Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004173

Physical Location & Seq

Genomic Coordinates Reverse (-)

47907046 .. 47907765

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1387400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGATTTCCTTCAATCCCAACTCCGATACATCAATTCCCAAACAGAAGAATCCGCACCGATCGACCGGTCCCGAATCGCCAAGGACATTCTCCTCCAAGCCGGCCTAATCCTCGTCGTCGTCGTCGCCTTCCTCTCCATCCACAACATCCCCCAAAAGCTCATCGCCAACCTCCGCTACCGCTTCCGCAACAAACCCGCAGCCCAAGCCAAGCGCCACTTCGTCCTTGGCGCCCAGCTCCTTGGTCAGTCCCGATCCGCCAACTCCCGCTCCTCCACCGCCTCTCTCTCCCAGCAGGCCCTCGACGAGGCGGAGAAGGCCATCGCCCTCGACCCCAAGGACGCCGCCGCCCACATCCTCAAAGCCCTCGCCCTCGACGCCCAGGGATACAAGACCTCAGCCCTCGACGCCATCGACGTCGCGCTGTCCCCTCTCTGCCGGAAGAGCCTGACCGAAGAGGATCGCGGGGATGCGCTCGTCAAGAGGGCGGAGATCAAGCTGTCGATGAACCGGAAAGCCCGGGTTGACTCGGTGATCGAGGATTTGACTCGGGCCGTGGAGCTGAGTCCGGAAAATGTGAAGGCGTTTTGTACGTTGGGAGAGTGCTACGAGGGGAAGAAGATGGCGGAGGAGGCCAGGAAGGCTTACGAGGCGGCGCTGAAGGTCCAGCCCAGATTGAAAGCCGCCATGGACGCTCTGGAGCGACTCGGTTCGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2 TPR_8

Protein Analysis

240

Amino Acids

26.21

Weight (kDa)

9.2

Isoelectric Point (pI)

