pycom01g06830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0004173
Physical Location & Seq
Reverse (-)
7373636 .. 7374277
642 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g06830.1

Sequence Viewer

Length: 642 bp
ATGACACCAGAGGTGGTGCTGCGGATCTGCCTTCTGATCCTAACCATAGCGGTGTTCTTCGCCATACACAAACTCTCCAGAAACGCCCTCACCAAGCTCCGAACCAACAACCGAGCCAACCTCCAATCGACCCGCCACTTCATCCACGGGTCGCAGCTCCTGAACCAAGCACGGTCCACTCCCCACAAGGCCCAATCCCAGGCCCACGCCAAAAACGCCTTGATGGAGGCCGAGAAGGCGCTGTCTCTCTCGCCCAGGGATCCGGGCCCACACATCCTCAAAGCCCTATCGCTCGATCTCTTGGGGCACAAGACCTCCGCGCCGAAATCGCTTGACGCGGCCCTGTCGACGCCGTGCGTGAAGACGCTCTCTGAGAAGGAGCGCGGGGATGCTCTGGTGAAGAGGGCCGAGTTAAAGCTCGGGCTGAACCGGAGGCGGCGGGTGGACTCGGCGGTTGAAGACCTGGTGCATGCGGTCAGGCTGGGTCGGGCGGAGGGGGATGCGACGGCGTTTTGTCTGTTGGGTCAGTGTTACGAGTGGAAGAGGATGAGGGAGGAAACCAAAGAGGAATTTGAGCGGGCCTTGAGGGTTGATCCCGGGTCGGATTTGGCCTGTCAGGGCTTGGATCGGTTAGGACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

214

Amino Acids

23.63

Weight (kDa)

