Rroxscaffold_3G00226160

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004173
Physical Location & Seq
Reverse (-)
9579665 .. 9580604
940 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00226160.1

Sequence Viewer

Length: 657 bp
ATGTTTTCCCAGATGGTAGATGACATTCTTATCCAAATCAGCCTAGTCCTCCTCGTCGTCGTCACCTTCCTCTTCATCCACAGCGTTCCCCAGAGAGTCCTCGCCAACCTCCGCCTCCGCCTGAAAAGCAAATCTGGCATCCAATCCAAGCGCCACTTCGTCCTCGGCGCCCAGCTCCTCGCCCAAGCCAGATCCGCCTCCTCCAAGTCCTCCGCCGCCTCCCTCTCCAAGCAAGCCCTTGACGAAGCCGACAAGGCCATCGCCCTCGATCCCAAAGACGCCGCCGCTCACATCCTCAAAGCCCTCGCTCTCGACGTCCAGGGCTTCAAGACCTCCGCCCTCGACGCCATCGACGTCGCCCTCTCCCCACTCTGCCGCAAGAGCCTCGACGACGCCGAGCGCGGCGACGCGCTCCTCAAGCGGGCCGAGATTAAGATGTCCATGAACCGACCCGCCCGGCTTGACTCGGTCATCGAGGATTTGACTCTCGCCGTGAAGCTGAGCCCTGAAAACGCCAAGGCGTTTTGCTCGTTGGGAGAGTGCTATGAGGAGAAGAAGATGGAGGAGGAGGCCAAGAAGGCCTACGAGGAGGCTCTGAAGCTTCATCCACGTTTTGCCGCCGCGAAGGAGGCACTGGACCGCCTTGGTTCGTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_2 TPR_8

Protein Analysis

218

Amino Acids

23.77

Weight (kDa)

8.69

Isoelectric Point (pI)