57.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65520
fragaria_vesca	FvH4_1g19520 FvH4_5g34561 FvH4_5g34561 FvH4_5g34561 FvH4_5g34561 FvH4_5g34561
malus_domestica	MD08G1200200.v1.1 MD15G1310800.v1.1 MD15G1387400.v1.1
prunus_persica	Prupe.1G533800_v2.0.a1 Prupe.6G203100_v2.0.a1
pyrus_communis	pycom01g06830 pycom08g17360 pycom15g34740
rosa_chinensis	RchiOBHm_Chr2g0111021 RchiOBHm_Chr7g0235251
rosa_laevigata	RLG00000017858
rosa_multiflora	Rmu_sc0003994.1_g000008 Rmu_sc0004637.1_g000006 Rmu_sc0004657.1_g000046 Rmu_sc0005947.1_g000017
rosa_roxburghii	Rroxscaffold_3G00226160 Rroxscaffold_4G00298550 Rroxscaffold_7G00215170
rosa_rugosa	Rorug02G0170600 Rorug07G0289300
rosa_samantha	Rh2AG222600 Rh2BG234700 Rh2CG226000 Rh2DG230500
rosa_wichuraiana	Rw2G017200 Rw7G036900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	420
AccB1I	GGYRCC	1 cut(s)	230
AccBSI	CCGCTC	1 cut(s)	270
AccII	CGCG	2 cut(s)	422, 465
AccIII	TCCGGA	1 cut(s)	568
AclWI	GGATC	2 cut(s)	249, 468
AcuI	CTGAAG	1 cut(s)	680
AcyI	GRCGYC	5 cut(s)	231, 342, 378, 408, 417
AfaI	GTAC	1 cut(s)	592
AfiI	CCNNNNNNNGG	1 cut(s)	307
AgeI	ACCGGT	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	14, 679
AjnI	CCWGG	2 cut(s)	381, 635
AjuI	GAANNNNNNNTTGG	2 cut(s)	203, 235
AluBI	AGCT	4 cut(s)	160, 238, 499, 562
AluI	AGCT	4 cut(s)	160, 238, 499, 562
AlwI	GGATC	2 cut(s)	249, 468
Ama87I	CYCGRG	2 cut(s)	519, 549
Aor13HI	TCCGGA	1 cut(s)	568
AoxI	GGCC	5 cut(s)	103, 297, 318, 552, 633
ApeKI	GCWGC	1 cut(s)	200
AsiGI	ACCGGT	1 cut(s)	66
AspLEI	GCGC	5 cut(s)	216, 233, 424, 475, 658
AspS9I	GGNCC	4 cut(s)	69, 298, 552, 664
AsuC2I	CCSGG	2 cut(s)	520, 521
AsuHPI	GGTGA	1 cut(s)	544
AvaI	CYCGRG	2 cut(s)	519, 549
AvaII	GGWCC	2 cut(s)	69, 664
BanI	GGYRCC	1 cut(s)	230
BbvCI	CCTCAGC	1 cut(s)	397
BbvI	GCAGC	1 cut(s)	212
BccI	CCATC	4 cut(s)	146, 329, 419, 616
BceAI	ACGGC	1 cut(s)	539
BciT130I	CCWGG	2 cut(s)	383, 637
BciVI	GTATCC	1 cut(s)	380
BcnI	CCSGG	2 cut(s)	520, 521
BfoI	RGCGCY	3 cut(s)	217, 234, 659
BfuI	GTATCC	1 cut(s)	380
BglI	GCCNNNNNGGC	1 cut(s)	641
BisI	GCNGC	5 cut(s)	201, 345, 348, 654, 684
BlsI	GCNGC	5 cut(s)	202, 346, 349, 655, 685
Bme1390I	CCNGG	4 cut(s)	383, 520, 521, 637
Bme18I	GGWCC	2 cut(s)	69, 664
BmeT110I	CYCGRG	2 cut(s)	519, 549
BmgT120I	GGNCC	4 cut(s)	69, 298, 552, 664
BmiI	GGNNCC	2 cut(s)	71, 232
BmrFI	CCNGG	4 cut(s)	383, 520, 521, 637
BmsI	GCATC	1 cut(s)	460
BpmI	CTGGAG	1 cut(s)	719
Bpu10I	CCTNAGC	1 cut(s)	397
BpuMI	CCSGG	2 cut(s)	520, 521
BsaHI	GRCGYC	5 cut(s)	231, 342, 378, 408, 417
BsaJI	CCNNGG	9 cut(s)	81, 226, 241, 336, 381, 382, 519, 555, 687
