RLG00000017858

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0004173
Physical Location & Seq
Forward (+)
22381428 .. 22382087
660 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017858

Sequence Viewer

Length: 360 bp
ATGGCAGCAGAGGTGGTGCTGCAGGTGGCCCTTCTGATCCTAACCCTTGCCATATTCTTCGCCTCACTCGCGGATAGGGAGCGTGGGGAGGCGTTGGTGAAGAGGGCGGAGCTGAAGCTCGCGCTGAACAGGCGGCGCCGGGTCGACTCGGCGGTCGAGGACCTGGTTGAAGCGGTTGGGCTGAGTTCGGGTGAGGATGATACGACGGCGTTTTGTTTGTTGGGTCAGTGTTACGAGCGAAAGGGGATGAGGGACGGAGCTAGGGAGGCCTTTGAGCGGGCCTTGACGATGGATTCTGGGTCGCTATTGGCCCGTCAAGGCTTGGACCGGTTGCGCCTTAATCAAAGTCCAAGCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

120

Amino Acids

13.06

Weight (kDa)

5.53

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 13
AasI GACNNNNNNGTC 1 cut(s) 152
Acc36I ACCTGC 1 cut(s) 13
AccB1I GGYRCC 1 cut(s) 135
AccBSI CCGCTC 1 cut(s) 277
AccI GTMKAC 1 cut(s) 144
AccII CGCG 2 cut(s) 71, 122
AciI CCGC 6 cut(s) 71, 107, 133, 152, 173, 277
AclWI GGATC 1 cut(s) 31
AcuI CTGAAG 1 cut(s) 134
AcyI GRCGYC 1 cut(s) 136
AfiI CCNNNNNNNGG 1 cut(s) 276
AgeI ACCGGT 1 cut(s) 327
AgsI TTSAA 1 cut(s) 170
AjnI CCWGG 1 cut(s) 162
AluBI AGCT 3 cut(s) 112, 118, 260
AluI AGCT 3 cut(s) 112, 118, 260
AlwI GGATC 1 cut(s) 31
AoxI GGCC 4 cut(s) 27, 267, 279, 309
ApeKI GCWGC 2 cut(s) 5, 19
AsiGI ACCGGT 1 cut(s) 327
AspLEI GCGC 3 cut(s) 124, 138, 336
AspS9I GGNCC 5 cut(s) 28, 160, 279, 310, 325
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 2 cut(s) 109, 203
AvaII GGWCC 2 cut(s) 160, 325
BanI GGYRCC 1 cut(s) 135
BbvI GCAGC 2 cut(s) 6, 17
BccI CCATC 1 cut(s) 283
BceAI ACGGC 1 cut(s) 222
BciT130I CCWGG 1 cut(s) 164
BcnI CCSGG 1 cut(s) 140
BfaI CTAG 1 cut(s) 261
BfmI CTRYAG 1 cut(s) 20
BfoI RGCGCY 1 cut(s) 139
BfuAI ACCTGC 1 cut(s) 13
BisI GCNGC 3 cut(s) 6, 20, 134
BlsI GCNGC 3 cut(s) 7, 21, 135
Bme1390I CCNGG 2 cut(s) 140, 164
Bme18I GGWCC 2 cut(s) 160, 325
BmgT120I GGNCC 5 cut(s) 28, 160, 279, 310, 325
BmiI GGNNCC 1 cut(s) 137
BmrFI CCNGG 2 cut(s) 140, 164
BpuMI CCSGG 1 cut(s) 140
BsaHI GRCGYC 1 cut(s) 136
BsaWI WCCGGW 1 cut(s) 327
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse118I RCCGGY 1 cut(s) 327
BseBI CCWGG 1 cut(s) 164
BseGI GGATG 2 cut(s) 202, 252
BseLI CCNNNNNNNGG 1 cut(s) 276
BseMII CTCAG 1 cut(s) 173
BseXI GCAGC 2 cut(s) 6, 17
Bsh1236I CGCG 2 cut(s) 71, 122
Bsh1285I CGRYCG 1 cut(s) 156
BshFI GGCC 4 cut(s) 29, 269, 281, 311
BshNI GGYRCC 1 cut(s) 135
BshTI ACCGGT 1 cut(s) 327
BsiEI CGRYCG 1 cut(s) 156
BsiSI CCGG 2 cut(s) 139, 328
