Rorug02G0170600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004173
Physical Location & Seq
Reverse (-)
15355634 .. 15356356
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0170600.1

Sequence Viewer

Length: 723 bp
ATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTATGTCAAGGGATTTAAGTGCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGGTATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGAGAACTAGTTCTCTTGGTACTGGTAGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTGATCTCAACTTTGGTTCCACCTATTCTACTGGTAATGAAGGATTTATTTACTTAAATTTTGTTTCGTATTCTTCCTCACACTTCAACACTAATACCAGTACAACTCTTTTGGCACAACAGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

240

Amino Acids

26.51

Weight (kDa)

5.66

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 5.4e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 710
AccB7I CCANNNNNTGG 2 cut(s) 413, 446
AclWI GGATC 9 cut(s) 141, 330, 378, 391, 411, 424, 444, 457, 492
AcsI RAATTY 1 cut(s) 559
AcyI GRCGYC 1 cut(s) 707
AfaI GTAC 3 cut(s) 91, 328, 604
AfiI CCNNNNNNNGG 3 cut(s) 413, 446, 697
AgsI TTSAA 2 cut(s) 589, 673
AhlI ACTAGT 2 cut(s) 314, 476
AjnI CCWGG 2 cut(s) 92, 662
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 4 cut(s) 53, 199, 410, 443
AluI AGCT 4 cut(s) 53, 199, 410, 443
Alw21I GWGCWC 1 cut(s) 698
Alw26I GTCTC 1 cut(s) 197
Alw44I GTGCAC 1 cut(s) 694
AlwI GGATC 9 cut(s) 141, 330, 378, 391, 411, 424, 444, 457, 492
Ama87I CYCGRG 1 cut(s) 261
AoxI GGCC 2 cut(s) 404, 437
ApaLI GTGCAC 1 cut(s) 694
ApeKI GCWGC 2 cut(s) 50, 293
ApoI RAATTY 1 cut(s) 559
ArsI GACNNNNNNTTYG 6 cut(s) 383, 415, 416, 448, 449, 481
Asp700I GAANNNNTTC 1 cut(s) 316
AspS9I GGNCC 4 cut(s) 357, 404, 437, 471
AsuHPI GGTGA 1 cut(s) 652
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 2 cut(s) 357, 471
BaeGI GKGCMC 3 cut(s) 164, 306, 698
BamHI GGATCC 3 cut(s) 383, 416, 449
BanII GRGCYC 1 cut(s) 262
BauI CACGAG 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 698
BbvI GCAGC 2 cut(s) 62, 280
BccI CCATC 2 cut(s) 395, 485
BceAI ACGGC 2 cut(s) 72, 714
BciT130I CCWGG 2 cut(s) 94, 664
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 2 cut(s) 314, 476
BfaI CTAG 2 cut(s) 315, 477
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 186
BisI GCNGC 2 cut(s) 51, 294
BlsI GCNGC 2 cut(s) 52, 295
Bme1390I CCNGG 2 cut(s) 94, 664
Bme18I GGWCC 2 cut(s) 357, 471
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 4 cut(s) 357, 404, 437, 471
BmiI GGNNCC 8 cut(s) 6, 245, 358, 385, 418, 451, 472, 520
BmrFI CCNGG 2 cut(s) 94, 664
BpmI CTGGAG 3 cut(s) 93, 179, 282