45.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_1 PF00515 172 - 205 2.5e-07 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 318, 357
AccB1I GGYRCC 1 cut(s) 167
AccBSI CCGCTC 1 cut(s) 287
AccII CGCG 3 cut(s) 402, 410, 623
AclWI GGATC 2 cut(s) 186, 263
AcuI CTGAAG 1 cut(s) 617
AcyI GRCGYC 6 cut(s) 168, 279, 315, 345, 354, 393
AfiI CCNNNNNNNGG 1 cut(s) 421
AgsI TTSAA 1 cut(s) 328
AjnI CCWGG 1 cut(s) 318
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AluBI AGCT 3 cut(s) 175, 499, 601
AluI AGCT 3 cut(s) 175, 499, 601
AlwI GGATC 2 cut(s) 186, 263
AoxI GGCC 4 cut(s) 255, 423, 570, 579
AspLEI GCGC 4 cut(s) 153, 170, 402, 412
AspS9I GGNCC 2 cut(s) 423, 637
AsuC2I CCSGG 1 cut(s) 457
AsuHPI GGTGA 1 cut(s) 55
AvaII GGWCC 1 cut(s) 637
BanI GGYRCC 1 cut(s) 167
BanII GRGCYC 1 cut(s) 506
BccI CCATC 4 cut(s) 7, 266, 356, 553
BceAI ACGGC 1 cut(s) 476
BcgI CGANNNNNNTGC 2 cut(s) 367, 401
BciT130I CCWGG 1 cut(s) 320
BcnI CCSGG 1 cut(s) 457
BfaI CTAG 1 cut(s) 44
BfoI RGCGCY 2 cut(s) 154, 171
BglI GCCNNNNNGGC 2 cut(s) 254, 578
BisI GCNGC 7 cut(s) 216, 282, 285, 376, 403, 618, 621
BlpI GCTNAGC 1 cut(s) 500
BlsI GCNGC 7 cut(s) 217, 283, 286, 377, 404, 619, 622
Bme1390I CCNGG 2 cut(s) 320, 457
Bme18I GGWCC 1 cut(s) 637
BmgT120I GGNCC 2 cut(s) 423, 637
BmiI GGNNCC 1 cut(s) 169
BmrFI CCNGG 2 cut(s) 320, 457
BmsI GCATC 1 cut(s) 147
Bpu1102I GCTNAGC 1 cut(s) 500
BpuEI CTTGAG 1 cut(s) 401
BpuMI CCSGG 1 cut(s) 457
BsaHI GRCGYC 6 cut(s) 168, 279, 315, 345, 354, 393
BsaJI CCNNGG 4 cut(s) 163, 319, 516, 643
Bsc4I CCNNNNNNNGG 1 cut(s) 421
Bse1I ACTGG 1 cut(s) 639
BseBI CCWGG 1 cut(s) 320
BseDI CCNNGG 4 cut(s) 163, 319, 516, 643
BseGI GGATG 4 cut(s) 75, 138, 291, 604
BseLI CCNNNNNNNGG 1 cut(s) 421
BseMII CTCAG 1 cut(s) 491
BseNI ACTGG 1 cut(s) 639
BseRI GAGGAG 8 cut(s) 41, 167, 190, 404, 563, 578, 581, 602
BseYI CCCAGC 1 cut(s) 171
Bsh1236I CGCG 3 cut(s) 402, 410, 623
BshFI GGCC 4 cut(s) 257, 425, 572, 581
BshNI GGYRCC 1 cut(s) 167
BsiSI CCGG 1 cut(s) 457
BslI CCNNNNNNNGG 1 cut(s) 421
BsnI GGCC 4 cut(s) 257, 425, 572, 581
Bsp1286I GDGCHC 1 cut(s) 506
Bsp143I GATC 2 cut(s) 191, 268
Bsp1720I GCTNAGC 1 cut(s) 500
BspANI GGCC 4 cut(s) 257, 425, 572, 581
BspCNI CTCAG 1 cut(s) 492
BspFNI CGCG 3 cut(s) 402, 410, 623
BspLI GGNNCC 1 cut(s) 169
BspPI GGATC 2 cut(s) 186, 263
BspT107I GGYRCC 1 cut(s) 167
BsrBI CCGCTC 1 cut(s) 287
BsrI ACTGG 1 cut(s) 639
BssECI CCNNGG 4 cut(s) 163, 319, 516, 643
BssMI GATC 2 cut(s) 191, 268
BssNI GRCGYC 6 cut(s) 168, 279, 315, 345, 354, 393
BssT1I CCWWGG 2 cut(s) 516, 643
Bst2UI CCWGG 1 cut(s) 320
Bst6I CTCTTC 1 cut(s) 77
BstACI GRCGYC 6 cut(s) 168, 279, 315, 345, 354, 393
BstC8I GCNNGC 2 cut(s) 234, 423
BstDEI CTNAG 1 cut(s) 500
BstF5I GGATG 4 cut(s) 75, 138, 291, 604
BstFNI CGCG 3 cut(s) 402, 410, 623
BstH2I RGCGCY 2 cut(s) 154, 171
BstHHI GCGC 4 cut(s) 153, 170, 402, 412
BstKTI GATC 2 cut(s) 194, 271
BstMBI GATC 2 cut(s) 191, 268
BstMWI GCNNNNNNNGC 9 cut(s) 126, 135, 194, 254, 344, 381, 418, 578, 629
BstNI CCWGG 1 cut(s) 320
BstSCI CCNGG 2 cut(s) 318, 455
BstUI CGCG 3 cut(s) 402, 410, 623
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
BsuRI GGCC 4 cut(s) 257, 425, 572, 581
BtgZI GCGATG 1 cut(s) 244
BtsCI GGATG 4 cut(s) 75, 138, 291, 604
BtsIMutI CAGTG 1 cut(s) 632
Cac8I GCNNGC 2 cut(s) 234, 423
CfoI GCGC 4 cut(s) 153, 170, 402, 412
Cfr13I GGNCC 2 cut(s) 423, 637
CseI GACGC 4 cut(s) 287, 353, 401, 416
CviAII CATG 1 cut(s) 442
DdeI CTNAG 1 cut(s) 500
DinI GGCGCC 1 cut(s) 169
DpnI GATC 2 cut(s) 193, 270
DpnII GATC 2 cut(s) 191, 268
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
EciI GGCGGA 5 cut(s) 101, 107, 184, 202, 325
Eco130I CCWWGG 2 cut(s) 516, 643
Eco147I AGGCCT 1 cut(s) 581
Eco24I GRGCYC 1 cut(s) 506
Eco47I GGWCC 1 cut(s) 637
Eco57I CTGAAG 1 cut(s) 617
EcoRII CCWGG 1 cut(s) 318
EcoT14I CCWWGG 2 cut(s) 516, 643