BsaWI	WCCGGW	3 cut(s)	66, 510, 568
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse118I	RCCGGY	2 cut(s)	66, 101
BseAI	TCCGGA	1 cut(s)	568
BseBI	CCWGG	2 cut(s)	383, 637
BseDI	CCNNGG	9 cut(s)	81, 226, 241, 336, 381, 382, 519, 555, 687
BseGI	GGATG	4 cut(s)	138, 147, 354, 475
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMII	CTCAG	2 cut(s)	411, 554
BseRI	GAGGAG	3 cut(s)	83, 262, 644
BseXI	GCAGC	1 cut(s)	212
BseYI	CCCAGC	2 cut(s)	234, 291
Bsh1236I	CGCG	2 cut(s)	422, 465
Bsh1285I	CGRYCG	2 cut(s)	63, 67
BshFI	GGCC	5 cut(s)	105, 299, 320, 554, 635
BshNI	GGYRCC	1 cut(s)	230
BshTI	ACCGGT	1 cut(s)	66
BsiEI	CGRYCG	2 cut(s)	63, 67
BsiHKCI	CYCGRG	2 cut(s)	519, 549
BsiSI	CCGG	6 cut(s)	67, 102, 439, 511, 520, 569
BslFI	GGGAC	3 cut(s)	55, 235, 412
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmFI	GGGAC	3 cut(s)	55, 235, 412
BsnI	GGCC	5 cut(s)	105, 299, 320, 554, 635
BsoBI	CYCGRG	2 cut(s)	519, 549
Bsp13I	TCCGGA	1 cut(s)	568
Bsp143I	GATC	5 cut(s)	60, 254, 460, 492, 534
Bsp19I	CCATGG	1 cut(s)	687
BspANI	GGCC	5 cut(s)	105, 299, 320, 554, 635
BspCNI	CTCAG	2 cut(s)	410, 555
BspEI	TCCGGA	1 cut(s)	568
BspFNI	CGCG	2 cut(s)	422, 465
BspLI	GGNNCC	2 cut(s)	71, 232
BspPI	GGATC	2 cut(s)	249, 468
BspQI	GCTCTTC	1 cut(s)	437
BspT107I	GGYRCC	1 cut(s)	230
BsrBI	CCGCTC	1 cut(s)	270
BsrFI	RCCGGY	2 cut(s)	66, 101
BssAI	RCCGGY	2 cut(s)	66, 101
BssECI	CCNNGG	9 cut(s)	81, 226, 241, 336, 381, 382, 519, 555, 687
BssMI	GATC	5 cut(s)	60, 254, 460, 492, 534
BssNI	GRCGYC	5 cut(s)	231, 342, 378, 408, 417
BssT1I	CCWWGG	5 cut(s)	81, 226, 241, 336, 687
Bst2UI	CCWGG	2 cut(s)	383, 637
Bst6I	CTCTTC	2 cut(s)	437, 450
BstACI	GRCGYC	5 cut(s)	231, 342, 378, 408, 417
BstC8I	GCNNGC	2 cut(s)	103, 297
BstDEI	CTNAG	2 cut(s)	397, 563
BstDSI	CCRYGG	2 cut(s)	555, 687
BstENI	CCTNNNNNAGG	1 cut(s)	305
BstF5I	GGATG	4 cut(s)	138, 147, 354, 475
BstFNI	CGCG	2 cut(s)	422, 465
BstH2I	RGCGCY	3 cut(s)	217, 234, 659
BstHHI	GCGC	5 cut(s)	216, 233, 424, 475, 658
BstKTI	GATC	5 cut(s)	63, 257, 463, 495, 537
BstMBI	GATC	5 cut(s)	60, 254, 460, 492, 534
BstMCI	CGRYCG	2 cut(s)	63, 67
BstMWI	GCNNNNNNNGC	9 cut(s)	206, 317, 377, 407, 444, 632, 641, 650, 692
BstNI	CCWGG	2 cut(s)	383, 637
BstSCI	CCNGG	4 cut(s)	381, 518, 519, 635
BstUI	CGCG	2 cut(s)	422, 465
BstV1I	GCAGC	1 cut(s)	212
BstXI	CCANNNNNNTGG	1 cut(s)	242
BsuI	GTATCC	1 cut(s)	380
BsuRI	GGCC	5 cut(s)	105, 299, 320, 554, 635
BtgI	CCRYGG	2 cut(s)	555, 687
BtgZI	GCGATG	2 cut(s)	148, 307
BtsCI	GGATG	4 cut(s)	138, 147, 354, 475
Cac8I	GCNNGC	2 cut(s)	103, 297
CfoI	GCGC	5 cut(s)	216, 233, 424, 475, 658
Cfr10I	RCCGGY	2 cut(s)	66, 101