BpuEI CTTGAG 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 707
Bsc4I CCNNNNNNNGG 3 cut(s) 413, 446, 697
Bse1I ACTGG 7 cut(s) 205, 299, 334, 367, 376, 538, 600
BseBI CCWGG 2 cut(s) 94, 664
BseGI GGATG 1 cut(s) 634
BseLI CCNNNNNNNGG 3 cut(s) 413, 446, 697
BseNI ACTGG 7 cut(s) 205, 299, 334, 367, 376, 538, 600
BseRI GAGGAG 3 cut(s) 44, 665, 668
BseSI GKGCMC 3 cut(s) 164, 306, 698
BseXI GCAGC 2 cut(s) 62, 280
BshFI GGCC 2 cut(s) 406, 439
BsiHKAI GWGCWC 1 cut(s) 698
BsiHKCI CYCGRG 1 cut(s) 261
BslI CCNNNNNNNGG 3 cut(s) 413, 446, 697
BsmAI GTCTC 1 cut(s) 197
BsnI GGCC 2 cut(s) 406, 439
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 4 cut(s) 164, 262, 306, 698
BspANI GGCC 2 cut(s) 406, 439
BspLI GGNNCC 8 cut(s) 6, 245, 358, 385, 418, 451, 472, 520
BspPI GGATC 9 cut(s) 141, 330, 378, 391, 411, 424, 444, 457, 492
BsrI ACTGG 7 cut(s) 205, 299, 334, 367, 376, 538, 600
BssNI GRCGYC 1 cut(s) 707
BssSI CACGAG 1 cut(s) 182
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 2 cut(s) 94, 664
Bst6I CTCTTC 1 cut(s) 683
BstACI GRCGYC 1 cut(s) 707
BstC8I GCNNGC 2 cut(s) 408, 441
BstEII GGTNACC 1 cut(s) 715
BstF5I GGATG 1 cut(s) 634
BstMAI GTCTC 1 cut(s) 197
BstNI CCWGG 2 cut(s) 94, 664
BstPI GGTNACC 1 cut(s) 715
BstSCI CCNGG 2 cut(s) 92, 662
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 3 cut(s) 164, 306, 698
BstV1I GCAGC 2 cut(s) 62, 280
BstX2I RGATCY 7 cut(s) 133, 186, 335, 383, 416, 449, 497
BstXI CCANNNNNNTGG 1 cut(s) 53
BstYI RGATCY 7 cut(s) 133, 186, 335, 383, 416, 449, 497
BsuRI GGCC 2 cut(s) 406, 439
BtsCI GGATG 1 cut(s) 634
BtsIMutI CAGTG 2 cut(s) 306, 360
Cac8I GCNNGC 2 cut(s) 408, 441
Cfr13I GGNCC 4 cut(s) 357, 404, 437, 471
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 3 cut(s) 90, 327, 603
CviAII CATG 2 cut(s) 70, 307
CviJI RGCY 9 cut(s) 53, 87, 199, 260, 293, 406, 410, 439, 443
CviKI_1 RGCY 9 cut(s) 53, 87, 199, 260, 293, 406, 410, 439, 443
CviQI GTAC 3 cut(s) 90, 327, 603
Eam1104I CTCTTC 1 cut(s) 683
EarI CTCTTC 1 cut(s) 683
Eco24I GRGCYC 1 cut(s) 262
Eco47I GGWCC 2 cut(s) 357, 471
Eco88I CYCGRG 1 cut(s) 261
Eco91I GGTNACC 1 cut(s) 715
EcoO65I GGTNACC 1 cut(s) 715
EcoRII CCWGG 2 cut(s) 92, 662
EcoT38I GRGCYC 1 cut(s) 262
FaeI CATG 2 cut(s) 73, 310
FaiI YATR 5 cut(s) 71, 144, 210, 216, 308
FatI CATG 2 cut(s) 69, 306
Fnu4HI GCNGC 2 cut(s) 51, 294
FokI GGATG 1 cut(s) 621
FriOI GRGCYC 1 cut(s) 262
Fsp4HI GCNGC 2 cut(s) 51, 294
FspBI CTAG 2 cut(s) 315, 477
GluI GCNGC 2 cut(s) 51, 294
GsuI CTGGAG 3 cut(s) 93, 179, 282
HaeIII GGCC 2 cut(s) 406, 439
Hin1I GRCGYC 1 cut(s) 707
Hin1II CATG 2 cut(s) 73, 310