EcoT38I GRGCYC 1 cut(s) 506
EgeI GGCGCC 1 cut(s) 169
EheI GGCGCC 1 cut(s) 169
ErhI CCWWGG 2 cut(s) 516, 643
FaeI CATG 1 cut(s) 445
FaiI YATR 2 cut(s) 443, 546
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FatI CATG 1 cut(s) 441
FauI CCCGC 2 cut(s) 414, 460
Fnu4HI GCNGC 7 cut(s) 216, 282, 285, 376, 403, 618, 621
FokI GGATG 4 cut(s) 62, 125, 278, 591
FriOI GRGCYC 1 cut(s) 506
Fsp4HI GCNGC 7 cut(s) 216, 282, 285, 376, 403, 618, 621
FspBI CTAG 1 cut(s) 44
GlaI GCGC 4 cut(s) 152, 169, 401, 411
GluI GCNGC 7 cut(s) 216, 282, 285, 376, 403, 618, 621
GsaI CCCAGC 1 cut(s) 175
HaeII RGCGCY 2 cut(s) 154, 171
HaeIII GGCC 4 cut(s) 257, 425, 572, 581
HapII CCGG 1 cut(s) 457
HgaI GACGC 4 cut(s) 287, 353, 401, 416
HhaI GCGC 4 cut(s) 153, 170, 402, 412
Hin1I GRCGYC 6 cut(s) 168, 279, 315, 345, 354, 393
Hin1II CATG 1 cut(s) 445
Hin6I GCGC 4 cut(s) 151, 168, 400, 410
HinP1I GCGC 4 cut(s) 151, 168, 400, 410
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 3 cut(s) 96, 464, 484
HpaII CCGG 1 cut(s) 457
HphI GGTGA 1 cut(s) 55
Hpy188I TCNGA 1 cut(s) 597
Hpy188III TCNNGA 2 cut(s) 311, 328
HpyAV CCTTC 3 cut(s) 76, 571, 619
HpyCH4IV ACGT 3 cut(s) 315, 354, 610
HpyF10VI GCNNNNNNNGC 9 cut(s) 126, 135, 194, 254, 344, 381, 418, 578, 629
HpyF3I CTNAG 1 cut(s) 500
HpySE526I ACGT 3 cut(s) 315, 354, 610
Hsp92I GRCGYC 6 cut(s) 168, 279, 315, 345, 354, 393
Hsp92II CATG 1 cut(s) 445
HspAI GCGC 4 cut(s) 151, 168, 400, 410
KasI GGCGCC 1 cut(s) 167
Kzo9I GATC 2 cut(s) 191, 268
LmnI GCTCC 2 cut(s) 180, 417
LweI GCATC 1 cut(s) 147
MaeI CTAG 1 cut(s) 44
MaeII ACGT 3 cut(s) 315, 354, 610
MaeIII GTNAC 1 cut(s) 61
MalI GATC 2 cut(s) 193, 270
MbiI CCGCTC 1 cut(s) 287
MboI GATC 2 cut(s) 191, 268
MboII GAAGA 3 cut(s) 64, 565, 568
MflI RGATCY 1 cut(s) 191
MhlI GDGCHC 1 cut(s) 506
Mly113I GGCGCC 1 cut(s) 168
MlyI GAGTC 3 cut(s) 105, 458, 478
MseI TTAA 1 cut(s) 432
MspI CCGG 1 cut(s) 457
MspR9I CCNGG 2 cut(s) 320, 457
MvaI CCWGG 1 cut(s) 320
MvnI CGCG 3 cut(s) 402, 410, 623
MwoI GCNNNNNNNGC 9 cut(s) 126, 135, 194, 254, 344, 381, 418, 578, 629
NarI GGCGCC 1 cut(s) 168
NciI CCSGG 1 cut(s) 457
NdeII GATC 2 cut(s) 191, 268
NlaIII CATG 1 cut(s) 445
NlaIV GGNNCC 1 cut(s) 169
NmeAIII GCCGAG 3 cut(s) 144, 421, 451
NmuCI GTSAC 1 cut(s) 61
PceI AGGCCT 1 cut(s) 581
PcsI WCGNNNNNNNCGW 4 cut(s) 312, 348, 351, 393
PflFI GACNNNGTC 1 cut(s) 467
PkrI GCNGC 7 cut(s) 217, 283, 286, 377, 404, 619, 622
PleI GAGTC 3 cut(s) 104, 458, 478
PluTI GGCGCC 1 cut(s) 171
PpsI GAGTC 3 cut(s) 104, 458, 478
Psp6I CCWGG 1 cut(s) 318
PspFI CCCAGC 1 cut(s) 171
PspGI CCWGG 1 cut(s) 318
PspN4I GGNNCC 1 cut(s) 169
PspPI GGNCC 2 cut(s) 423, 637
PsuI RGATCY 1 cut(s) 191
PsyI GACNNNGTC 1 cut(s) 467
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 7 cut(s) 216, 282, 285, 376, 403, 618, 621
Sau3AI GATC 2 cut(s) 191, 268
Sau96I GGNCC 2 cut(s) 423, 637
SchI GAGTC 3 cut(s) 105, 458, 478
ScrFI CCNGG 2 cut(s) 320, 457
SduI GDGCHC 1 cut(s) 506
SetI ASST 9 cut(s) 68, 111, 177, 318, 335, 357, 501, 603, 613
SfaNI GCATC 1 cut(s) 147
SfiI GGCCNNNNNGGCC 1 cut(s) 578
SfoI GGCGCC 1 cut(s) 169
SinI GGWCC 1 cut(s) 637
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
SseBI AGGCCT 1 cut(s) 581
SspDI GGCGCC 1 cut(s) 167
SspMI CTAG 1 cut(s) 44
StuI AGGCCT 1 cut(s) 581
StyD4I CCNGG 2 cut(s) 318, 455
StyI CCWWGG 2 cut(s) 516, 643
TaiI ACGT 3 cut(s) 318, 357, 613
TaqI TCGA 6 cut(s) 267, 312, 342, 351, 387, 474
TaqII GACCGA 1 cut(s) 457
TauI GCSGC 7 cut(s) 218, 284, 287, 378, 405, 620, 623
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 1 cut(s) 639
TseFI GTSAC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 3 cut(s) 64, 458, 593
TspRI CASTG 1 cut(s) 639
Tth111I GACNNNGTC 1 cut(s) 467
VpaK11BI GGWCC 1 cut(s) 637
XspI CTAG 1 cut(s) 44
ZraI GACGTC 2 cut(s) 316, 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.