Cfr13I	GGNCC	4 cut(s)	69, 298, 552, 664
Cfr9I	CCCGGG	1 cut(s)	519
CseI	GACGC	4 cut(s)	350, 386, 416, 701
Csp6I	GTAC	1 cut(s)	591
CspAI	ACCGGT	1 cut(s)	66
CviAII	CATG	1 cut(s)	688
CviQI	GTAC	1 cut(s)	591
DdeI	CTNAG	2 cut(s)	397, 563
DinI	GGCGCC	1 cut(s)	232
DpnI	GATC	5 cut(s)	62, 256, 462, 494, 536
DpnII	GATC	5 cut(s)	60, 254, 460, 492, 534
Eam1104I	CTCTTC	2 cut(s)	437, 450
EarI	CTCTTC	2 cut(s)	437, 450
EciI	GGCGGA	4 cut(s)	247, 326, 503, 641
Eco130I	CCWWGG	5 cut(s)	81, 226, 241, 336, 687
Eco47I	GGWCC	2 cut(s)	69, 664
Eco57I	CTGAAG	1 cut(s)	680
Eco88I	CYCGRG	2 cut(s)	519, 549
EcoNI	CCTNNNNNAGG	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	298
EcoRII	CCWGG	2 cut(s)	381, 635
EcoT14I	CCWWGG	5 cut(s)	81, 226, 241, 336, 687
EgeI	GGCGCC	1 cut(s)	232
EheI	GGCGCC	1 cut(s)	232
ErhI	CCWWGG	5 cut(s)	81, 226, 241, 336, 687
FaeI	CATG	1 cut(s)	691
FaiI	YATR	1 cut(s)	689
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FaqI	GGGAC	3 cut(s)	55, 235, 412
FatI	CATG	1 cut(s)	687
FauI	CCCGC	3 cut(s)	205, 275, 458
Fnu4HI	GCNGC	5 cut(s)	201, 345, 348, 654, 684
FokI	GGATG	4 cut(s)	125, 134, 341, 482
Fsp4HI	GCNGC	5 cut(s)	201, 345, 348, 654, 684
GlaI	GCGC	5 cut(s)	215, 232, 423, 474, 657
GluI	GCNGC	5 cut(s)	201, 345, 348, 654, 684
GsaI	CCCAGC	2 cut(s)	238, 295
GsuI	CTGGAG	1 cut(s)	719
HaeII	RGCGCY	3 cut(s)	217, 234, 659
HaeIII	GGCC	5 cut(s)	105, 299, 320, 554, 635
HapII	CCGG	6 cut(s)	67, 102, 439, 511, 520, 569
HgaI	GACGC	4 cut(s)	350, 386, 416, 701
HhaI	GCGC	5 cut(s)	216, 233, 424, 475, 658
Hin1I	GRCGYC	5 cut(s)	231, 342, 378, 408, 417
Hin1II	CATG	1 cut(s)	691
Hin6I	GCGC	5 cut(s)	214, 231, 422, 473, 656
HinP1I	GCGC	5 cut(s)	214, 231, 422, 473, 656
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HinfI	GANTC	6 cut(s)	50, 75, 527, 547, 565, 705
HpaII	CCGG	6 cut(s)	67, 102, 439, 511, 520, 569
HphI	GGTGA	1 cut(s)	544
Hpy166II	GTNNAC	1 cut(s)	526
Hpy188I	TCNGA	1 cut(s)	26
Hpy188III	TCNNGA	5 cut(s)	72, 252, 481, 569, 698
Hpy8I	GTNNAC	1 cut(s)	526
Hpy99I	CGWCG	9 cut(s)	119, 122, 125, 128, 308, 380, 410, 419, 422
HpyAV	CCTTC	6 cut(s)	20, 139, 310, 574, 634, 655
HpyCH4IV	ACGT	2 cut(s)	417, 593
HpyF10VI	GCNNNNNNNGC	9 cut(s)	206, 317, 377, 407, 444, 632, 641, 650, 692
HpyF3I	CTNAG	2 cut(s)	397, 563
HpySE526I	ACGT	2 cut(s)	417, 593
Hsp92I	GRCGYC	5 cut(s)	231, 342, 378, 408, 417
Hsp92II	CATG	1 cut(s)	691
HspAI	GCGC	5 cut(s)	214, 231, 422, 473, 656
KasI	GGCGCC	1 cut(s)	230
Kpn2I	TCCGGA	1 cut(s)	568
KroI	GCCGGC	1 cut(s)	101
KroNI	GCCGGC	1 cut(s)	103
Kzo9I	GATC	5 cut(s)	60, 254, 460, 492, 534
LguI	GCTCTTC	1 cut(s)	437