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 1 cut(s) 276
BsmFI GGGAC 1 cut(s) 266
BsnI GGCC 4 cut(s) 29, 269, 281, 311
Bsp143I GATC 1 cut(s) 36
BspACI CCGC 6 cut(s) 71, 107, 133, 152, 173, 277
BspANI GGCC 4 cut(s) 29, 269, 281, 311
BspCNI CTCAG 1 cut(s) 174
BspFNI CGCG 2 cut(s) 71, 122
BspLI GGNNCC 1 cut(s) 137
BspMAI CTGCAG 1 cut(s) 24
BspMI ACCTGC 1 cut(s) 13
BspPI GGATC 1 cut(s) 31
BspT107I GGYRCC 1 cut(s) 135
BsrBI CCGCTC 1 cut(s) 277
BsrFI RCCGGY 1 cut(s) 327
BssAI RCCGGY 1 cut(s) 327
BssMI GATC 1 cut(s) 36
BssNI GRCGYC 1 cut(s) 136
Bst2UI CCWGG 1 cut(s) 164
Bst6I CTCTTC 1 cut(s) 95
BstACI GRCGYC 1 cut(s) 136
BstC8I GCNNGC 2 cut(s) 120, 279
BstDEI CTNAG 1 cut(s) 182
BstF5I GGATG 2 cut(s) 202, 252
BstFNI CGCG 2 cut(s) 71, 122
BstH2I RGCGCY 1 cut(s) 139
BstHHI GCGC 3 cut(s) 124, 138, 336
BstKTI GATC 1 cut(s) 39
BstMBI GATC 1 cut(s) 36
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 3 cut(s) 68, 130, 266
BstNI CCWGG 1 cut(s) 164
BstSCI CCNGG 2 cut(s) 138, 162
BstSFI CTRYAG 1 cut(s) 20
BstUI CGCG 2 cut(s) 71, 122
BstV1I GCAGC 2 cut(s) 6, 17
BsuRI GGCC 4 cut(s) 29, 269, 281, 311
BtsCI GGATG 2 cut(s) 202, 252
BtsIMutI CAGTG 1 cut(s) 233
BveI ACCTGC 1 cut(s) 13
Cac8I GCNNGC 2 cut(s) 120, 279
CfoI GCGC 3 cut(s) 124, 138, 336
Cfr10I RCCGGY 1 cut(s) 327
Cfr13I GGNCC 5 cut(s) 28, 160, 279, 310, 325
CsiI ACCWGGT 1 cut(s) 162
CspAI ACCGGT 1 cut(s) 327
CviAII CATG 1 cut(s) 357
DdeI CTNAG 1 cut(s) 182
DinI GGCGCC 1 cut(s) 137
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
EciI GGCGGA 1 cut(s) 122
Eco147I AGGCCT 1 cut(s) 269
Eco47I GGWCC 2 cut(s) 160, 325
Eco57I CTGAAG 1 cut(s) 134
EcoO109I RGGNCCY 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 162
EgeI GGCGCC 1 cut(s) 137
EheI GGCGCC 1 cut(s) 137
FaeI CATG 1 cut(s) 360
FaiI YATR 2 cut(s) 53, 358
FaqI GGGAC 1 cut(s) 266
FatI CATG 1 cut(s) 356
FauI CCCGC 1 cut(s) 270
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 3 cut(s) 6, 20, 134
FokI GGATG 2 cut(s) 209, 259
Fsp4HI GCNGC 3 cut(s) 6, 20, 134
FspBI CTAG 1 cut(s) 261
GlaI GCGC 3 cut(s) 123, 137, 335
GluI GCNGC 3 cut(s) 6, 20, 134
HaeII RGCGCY 1 cut(s) 139
HaeIII GGCC 4 cut(s) 29, 269, 281, 311
HapII CCGG 2 cut(s) 139, 328
HhaI GCGC 3 cut(s) 124, 138, 336
Hin1I GRCGYC 1 cut(s) 136
Hin1II CATG 1 cut(s) 360
Hin6I GCGC 3 cut(s) 122, 136, 334
HinP1I GCGC 3 cut(s) 122, 136, 334
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 2 cut(s) 146, 293
HpaII CCGG 2 cut(s) 139, 328
HphI GGTGA 2 cut(s) 109, 203
