Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004173

Physical Location & Seq

Genomic Coordinates Reverse (-)

17555165 .. 17555896

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g17360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGATTTCCTTCAATCCCAACTCCGATACATCAATTCCCAAACAGAGGAATCGGCACCGATCGATAAGTCCCGAATCGTGAAGGACATTCTCCTCCAAGCCGGCCTAATCCTCTTCGTCGTCATCGCCTTCCTCACCATCAACAACATCCCCCAGAAGCTCTTCGCCAAACTCCGTTACCGCTTCCGTAACAAAACCGCCGCCCGGGCCAAGCGCCACTTCGTCCTCGGCGCCCAGCTCCTCGCCCAGTCCCGATCTGCCGACTCCCTCTCCTCCTCCGCCTCCGCCTCCGCCTCCCTCTCCCAGCAGGCCCTCGACGAGGCCGAAAAGGCCATCGCGCTCGTCCCCAAGGACGCCGCCGCCCACATCCTCAAATCCCTCGCCCTCGACGCCCAGGGATACAAGACCTCCGCACTCGACGCCATCGATGTCGCGCTTTCCCCTCTCTGCCGCAAGAGCCTGACCGACGAGGAGCGCGGCGATGCGCTCGTCAAGAGGGCGGAGATCATGCTGTCGATGAACCAGAAAGCCCAGGTTGACCCGGTGATTGAGGATTTGAATCGGGCTGTGGAGCTGAGTCCGGAGAATGTGAAGGCGTTTTGTACGTTGGGAGAGTGCTACGAGGGGAAGAAGATGACGGAGGAGGCCAGGAAGGCTTACGAGGCGGCGCTGAGGGTACAGCCCAGATTGAAAGCCGCCATGGACGCTCTCGAACGACTCGGTTCGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2 TPR_8

Protein Analysis

244

Amino Acids

26.67

Weight (kDa)

8.9

Isoelectric Point (pI)

