | pycom01g06830 pycom08g17360 pycom15g34740 |
| rosa_chinensis | RchiOBHm_Chr2g0111021 RchiOBHm_Chr7g0235251 |
| rosa_laevigata | RLG00000017858 |
| rosa_multiflora | Rmu_sc0003994.1_g000008 Rmu_sc0004637.1_g000006 Rmu_sc0004657.1_g000046 Rmu_sc0005947.1_g000017 |
| rosa_roxburghii | Rroxscaffold_3G00226160 Rroxscaffold_4G00298550 Rroxscaffold_7G00215170 |
| rosa_rugosa | Rorug02G0170600 Rorug07G0289300 |
| rosa_samantha | Rh2AG222600 Rh2BG234700 Rh2CG226000 Rh2DG230500 |
| rosa_wichuraiana | Rw2G017200 Rw7G036900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 238 |
| AccBSI | CCGCTC | 1 cut(s) | 359 |
| AciI | CCGC | 5 cut(s) | 108, 118, 344, 357, 443 |
| AclWI | GGATC | 2 cut(s) | 128, 270 |
| AfaI | GTAC | 1 cut(s) | 65 |
| AgsI | TTSAA | 3 cut(s) | 35, 401, 440 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 215, 247 |
| AluBI | AGCT | 3 cut(s) | 55, 308, 380 |
| AluI | AGCT | 3 cut(s) | 55, 308, 380 |
| AlwI | GGATC | 2 cut(s) | 128, 270 |
| Ama87I | CYCGRG | 1 cut(s) | 390 |
| AoxI | GGCC | 1 cut(s) | 327 |
| AsuC2I | CCSGG | 3 cut(s) | 243, 391, 392 |
| AsuHPI | GGTGA | 1 cut(s) | 261 |
| AvaI | CYCGRG | 1 cut(s) | 390 |
| BanI | GGYRCC | 1 cut(s) | 238 |
| BccI | CCATC | 3 cut(s) | 338, 348, 429 |
| BcnI | CCSGG | 3 cut(s) | 243, 391, 392 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 326 |
| BglII | AGATCT | 1 cut(s) | 127 |
| BisI | GCNGC | 1 cut(s) | 357 |
| BlsI | GCNGC | 1 cut(s) | 358 |
| Bme1390I | CCNGG | 3 cut(s) | 243, 391, 392 |
| BmeT110I | CYCGRG | 1 cut(s) | 390 |
| BmiI | GGNNCC | 2 cut(s) | 240, 247 |
| BmrFI | CCNGG | 3 cut(s) | 243, 391, 392 |
| BmsI | GCATC | 1 cut(s) | 407 |
| Bpu10I | CCTNAGC | 1 cut(s) | 376 |
| BpuMI | CCSGG | 3 cut(s) | 243, 391, 392 |
| BsaJI | CCNNGG | 4 cut(s) | 155, 234, 390, 391 |
| Bse3DI | GCAATG | 1 cut(s) | 214 |
| BseDI | CCNNGG | 4 cut(s) | 155, 234, 390, 391 |
| BseGI | GGATG | 3 cut(s) | 230, 340, 363 |
| BseMI | GCAATG | 1 cut(s) | 214 |
| BseRI | GAGGAG | 2 cut(s) | 191, 238 |
| BshFI | GGCC | 1 cut(s) | 329 |
| BshNI | GGYRCC | 1 cut(s) | 238 |
| BsiHKCI | CYCGRG | 1 cut(s) | 390 |
| BsiSI | CCGG | 3 cut(s) | 243, 260, 391 |
| BsnI | GGCC | 1 cut(s) | 329 |
| BsoBI | CYCGRG | 1 cut(s) | 390 |
| Bsp1407I | TGTACA | 1 cut(s) | 63 |
| Bsp143I | GATC | 3 cut(s) | 120, 127, 262 |
| BspACI | CCGC | 5 cut(s) | 108, 118, 344, 357, 443 |
| BspANI | GGCC | 1 cut(s) | 329 |
| BspLI | GGNNCC | 2 cut(s) | 240, 247 |
| BspPI | GGATC | 2 cut(s) | 128, 270 |
| BspT107I | GGYRCC | 1 cut(s) | 238 |
| BsrBI | CCGCTC | 1 cut(s) | 359 |
| BsrDI | GCAATG | 1 cut(s) | 214 |
| BsrGI | TGTACA | 1 cut(s) | 63 |
| BssECI | CCNNGG | 4 cut(s) | 155, 234, 390, 391 |
| BssMI | GATC | 3 cut(s) | 120, 127, 262 |
| Bst4CI | ACNGT | 1 cut(s) | 63 |
| BstAUI | TGTACA | 1 cut(s) | 63 |
| BstC8I | GCNNGC | 1 cut(s) | 306 |
| BstDEI | CTNAG | 1 cut(s) | 376 |
| BstF5I | GGATG | 3 cut(s) | 230, 340, 363 |
| BstKTI | GATC | 3 cut(s) | 123, 130, 265 |
| BstMBI | GATC | 3 cut(s) | 120, 127, 262 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 326 |
| BstSCI | CCNGG | 3 cut(s) | 241, 389, 390 |
| BstX2I | RGATCY | 2 cut(s) | 127, 262 |
| BstYI | RGATCY | 2 cut(s) | 127, 262 |
| BsuRI | GGCC | 1 cut(s) | 329 |