9.67

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 577
AccI GTMKAC 1 cut(s) 347
AccII CGCG 3 cut(s) 320, 338, 384
AclWI GGATC 6 cut(s) 31, 32, 254, 267, 587, 633
AcsI RAATTY 1 cut(s) 569
AcyI GRCGYC 1 cut(s) 350
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 1 cut(s) 458
AjnI CCWGG 3 cut(s) 198, 254, 462
AluBI AGCT 3 cut(s) 97, 157, 418
AluI AGCT 3 cut(s) 97, 157, 418
Alw26I GTCTC 1 cut(s) 249
AlwI GGATC 6 cut(s) 31, 32, 254, 267, 587, 633
AlwNI CAGNNNCTG 1 cut(s) 160
Ama87I CYCGRG 2 cut(s) 419, 596
AoxI GGCC 8 cut(s) 189, 201, 228, 265, 339, 405, 579, 609
ApaI GGGCCC 1 cut(s) 269
ApeKI GCWGC 2 cut(s) 19, 154
ApoI RAATTY 1 cut(s) 569
AspLEI GCGC 3 cut(s) 241, 322, 384
AspS9I GGNCC 9 cut(s) 174, 190, 202, 265, 266, 340, 405, 579, 635
AsuC2I CCSGG 3 cut(s) 264, 597, 598
AsuHPI GGTGA 2 cut(s) 82, 409
AvaI CYCGRG 2 cut(s) 419, 596
AvaII GGWCC 2 cut(s) 174, 635
BaeGI GKGCMC 2 cut(s) 269, 309
BamHI GGATCC 1 cut(s) 259
BanII GRGCYC 1 cut(s) 269
BbsI GAAGAC 2 cut(s) 368, 465
BbvI GCAGC 2 cut(s) 6, 166
BccI CCATC 1 cut(s) 217
BceAI ACGGC 2 cut(s) 337, 522
BciT130I CCWGG 3 cut(s) 200, 256, 464
BcnI CCSGG 3 cut(s) 264, 597, 598
BcoDI GTCTC 1 cut(s) 249
BfaI CTAG 1 cut(s) 640
BfoI RGCGCY 1 cut(s) 242
BglI GCCNNNNNGGC 1 cut(s) 236
BisI GCNGC 4 cut(s) 20, 155, 339, 437
BlsI GCNGC 4 cut(s) 21, 156, 340, 438
Bme1390I CCNGG 6 cut(s) 200, 256, 264, 464, 597, 598
Bme18I GGWCC 2 cut(s) 174, 635
BmeT110I CYCGRG 2 cut(s) 419, 596
BmgT120I GGNCC 9 cut(s) 174, 190, 202, 265, 266, 340, 405, 579, 635
BmiI GGNNCC 3 cut(s) 261, 267, 637
BmrFI CCNGG 6 cut(s) 200, 256, 264, 464, 597, 598
BmsI GCATC 2 cut(s) 379, 490
BpiI GAAGAC 2 cut(s) 368, 465
BplI GAGNNNNNCTC 2 cut(s) 105, 137
BpmI CTGGAG 1 cut(s) 61
BpuEI CTTGAG 1 cut(s) 604
BpuMI CCSGG 3 cut(s) 264, 597, 598
BsaHI GRCGYC 1 cut(s) 350
BsaJI CCNNGG 5 cut(s) 145, 198, 254, 255, 596
BsaWI WCCGGW 1 cut(s) 429
BsaXI ACNNNNNCTCC 4 cut(s) 59, 89, 299, 329
Bsc4I CCNNNNNNNGG 1 cut(s) 199
BseBI CCWGG 3 cut(s) 200, 256, 464
BseDI CCNNGG 5 cut(s) 145, 198, 254, 255, 596
BseGI GGATG 5 cut(s) 141, 273, 394, 505, 552
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMII CTCAG 1 cut(s) 363
BseSI GKGCMC 2 cut(s) 269, 309
BseXI GCAGC 2 cut(s) 6, 166
BseYI CCCAGC 1 cut(s) 481
Bsh1236I CGCG 3 cut(s) 320, 338, 384
BshFI GGCC 8 cut(s) 191, 203, 230, 267, 341, 407, 581, 611
BsiHKCI CYCGRG 2 cut(s) 419, 596
BsiSI CCGG 3 cut(s) 263, 430, 597
BslI CCNNNNNNNGG 1 cut(s) 199
BsmAI GTCTC 1 cut(s) 249
BsnI GGCC 8 cut(s) 191, 203, 230, 267, 341, 407, 581, 611
BsoBI CYCGRG 2 cut(s) 419, 596
Bsp120I GGGCCC 1 cut(s) 265
Bsp1286I GDGCHC 2 cut(s) 269, 309
Bsp143I GATC 6 cut(s) 24, 36, 259, 295, 592, 625
BspANI GGCC 8 cut(s) 191, 203, 230, 267, 341, 407, 581, 611
BspCNI CTCAG 1 cut(s) 364
BspFNI CGCG 3 cut(s) 320, 338, 384
BspLI GGNNCC 3 cut(s) 261, 267, 637
BspPI GGATC 6 cut(s) 31, 32, 254, 267, 587, 633