52.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65520
fragaria_vesca	FvH4_1g19520 FvH4_5g34561 FvH4_5g34561 FvH4_5g34561 FvH4_5g34561 FvH4_5g34561
malus_domestica	MD08G1200200.v1.1 MD15G1310800.v1.1 MD15G1387400.v1.1
prunus_persica	Prupe.1G533800_v2.0.a1 Prupe.6G203100_v2.0.a1
pyrus_communis	pycom01g06830 pycom08g17360 pycom15g34740
rosa_chinensis	RchiOBHm_Chr2g0111021 RchiOBHm_Chr7g0235251
rosa_laevigata	RLG00000017858
rosa_multiflora	Rmu_sc0003994.1_g000008 Rmu_sc0004637.1_g000006 Rmu_sc0004657.1_g000046 Rmu_sc0005947.1_g000017
rosa_roxburghii	Rroxscaffold_3G00226160 Rroxscaffold_4G00298550 Rroxscaffold_7G00215170
rosa_rugosa	Rorug02G0170600 Rorug07G0289300
rosa_samantha	Rh2AG222600 Rh2BG234700 Rh2CG226000 Rh2DG230500
rosa_wichuraiana	Rw2G017200 Rw7G036900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	55, 230
AccII	CGCG	3 cut(s)	338, 434, 477
AccIII	TCCGGA	1 cut(s)	580
AcyI	GRCGYC	4 cut(s)	231, 354, 390, 420
AfaI	GTAC	2 cut(s)	604, 678
AfiI	CCNNNNNNNGG	3 cut(s)	46, 204, 319
AgsI	TTSAA	3 cut(s)	14, 559, 691
AjnI	CCWGG	3 cut(s)	393, 531, 647
AjuI	GAANNNNNNNTTGG	2 cut(s)	203, 235
AluBI	AGCT	3 cut(s)	160, 238, 574
AluI	AGCT	3 cut(s)	160, 238, 574
Ama87I	CYCGRG	1 cut(s)	204
Aor13HI	TCCGGA	1 cut(s)	580
AoxI	GGCC	6 cut(s)	103, 207, 309, 321, 330, 645
Asp700I	GAANNNNTTC	1 cut(s)	161
AspLEI	GCGC	7 cut(s)	216, 233, 340, 436, 477, 487, 670
AspS9I	GGNCC	2 cut(s)	207, 310
AsuC2I	CCSGG	3 cut(s)	205, 206, 542
AsuHPI	GGTGA	2 cut(s)	127, 556
AvaI	CYCGRG	1 cut(s)	204
BanI	GGYRCC	2 cut(s)	55, 230
BbvCI	CCTCAGC	1 cut(s)	671
BccI	CCATC	3 cut(s)	146, 341, 431
BciT130I	CCWGG	3 cut(s)	395, 533, 649
BciVI	GTATCC	1 cut(s)	392
BcnI	CCSGG	3 cut(s)	205, 206, 542
BfoI	RGCGCY	3 cut(s)	217, 234, 671
BfuI	GTATCC	1 cut(s)	392
BglI	GCCNNNNNGGC	3 cut(s)	206, 329, 653
BisI	GCNGC	7 cut(s)	201, 357, 360, 451, 478, 666, 696
BlsI	GCNGC	7 cut(s)	202, 358, 361, 452, 479, 667, 697
Bme1390I	CCNGG	6 cut(s)	205, 206, 395, 533, 542, 649
BmeT110I	CYCGRG	1 cut(s)	204
BmgT120I	GGNCC	2 cut(s)	207, 310
BmiI	GGNNCC	2 cut(s)	57, 232
BmrFI	CCNGG	6 cut(s)	205, 206, 395, 533, 542, 649
BmrI	ACTGGG	1 cut(s)	241
BmsI	GCATC	1 cut(s)	472
BmuI	ACTGGG	1 cut(s)	241
Bpu10I	CCTNAGC	1 cut(s)	671
BpuMI	CCSGG	3 cut(s)	205, 206, 542
Bsa29I	ATCGAT	2 cut(s)	63, 426
BsaBI	GATNNNNATC	1 cut(s)	558
BsaHI	GRCGYC	4 cut(s)	231, 354, 390, 420
BsaJI	CCNNGG	7 cut(s)	204, 226, 348, 393, 394, 531, 699
BsaWI	WCCGGW	1 cut(s)	580
BsaXI	ACNNNNNCTCC	4 cut(s)	254, 284, 392, 422
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 204, 319