| BtsCI | GGATG | 3 cut(s) | 230, 340, 363 |
| Cac8I | GCNNGC | 1 cut(s) | 306 |
| Cfr9I | CCCGGG | 1 cut(s) | 390 |
| Csp6I | GTAC | 1 cut(s) | 64 |
| CviQI | GTAC | 1 cut(s) | 64 |
| DdeI | CTNAG | 1 cut(s) | 376 |
| DpnI | GATC | 3 cut(s) | 122, 129, 264 |
| DpnII | GATC | 3 cut(s) | 120, 127, 262 |
| EciI | GGCGGA | 1 cut(s) | 133 |
| Eco88I | CYCGRG | 1 cut(s) | 390 |
| FaiI | YATR | 3 cut(s) | 197, 215, 217 |
| FauNDI | CATATG | 1 cut(s) | 215 |
| Fnu4HI | GCNGC | 1 cut(s) | 357 |
| FokI | GGATG | 3 cut(s) | 217, 327, 350 |
| Fsp4HI | GCNGC | 1 cut(s) | 357 |
| GluI | GCNGC | 1 cut(s) | 357 |
| HaeIII | GGCC | 1 cut(s) | 329 |
| HapII | CCGG | 3 cut(s) | 243, 260, 391 |
| HinfI | GANTC | 1 cut(s) | 386 |
| HpaII | CCGG | 3 cut(s) | 243, 260, 391 |
| HphI | GGTGA | 1 cut(s) | 261 |
| Hpy188III | TCNNGA | 4 cut(s) | 168, 311, 383, 401 |
| Hpy99I | CGWCG | 1 cut(s) | 317 |
| HpyAV | CCTTC | 2 cut(s) | 175, 319 |
| HpyCH4III | ACNGT | 1 cut(s) | 63 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 326 |
| HpyF3I | CTNAG | 1 cut(s) | 376 |
| Kzo9I | GATC | 3 cut(s) | 120, 127, 262 |
| LmnI | GCTCC | 1 cut(s) | 251 |
| LpnPI | CCDG | 3 cut(s) | 256, 273, 404 |
| LweI | GCATC | 1 cut(s) | 407 |
| MalI | GATC | 3 cut(s) | 122, 129, 264 |
| MbiI | CCGCTC | 1 cut(s) | 359 |
| MboI | GATC | 3 cut(s) | 120, 127, 262 |
| MboII | GAAGA | 1 cut(s) | 428 |
| MflI | RGATCY | 2 cut(s) | 127, 262 |
| MluCI | AATT | 3 cut(s) | 30, 187, 276 |
| MlyI | GAGTC | 1 cut(s) | 380 |
| MmeI | TCCRAC | 1 cut(s) | 164 |
| MnlI | CCTC | 9 cut(s) | 145, 165, 169, 244, 259, 282, 299, 343, 416 |
| MseI | TTAA | 1 cut(s) | 369 |
| MspI | CCGG | 3 cut(s) | 243, 260, 391 |
| MspR9I | CCNGG | 3 cut(s) | 243, 391, 392 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 326 |
| NciI | CCSGG | 3 cut(s) | 243, 391, 392 |
| NdeI | CATATG | 1 cut(s) | 215 |
| NdeII | GATC | 3 cut(s) | 120, 127, 262 |
| NlaIV | GGNNCC | 2 cut(s) | 240, 247 |
| NmeAIII | GCCGAG | 3 cut(s) | 136, 215, 346 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 318, 421 |
| PkrI | GCNGC | 1 cut(s) | 358 |
| PleI | GAGTC | 1 cut(s) | 380 |
| PpsI | GAGTC | 1 cut(s) | 380 |
| PspN4I | GGNNCC | 2 cut(s) | 240, 247 |
| PsuI | RGATCY | 2 cut(s) | 127, 262 |
| RsaI | GTAC | 1 cut(s) | 65 |
| RsaNI | GTAC | 1 cut(s) | 64 |
| SaqAI | TTAA | 1 cut(s) | 369 |
| SatI | GCNGC | 1 cut(s) | 357 |
| Sau3AI | GATC | 3 cut(s) | 120, 127, 262 |
| SchI | GAGTC | 1 cut(s) | 380 |
| ScrFI | CCNGG | 3 cut(s) | 243, 391, 392 |
| SetI | ASST | 8 cut(s) | 57, 72, 274, 291, 310, 354, 382, 408 |
| SfaNI | GCATC | 1 cut(s) | 407 |
| SmaI | CCCGGG | 1 cut(s) | 392 |
| Sse9I | AATT | 3 cut(s) | 30, 187, 276 |
| SsiI | CCGC | 5 cut(s) | 108, 118, 344, 357, 443 |
| StyD4I | CCNGG | 3 cut(s) | 241, 389, 390 |
| TaaI | ACNGT | 1 cut(s) | 63 |
| TaqI | TCGA | 6 cut(s) | 148, 167, 312, 384, 415, 424 |
| TasI | AATT | 3 cut(s) | 30, 187, 276 |
| TatI | WGTACW | 1 cut(s) | 63 |
| TauI | GCSGC | 1 cut(s) | 359 |
| Tru1I | TTAA | 1 cut(s) | 369 |
| Tru9I | TTAA | 1 cut(s) | 369 |
| TspDTI | ATGAA | 1 cut(s) | 42 |
| TspGWI | ACGGA | 1 cut(s) | 240 |
| TspMI | CCCGGG | 1 cut(s) | 390 |
| XmaI | CCCGGG | 1 cut(s) | 390 |