BsrBI CCGCTC 1 cut(s) 577
BssECI CCNNGG 5 cut(s) 145, 198, 254, 255, 596
BssMI GATC 6 cut(s) 24, 36, 259, 295, 592, 625
BssNI GRCGYC 1 cut(s) 350
Bst2UI CCWGG 3 cut(s) 200, 256, 464
Bst4CI ACNGT 1 cut(s) 174
Bst6I CTCTTC 2 cut(s) 395, 536
BstACI GRCGYC 1 cut(s) 350
BstC8I GCNNGC 2 cut(s) 471, 579
BstDEI CTNAG 1 cut(s) 372
BstDSI CCRYGG 1 cut(s) 145
BstF5I GGATG 5 cut(s) 141, 273, 394, 505, 552
BstFNI CGCG 3 cut(s) 320, 338, 384
BstH2I RGCGCY 1 cut(s) 242
BstHHI GCGC 3 cut(s) 241, 322, 384
BstKTI GATC 6 cut(s) 27, 39, 262, 298, 595, 628
BstMAI GTCTC 1 cut(s) 249
BstMBI GATC 6 cut(s) 24, 36, 259, 295, 592, 625
BstMWI GCNNNNNNNGC 3 cut(s) 215, 236, 328
BstNI CCWGG 3 cut(s) 200, 256, 464
BstNSI RCATGY 1 cut(s) 473
BstSCI CCNGG 6 cut(s) 198, 254, 262, 462, 595, 596
BstSLI GKGCMC 2 cut(s) 269, 309
BstUI CGCG 3 cut(s) 320, 338, 384
BstV1I GCAGC 2 cut(s) 6, 166
BstV2I GAAGAC 2 cut(s) 368, 465
BstX2I RGATCY 2 cut(s) 24, 259
BstYI RGATCY 2 cut(s) 24, 259
BsuRI GGCC 8 cut(s) 191, 203, 230, 267, 341, 407, 581, 611
BtgI CCRYGG 1 cut(s) 145
BtsCI GGATG 5 cut(s) 141, 273, 394, 505, 552
BtsIMutI CAGTG 1 cut(s) 533
Cac8I GCNNGC 2 cut(s) 471, 579
CaiI CAGNNNCTG 1 cut(s) 160
CfoI GCGC 3 cut(s) 241, 322, 384
Cfr13I GGNCC 9 cut(s) 174, 190, 202, 265, 266, 340, 405, 579, 635
Cfr9I CCCGGG 1 cut(s) 596
CseI GACGC 3 cut(s) 344, 358, 373
CsiI ACCWGGT 1 cut(s) 462
CviAII CATG 1 cut(s) 470
DdeI CTNAG 1 cut(s) 372
DpnI GATC 6 cut(s) 26, 38, 261, 297, 594, 627
DpnII GATC 6 cut(s) 24, 36, 259, 295, 592, 625
Eam1104I CTCTTC 2 cut(s) 395, 536
EarI CTCTTC 2 cut(s) 395, 536
EciI GGCGGA 1 cut(s) 506
Eco24I GRGCYC 1 cut(s) 269
Eco47I GGWCC 2 cut(s) 174, 635
Eco88I CYCGRG 2 cut(s) 419, 596
EcoO109I RGGNCCY 1 cut(s) 635
EcoRII CCWGG 3 cut(s) 198, 254, 462
EcoT38I GRGCYC 1 cut(s) 269
FaeI CATG 1 cut(s) 473
FaiI YATR 3 cut(s) 47, 65, 471
FatI CATG 1 cut(s) 469
FauI CCCGC 4 cut(s) 140, 377, 432, 570
FblI GTMKAC 1 cut(s) 347
Fnu4HI GCNGC 4 cut(s) 20, 155, 339, 437
FokI GGATG 5 cut(s) 128, 260, 401, 512, 559
FriOI GRGCYC 1 cut(s) 269
Fsp4HI GCNGC 4 cut(s) 20, 155, 339, 437
FspBI CTAG 1 cut(s) 640
GlaI GCGC 3 cut(s) 240, 321, 383
GluI GCNGC 4 cut(s) 20, 155, 339, 437
GsaI CCCAGC 1 cut(s) 485
GsuI CTGGAG 1 cut(s) 61
HaeII RGCGCY 1 cut(s) 242
HaeIII GGCC 8 cut(s) 191, 203, 230, 267, 341, 407, 581, 611
HapII CCGG 3 cut(s) 263, 430, 597
HgaI GACGC 3 cut(s) 344, 358, 373
HhaI GCGC 3 cut(s) 241, 322, 384
Hin1I GRCGYC 1 cut(s) 350
Hin1II CATG 1 cut(s) 473
Hin6I GCGC 3 cut(s) 239, 320, 382
HinP1I GCGC 3 cut(s) 239, 320, 382
HincII GTYRAC 1 cut(s) 348
HindII GTYRAC 1 cut(s) 348
HinfI GANTC 1 cut(s) 446
HpaII CCGG 3 cut(s) 263, 430, 597
HphI GGTGA 2 cut(s) 82, 409
Hpy166II GTNNAC 3 cut(s) 177, 348, 445
Hpy188I TCNGA 4 cut(s) 36, 101, 373, 604
Hpy188III TCNNGA 2 cut(s) 78, 160
Hpy8I GTNNAC 3 cut(s) 177, 348, 445
Hpy99I CGWCG 2 cut(s) 352, 508
HpyAV CCTTC 3 cut(s) 41, 229, 370
HpyCH4III ACNGT 1 cut(s) 174