LmnI	GCTCC	4 cut(s)	243, 275, 559, 700
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	1 cut(s)	460
MaeII	ACGT	2 cut(s)	417, 593
MalI	GATC	5 cut(s)	62, 256, 462, 494, 536
MbiI	CCGCTC	1 cut(s)	270
MboI	GATC	5 cut(s)	60, 254, 460, 492, 534
MboII	GAAGA	5 cut(s)	59, 454, 467, 628, 631
MluCI	AATT	1 cut(s)	34
Mly113I	GGCGCC	1 cut(s)	231
MlyI	GAGTC	4 cut(s)	521, 541, 574, 699
MroI	TCCGGA	1 cut(s)	568
MroNI	GCCGGC	1 cut(s)	101
MseI	TTAA	1 cut(s)	718
MspI	CCGG	6 cut(s)	67, 102, 439, 511, 520, 569
MspR9I	CCNGG	4 cut(s)	383, 520, 521, 637
MvaI	CCWGG	2 cut(s)	383, 637
MvnI	CGCG	2 cut(s)	422, 465
MwoI	GCNNNNNNNGC	9 cut(s)	206, 317, 377, 407, 444, 632, 641, 650, 692
NaeI	GCCGGC	1 cut(s)	103
NarI	GGCGCC	1 cut(s)	231
NciI	CCSGG	2 cut(s)	520, 521
NcoI	CCATGG	1 cut(s)	687
NdeII	GATC	5 cut(s)	60, 254, 460, 492, 534
NgoMIV	GCCGGC	1 cut(s)	101
NlaIII	CATG	1 cut(s)	691
NlaIV	GGNNCC	2 cut(s)	71, 232
PasI	CCCWGGG	1 cut(s)	382
PciSI	GCTCTTC	1 cut(s)	437
PcsI	WCGNNNNNNNCGW	3 cut(s)	120, 411, 414
PdiI	GCCGGC	1 cut(s)	103
PfeI	GAWTC	2 cut(s)	50, 75
PinAI	ACCGGT	1 cut(s)	66
PkrI	GCNGC	5 cut(s)	202, 346, 349, 655, 685
Ple19I	CGATCG	1 cut(s)	63
PleI	GAGTC	4 cut(s)	521, 541, 573, 699
PluTI	GGCGCC	1 cut(s)	234
PpsI	GAGTC	4 cut(s)	521, 541, 573, 699
Psp6I	CCWGG	2 cut(s)	381, 635
PspFI	CCCAGC	2 cut(s)	234, 291
PspGI	CCWGG	2 cut(s)	381, 635
PspN4I	GGNNCC	2 cut(s)	71, 232
PspPI	GGNCC	4 cut(s)	69, 298, 552, 664
PvuI	CGATCG	1 cut(s)	63
RsaI	GTAC	1 cut(s)	592
RsaNI	GTAC	1 cut(s)	591
SapI	GCTCTTC	1 cut(s)	437
SaqAI	TTAA	1 cut(s)	718
SatI	GCNGC	5 cut(s)	201, 345, 348, 654, 684
Sau3AI	GATC	5 cut(s)	60, 254, 460, 492, 534
Sau96I	GGNCC	4 cut(s)	69, 298, 552, 664
SchI	GAGTC	4 cut(s)	521, 541, 574, 699
ScrFI	CCNGG	4 cut(s)	383, 520, 521, 637
SetI	ASST	9 cut(s)	162, 174, 240, 398, 420, 501, 564, 596, 666
SfaNI	GCATC	1 cut(s)	460
SfoI	GGCGCC	1 cut(s)	232
SinI	GGWCC	2 cut(s)	69, 664
SmaI	CCCGGG	1 cut(s)	521
Sse9I	AATT	1 cut(s)	34
SspDI	GGCGCC	1 cut(s)	230
StyD4I	CCNGG	4 cut(s)	381, 518, 519, 635
StyI	CCWWGG	5 cut(s)	81, 226, 241, 336, 687
TaiI	ACGT	2 cut(s)	420, 596
TaqI	TCGA	8 cut(s)	63, 303, 330, 375, 405, 414, 503, 537
TaqII	GACCGA	1 cut(s)	467
TasI	AATT	1 cut(s)	34
TauI	GCSGC	4 cut(s)	347, 350, 656, 686
TfiI	GAWTC	2 cut(s)	50, 75
Tru1I	TTAA	1 cut(s)	718
Tru9I	TTAA	1 cut(s)	718
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	1 cut(s)	521
TspMI	CCCGGG	1 cut(s)	519
VpaK11BI	GGWCC	2 cut(s)	69, 664
XagI	CCTNNNNNAGG	1 cut(s)	305
XcmI	CCANNNNNNNNNTGG	2 cut(s)	224, 694
XmaI	CCCGGG	1 cut(s)	519
ZraI	GACGTC	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.