HinfI GANTC 3 cut(s) 100, 123, 178
HphI GGTGA 1 cut(s) 652
Hpy166II GTNNAC 3 cut(s) 360, 474, 696
Hpy188III TCNNGA 4 cut(s) 110, 182, 247, 263
Hpy8I GTNNAC 3 cut(s) 360, 474, 696
HpyAV CCTTC 1 cut(s) 536
HpyCH4IV ACGT 2 cut(s) 252, 707
HpyCH4V TGCA 2 cut(s) 642, 696
HpySE526I ACGT 2 cut(s) 252, 707
Hsp92I GRCGYC 1 cut(s) 707
Hsp92II CATG 2 cut(s) 73, 310
LmnI GCTCC 1 cut(s) 301
Lsp1109I GCAGC 2 cut(s) 62, 280
MabI ACCWGGT 1 cut(s) 92
MaeI CTAG 2 cut(s) 315, 477
MaeII ACGT 2 cut(s) 252, 707
MaeIII GTNAC 1 cut(s) 715
MboII GAAGA 2 cut(s) 567, 670
MflI RGATCY 7 cut(s) 133, 186, 335, 383, 416, 449, 497
MhlI GDGCHC 4 cut(s) 164, 262, 306, 698
MluCI AATT 5 cut(s) 349, 397, 430, 463, 559
MroXI GAANNNNTTC 1 cut(s) 316
MseI TTAA 2 cut(s) 156, 557
MspA1I CMGCKG 4 cut(s) 53, 199, 410, 443
MspR9I CCNGG 2 cut(s) 94, 664
MvaI CCWGG 2 cut(s) 94, 664
NlaIII CATG 2 cut(s) 73, 310
NlaIV GGNNCC 8 cut(s) 6, 245, 358, 385, 418, 451, 472, 520
PaeR7I CTCGAG 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 704
PdmI GAANNNNTTC 1 cut(s) 316
PfeI GAWTC 3 cut(s) 100, 123, 178
PflMI CCANNNNNTGG 2 cut(s) 413, 446
PkrI GCNGC 2 cut(s) 52, 295
Psp6I CCWGG 2 cut(s) 92, 662
PspEI GGTNACC 1 cut(s) 715
PspGI CCWGG 2 cut(s) 92, 662
PspN4I GGNNCC 8 cut(s) 6, 245, 358, 385, 418, 451, 472, 520
PspPI GGNCC 4 cut(s) 357, 404, 437, 471
PsuI RGATCY 7 cut(s) 133, 186, 335, 383, 416, 449, 497
PvuII CAGCTG 4 cut(s) 53, 199, 410, 443
RsaI GTAC 3 cut(s) 91, 328, 604
RsaNI GTAC 3 cut(s) 90, 327, 603
SaqAI TTAA 2 cut(s) 156, 557
SatI GCNGC 2 cut(s) 51, 294
Sau96I GGNCC 4 cut(s) 357, 404, 437, 471
ScrFI CCNGG 2 cut(s) 94, 664
SduI GDGCHC 4 cut(s) 164, 262, 306, 698
SexAI ACCWGGT 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 2 cut(s) 357, 471
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 2 cut(s) 128, 261
SmoI CTYRAG 2 cut(s) 128, 261
SpeI ACTAGT 2 cut(s) 314, 476
Sse9I AATT 5 cut(s) 349, 397, 430, 463, 559
SspMI CTAG 2 cut(s) 315, 477
StyD4I CCNGG 2 cut(s) 92, 662
TaiI ACGT 2 cut(s) 255, 710
TaqI TCGA 2 cut(s) 262, 390
TasI AATT 5 cut(s) 349, 397, 430, 463, 559
TatI WGTACW 1 cut(s) 602
TfiI GAWTC 3 cut(s) 100, 123, 178
Tru1I TTAA 2 cut(s) 156, 557
Tru9I TTAA 2 cut(s) 156, 557
TscAI CASTG 2 cut(s) 306, 367
TseI GCWGC 2 cut(s) 50, 293
TspDTI ATGAA 2 cut(s) 290, 555
TspRI CASTG 2 cut(s) 306, 367
Van91I CCANNNNNTGG 2 cut(s) 413, 446
VneI GTGCAC 1 cut(s) 694
VpaK11BI GGWCC 2 cut(s) 357, 471
XapI RAATTY 1 cut(s) 559
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 316
XspI CTAG 2 cut(s) 315, 477
ZraI GACGTC 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.