HpyCH4V TGCA 1 cut(s) 469
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 236, 328
HpyF3I CTNAG 1 cut(s) 372
Hsp92I GRCGYC 1 cut(s) 350
Hsp92II CATG 1 cut(s) 473
HspAI GCGC 3 cut(s) 239, 320, 382
Kzo9I GATC 6 cut(s) 24, 36, 259, 295, 592, 625
LmnI GCTCC 3 cut(s) 102, 162, 379
Lsp1109I GCAGC 2 cut(s) 6, 166
LweI GCATC 2 cut(s) 379, 490
MabI ACCWGGT 1 cut(s) 462
MaeI CTAG 1 cut(s) 640
MaeIII GTNAC 1 cut(s) 530
MalI GATC 6 cut(s) 26, 38, 261, 297, 594, 627
MbiI CCGCTC 1 cut(s) 577
MboI GATC 6 cut(s) 24, 36, 259, 295, 592, 625
MboII GAAGA 5 cut(s) 49, 373, 412, 470, 553
MflI RGATCY 2 cut(s) 24, 259
MhlI GDGCHC 2 cut(s) 269, 309
MluCI AATT 1 cut(s) 569
MlyI GAGTC 1 cut(s) 440
MmeI TCCRAC 1 cut(s) 582
MseI TTAA 1 cut(s) 413
MslI CAYNNNNRTG 1 cut(s) 50
MspI CCGG 3 cut(s) 263, 430, 597
MspR9I CCNGG 6 cut(s) 200, 256, 264, 464, 597, 598
MvaI CCWGG 3 cut(s) 200, 256, 464
MvnI CGCG 3 cut(s) 320, 338, 384
MwoI GCNNNNNNNGC 3 cut(s) 215, 236, 328
NciI CCSGG 3 cut(s) 264, 597, 598
NdeII GATC 6 cut(s) 24, 36, 259, 295, 592, 625
NlaIII CATG 1 cut(s) 473
NlaIV GGNNCC 3 cut(s) 261, 267, 637
NmeAIII GCCGAG 3 cut(s) 256, 428, 433
NspI RCATGY 1 cut(s) 473
PaeI GCATGC 1 cut(s) 473
PasI CCCWGGG 1 cut(s) 255
PkrI GCNGC 4 cut(s) 21, 156, 340, 438
PleI GAGTC 1 cut(s) 440
PpsI GAGTC 1 cut(s) 440
PpuMI RGGWCCY 1 cut(s) 635
Psp5II RGGWCCY 1 cut(s) 635
Psp6I CCWGG 3 cut(s) 198, 254, 462
PspFI CCCAGC 1 cut(s) 481
PspGI CCWGG 3 cut(s) 198, 254, 462
PspN4I GGNNCC 3 cut(s) 261, 267, 637
PspOMI GGGCCC 1 cut(s) 265
PspPI GGNCC 9 cut(s) 174, 190, 202, 265, 266, 340, 405, 579, 635
PspPPI RGGWCCY 1 cut(s) 635
PstNI CAGNNNCTG 1 cut(s) 160
PsuI RGATCY 2 cut(s) 24, 259
RseI CAYNNNNRTG 1 cut(s) 50
SalI GTCGAC 1 cut(s) 346
SaqAI TTAA 1 cut(s) 413
SatI GCNGC 4 cut(s) 20, 155, 339, 437
Sau3AI GATC 6 cut(s) 24, 36, 259, 295, 592, 625
Sau96I GGNCC 9 cut(s) 174, 190, 202, 265, 266, 340, 405, 579, 635
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 6 cut(s) 200, 256, 264, 464, 597, 598
SduI GDGCHC 2 cut(s) 269, 309
SetI ASST 7 cut(s) 15, 99, 123, 159, 317, 420, 465
SexAI ACCWGGT 1 cut(s) 462
SfaNI GCATC 2 cut(s) 379, 490
SinI GGWCC 2 cut(s) 174, 635
SmaI CCCGGG 1 cut(s) 598
SmiMI CAYNNNNRTG 1 cut(s) 50
SmlI CTYRAG 1 cut(s) 583
SmoI CTYRAG 1 cut(s) 583
SphI GCATGC 1 cut(s) 473
Sse9I AATT 1 cut(s) 569
SspMI CTAG 1 cut(s) 640
StyD4I CCNGG 6 cut(s) 198, 254, 262, 462, 595, 596
TaaI ACNGT 1 cut(s) 174
TaqI TCGA 3 cut(s) 128, 294, 347
TasI AATT 1 cut(s) 569
TauI GCSGC 2 cut(s) 341, 439
Tru1I TTAA 1 cut(s) 413
Tru9I TTAA 1 cut(s) 413
TscAI CASTG 1 cut(s) 533
TseI GCWGC 2 cut(s) 19, 154
TspDTI ATGAA 1 cut(s) 130
TspMI CCCGGG 1 cut(s) 596
TspRI CASTG 1 cut(s) 533
VpaK11BI GGWCC 2 cut(s) 174, 635
XapI RAATTY 1 cut(s) 569
XceI RCATGY 1 cut(s) 473
XmaI CCCGGG 1 cut(s) 596
XmiI GTMKAC 1 cut(s) 347
XspI CTAG 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.