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	247
Bse8I	GATNNNNATC	1 cut(s)	558
BseAI	TCCGGA	1 cut(s)	580
BseBI	CCWGG	3 cut(s)	395, 533, 649
BseCI	ATCGAT	2 cut(s)	63, 426
BseDI	CCNNGG	7 cut(s)	204, 226, 348, 393, 394, 531, 699
BseGI	GGATG	2 cut(s)	147, 366
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	3 cut(s)	46, 204, 319
BseMII	CTCAG	2 cut(s)	566, 662
BseNI	ACTGG	1 cut(s)	247
BseRI	GAGGAG	6 cut(s)	83, 230, 262, 265, 485, 656
BseYI	CCCAGC	2 cut(s)	234, 303
Bsh1236I	CGCG	3 cut(s)	338, 434, 477
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	6 cut(s)	105, 209, 311, 323, 332, 647
BshNI	GGYRCC	2 cut(s)	55, 230
BshVI	ATCGAT	2 cut(s)	63, 426
BsiEI	CGRYCG	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	204
BsiSI	CCGG	4 cut(s)	102, 205, 542, 581
BslFI	GGGAC	3 cut(s)	55, 235, 329
BslI	CCNNNNNNNGG	3 cut(s)	46, 204, 319
BsmFI	GGGAC	3 cut(s)	55, 235, 329
BsnI	GGCC	6 cut(s)	105, 209, 311, 323, 332, 647
BsoBI	CYCGRG	1 cut(s)	204
Bsp13I	TCCGGA	1 cut(s)	580
Bsp143I	GATC	3 cut(s)	60, 254, 504
Bsp19I	CCATGG	1 cut(s)	699
BspANI	GGCC	6 cut(s)	105, 209, 311, 323, 332, 647
BspCNI	CTCAG	2 cut(s)	567, 663
BspDI	ATCGAT	2 cut(s)	63, 426
BspEI	TCCGGA	1 cut(s)	580
BspFNI	CGCG	3 cut(s)	338, 434, 477
BspLI	GGNNCC	2 cut(s)	57, 232
BspQI	GCTCTTC	1 cut(s)	167
BspT107I	GGYRCC	2 cut(s)	55, 230
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	247
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	7 cut(s)	204, 226, 348, 393, 394, 531, 699
BssMI	GATC	3 cut(s)	60, 254, 504
BssNI	GRCGYC	4 cut(s)	231, 354, 390, 420
BssT1I	CCWWGG	2 cut(s)	348, 699
Bst2UI	CCWGG	3 cut(s)	395, 533, 649
Bst6I	CTCTTC	2 cut(s)	119, 167
BstACI	GRCGYC	4 cut(s)	231, 354, 390, 420
BstC8I	GCNNGC	2 cut(s)	103, 309
BstDEI	CTNAG	2 cut(s)	575, 671
BstDSI	CCRYGG	1 cut(s)	699
BstENI	CCTNNNNNAGG	1 cut(s)	317
BstF5I	GGATG	2 cut(s)	147, 366
BstFNI	CGCG	3 cut(s)	338, 434, 477
BstH2I	RGCGCY	3 cut(s)	217, 234, 671
BstHHI	GCGC	7 cut(s)	216, 233, 340, 436, 477, 487, 670
BstKTI	GATC	3 cut(s)	63, 257, 507
BstMBI	GATC	3 cut(s)	60, 254, 504
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	8 cut(s)	206, 329, 389, 419, 456, 653, 662, 704
BstNI	CCWGG	3 cut(s)	395, 533, 649
BstSCI	CCNGG	6 cut(s)	203, 204, 393, 531, 540, 647
BstUI	CGCG	3 cut(s)	338, 434, 477
Bsu15I	ATCGAT	2 cut(s)	63, 426
BsuI	GTATCC	1 cut(s)	392
BsuRI	GGCC	6 cut(s)	105, 209, 311, 323, 332, 647
BsuTUI	ATCGAT	2 cut(s)	63, 426
BtgI	CCRYGG	1 cut(s)	699
BtgZI	GCGATG	3 cut(s)	109, 319, 495
BtsCI	GGATG	2 cut(s)	147, 366