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 1 cut(s) 36
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 1 cut(s) 208
HpyAV CCTTC 1 cut(s) 41
HpyCH4V TGCA 1 cut(s) 22
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 130, 266
HpyF3I CTNAG 1 cut(s) 182
Hsp92I GRCGYC 1 cut(s) 136
Hsp92II CATG 1 cut(s) 360
HspAI GCGC 3 cut(s) 122, 136, 334
KasI GGCGCC 1 cut(s) 135
Kzo9I GATC 1 cut(s) 36
LmnI GCTCC 3 cut(s) 79, 109, 257
LpnPI CCDG 7 cut(s) 8, 115, 149, 152, 176, 282, 341
Lsp1109I GCAGC 2 cut(s) 6, 17
MabI ACCWGGT 1 cut(s) 162
MaeI CTAG 1 cut(s) 261
MaeIII GTNAC 1 cut(s) 230
MalI GATC 1 cut(s) 38
MbiI CCGCTC 1 cut(s) 277
MboI GATC 1 cut(s) 36
MboII GAAGA 2 cut(s) 49, 112
Mly113I GGCGCC 1 cut(s) 136
MlyI GAGTC 1 cut(s) 140
MnlI CCTC 8 cut(s) 4, 73, 82, 96, 151, 187, 243, 259
MseI TTAA 1 cut(s) 339
MspI CCGG 2 cut(s) 139, 328
MspR9I CCNGG 2 cut(s) 140, 164
MvaI CCWGG 1 cut(s) 164
MvnI CGCG 2 cut(s) 71, 122
MwoI GCNNNNNNNGC 3 cut(s) 68, 130, 266
NarI GGCGCC 1 cut(s) 136
NciI CCSGG 1 cut(s) 140
NdeII GATC 1 cut(s) 36
NlaIII CATG 1 cut(s) 360
NlaIV GGNNCC 1 cut(s) 137
NmeAIII GCCGAG 1 cut(s) 128
PaqCI CACCTGC 1 cut(s) 13
PceI AGGCCT 1 cut(s) 269
PfeI GAWTC 1 cut(s) 293
PinAI ACCGGT 1 cut(s) 327
PkrI GCNGC 3 cut(s) 7, 21, 135
PleI GAGTC 1 cut(s) 140
PluTI GGCGCC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 140
PpuMI RGGWCCY 1 cut(s) 160
Psp5II RGGWCCY 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 162
PspGI CCWGG 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 137
PspPI GGNCC 5 cut(s) 28, 160, 279, 310, 325
PspPPI RGGWCCY 1 cut(s) 160
PstI CTGCAG 1 cut(s) 24
SalI GTCGAC 1 cut(s) 143
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 3 cut(s) 6, 20, 134
Sau3AI GATC 1 cut(s) 36
Sau96I GGNCC 5 cut(s) 28, 160, 279, 310, 325
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 2 cut(s) 140, 164
SetI ASST 6 cut(s) 15, 27, 114, 120, 165, 262
SexAI ACCWGGT 1 cut(s) 162
SfcI CTRYAG 1 cut(s) 20
SfoI GGCGCC 1 cut(s) 137
SinI GGWCC 2 cut(s) 160, 325
SseBI AGGCCT 1 cut(s) 269
SsiI CCGC 6 cut(s) 71, 107, 133, 152, 173, 277
SspDI GGCGCC 1 cut(s) 135
SspMI CTAG 1 cut(s) 261
StuI AGGCCT 1 cut(s) 269
StyD4I CCNGG 2 cut(s) 138, 162
TaqI TCGA 2 cut(s) 144, 156
TauI GCSGC 1 cut(s) 136
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 1 cut(s) 233
TseI GCWGC 2 cut(s) 5, 19
TspGWI ACGGA 1 cut(s) 270
TspRI CASTG 1 cut(s) 233
VpaK11BI GGWCC 2 cut(s) 160, 325
XmiI GTMKAC 1 cut(s) 144
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.