Cac8I	GCNNGC	2 cut(s)	103, 309
CfoI	GCGC	7 cut(s)	216, 233, 340, 436, 477, 487, 670
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	2 cut(s)	207, 310
Cfr9I	CCCGGG	1 cut(s)	204
ClaI	ATCGAT	2 cut(s)	63, 426
CseI	GACGC	4 cut(s)	362, 398, 428, 713
Csp6I	GTAC	2 cut(s)	603, 677
CviAII	CATG	2 cut(s)	508, 700
CviQI	GTAC	2 cut(s)	603, 677
DdeI	CTNAG	2 cut(s)	575, 671
DinI	GGCGCC	1 cut(s)	232
DpnI	GATC	3 cut(s)	62, 256, 506
DpnII	GATC	3 cut(s)	60, 254, 504
Eam1104I	CTCTTC	2 cut(s)	119, 167
EarI	CTCTTC	2 cut(s)	119, 167
EciI	GGCGGA	4 cut(s)	268, 274, 280, 515
Eco130I	CCWWGG	2 cut(s)	348, 699
Eco88I	CYCGRG	1 cut(s)	204
EcoNI	CCTNNNNNAGG	1 cut(s)	317
EcoO109I	RGGNCCY	1 cut(s)	310
EcoRII	CCWGG	3 cut(s)	393, 531, 647
EcoT14I	CCWWGG	2 cut(s)	348, 699
EgeI	GGCGCC	1 cut(s)	232
EheI	GGCGCC	1 cut(s)	232
ErhI	CCWWGG	2 cut(s)	348, 699
FaeI	CATG	2 cut(s)	511, 703
FaiI	YATR	2 cut(s)	509, 701
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FaqI	GGGAC	3 cut(s)	55, 235, 329
FatI	CATG	2 cut(s)	507, 699
Fnu4HI	GCNGC	7 cut(s)	201, 357, 360, 451, 478, 666, 696
FokI	GGATG	2 cut(s)	134, 353
Fsp4HI	GCNGC	7 cut(s)	201, 357, 360, 451, 478, 666, 696
GlaI	GCGC	7 cut(s)	215, 232, 339, 435, 476, 486, 669
GluI	GCNGC	7 cut(s)	201, 357, 360, 451, 478, 666, 696
GsaI	CCCAGC	2 cut(s)	238, 307
HaeII	RGCGCY	3 cut(s)	217, 234, 671
HaeIII	GGCC	6 cut(s)	105, 209, 311, 323, 332, 647
HapII	CCGG	4 cut(s)	102, 205, 542, 581
HgaI	GACGC	4 cut(s)	362, 398, 428, 713
HhaI	GCGC	7 cut(s)	216, 233, 340, 436, 477, 487, 670
Hin1I	GRCGYC	4 cut(s)	231, 354, 390, 420
Hin1II	CATG	2 cut(s)	511, 703
Hin6I	GCGC	7 cut(s)	214, 231, 338, 434, 475, 485, 668
HinP1I	GCGC	7 cut(s)	214, 231, 338, 434, 475, 485, 668
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HinfI	GANTC	6 cut(s)	50, 75, 263, 559, 577, 717
HpaII	CCGG	4 cut(s)	102, 205, 542, 581
HphI	GGTGA	2 cut(s)	127, 556
Hpy166II	GTNNAC	1 cut(s)	538
Hpy188I	TCNGA	1 cut(s)	26
Hpy188III	TCNNGA	6 cut(s)	72, 79, 252, 493, 581, 710
Hpy8I	GTNNAC	1 cut(s)	538
Hpy99I	CGWCG	5 cut(s)	122, 320, 392, 422, 470
HpyAV	CCTTC	5 cut(s)	20, 76, 139, 586, 646
HpyCH4IV	ACGT	1 cut(s)	605
HpyF10VI	GCNNNNNNNGC	8 cut(s)	206, 329, 389, 419, 456, 653, 662, 704
HpyF3I	CTNAG	2 cut(s)	575, 671
HpySE526I	ACGT	1 cut(s)	605
Hsp92I	GRCGYC	4 cut(s)	231, 354, 390, 420
Hsp92II	CATG	2 cut(s)	511, 703
HspAI	GCGC	7 cut(s)	214, 231, 338, 434, 475, 485, 668
KasI	GGCGCC	1 cut(s)	230
Kpn2I	TCCGGA	1 cut(s)	580
KroI	GCCGGC	1 cut(s)	101
KroNI	GCCGGC	1 cut(s)	103
Kzo9I	GATC	3 cut(s)	60, 254, 504
LguI	GCTCTTC	1 cut(s)	167
LmnI	GCTCC	3 cut(s)	243, 472, 571
LweI	GCATC	1 cut(s)	472
MaeII	ACGT	1 cut(s)	605
MaeIII	GTNAC	2 cut(s)	176, 188
MalI	GATC	3 cut(s)	62, 256, 506
MboI	GATC	3 cut(s)	60, 254, 504
MboII	GAAGA	4 cut(s)	106, 154, 640, 643
MluCI	AATT	1 cut(s)	34
Mly113I	GGCGCC	1 cut(s)	231
MlyI	GAGTC	3 cut(s)	257, 586, 711
MroI	TCCGGA	1 cut(s)	580
MroNI	GCCGGC	1 cut(s)	101
MroXI	GAANNNNTTC	1 cut(s)	161
MspI	CCGG	4 cut(s)	102, 205, 542, 581
MspR9I	CCNGG	6 cut(s)	205, 206, 395, 533, 542, 649
MvaI	CCWGG	3 cut(s)	395, 533, 649
MvnI	CGCG	3 cut(s)	338, 434, 477
MwoI	GCNNNNNNNGC	8 cut(s)	206, 329, 389, 419, 456, 653, 662, 704
NaeI	GCCGGC	1 cut(s)	103
NarI	GGCGCC	1 cut(s)	231
NciI	CCSGG	3 cut(s)	205, 206, 542
NcoI	CCATGG	1 cut(s)	699
NdeII	GATC	3 cut(s)	60, 254, 504
NgoMIV	GCCGGC	1 cut(s)	101
NlaIII	CATG	2 cut(s)	511, 703
NlaIV	GGNNCC	2 cut(s)	57, 232
NmeAIII	GCCGAG	1 cut(s)	207
PasI	CCCWGGG	1 cut(s)	394
PciSI	GCTCTTC	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	2 cut(s)	321, 423
PdiI	GCCGGC	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	161
PfeI	GAWTC	3 cut(s)	50, 75, 559
PkrI	GCNGC	7 cut(s)	202, 358, 361, 452, 479, 667, 697
Ple19I	CGATCG	1 cut(s)	63
PleI	GAGTC	3 cut(s)	257, 585, 711
PluTI	GGCGCC	1 cut(s)	234
PpsI	GAGTC	3 cut(s)	257, 585, 711
Psp6I	CCWGG	3 cut(s)	393, 531, 647
PspFI	CCCAGC	2 cut(s)	234, 303
PspGI	CCWGG	3 cut(s)	393, 531, 647
PspN4I	GGNNCC	2 cut(s)	57, 232
PspPI	GGNCC	2 cut(s)	207, 310
PvuI	CGATCG	1 cut(s)	63
RsaI	GTAC	2 cut(s)	604, 678
RsaNI	GTAC	2 cut(s)	603, 677
SapI	GCTCTTC	1 cut(s)	167
SatI	GCNGC	7 cut(s)	201, 357, 360, 451, 478, 666, 696
Sau3AI	GATC	3 cut(s)	60, 254, 504
Sau96I	GGNCC	2 cut(s)	207, 310
SchI	GAGTC	3 cut(s)	257, 586, 711
ScrFI	CCNGG	6 cut(s)	205, 206, 395, 533, 542, 649
SetI	ASST	6 cut(s)	162, 240, 410, 537, 576, 608
SfaNI	GCATC	1 cut(s)	472
SfiI	GGCCNNNNNGGCC	1 cut(s)	329
SfoI	GGCGCC	1 cut(s)	232
SmaI	CCCGGG	1 cut(s)	206
SrfI	GCCCGGGC	1 cut(s)	206
Sse9I	AATT	1 cut(s)	34
SspDI	GGCGCC	1 cut(s)	230
StyD4I	CCNGG	6 cut(s)	203, 204, 393, 531, 540, 647
StyI	CCWWGG	2 cut(s)	348, 699
TaiI	ACGT	1 cut(s)	608
TaqI	TCGA	8 cut(s)	63, 315, 387, 417, 426, 515, 711, 725
TaqII	GACCGA	1 cut(s)	479
TasI	AATT	1 cut(s)	34
TauI	GCSGC	7 cut(s)	203, 359, 362, 453, 480, 668, 698
TfiI	GAWTC	3 cut(s)	50, 75, 559
TspDTI	ATGAA	1 cut(s)	533
TspGWI	ACGGA	3 cut(s)	164, 176, 653
TspMI	CCCGGG	1 cut(s)	204
XagI	CCTNNNNNAGG	1 cut(s)	317
XmaI	CCCGGG	1 cut(s)	204
XmnI	GAANNNNTTC	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.