Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004173

Physical Location & Seq

Genomic Coordinates Reverse (-)

34529342 .. 34530061

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g34740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGATTTCCTTCAATCCCAACTCCGATACATCAATTCCCAAACAGATGAATCCGCACCGATCGACCGGTCCCGAATCGCCAAGGACATTCTCCTCCAGGCCTGCCTAATCCTCGTCGTCGTCGTCGCCTTCCTCTCCATCCACAACATCCCCCAAAAACTCATCGCCAACCTCCGCTACCGCTTCCGCAACAAACCCGCAGCCCAAGCCAAGCGTCACTTCGTCCTTGGCGCCCAGCTCCTCGGTCAGTCCCGATCCGCCAACTCCCGCTCCTCCTCCGCCTCCCTCTCCCAGCAGGCCCTCGACGAGGCCGAGAAGGCTATCGCCCTCGACCCCAAGGACGCCGCCGCCCACATCCTCAAAGCCCTCACCCTCGACGCCCAGGGATACAAGACCTCAGCCCTCGACGCCATCGACGTCGCTCTATCCCCTCTCTGCCGGAAGAGCCTGACCGAAGAGGATCGCGGGGATGCGCTTGTCAAGAGGGCGGAGATCAAGCTGTCGATGAACCGGAAAGCCCGGGTTGACTCGGTGATCGAGGATTTGACTCGGGCTGTGGAGCTGAGTCCGGAAAATGTGAAGGCGTTTTGTACGTTGGGAGAGTGCTATGAGGGGAAGAAGATGGCGGAGGAGGCCAGGAAGGCTTACGAGGCGGCGCTGAAGGTCCAGCCCAGATTGAAAGCCGCCAAGGACGCTCTGGACCGACTCGGTTCGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2 TPR_8

Protein Analysis

240

Amino Acids

26.24

Weight (kDa)

9.23

Isoelectric Point (pI)

58.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65520
fragaria_vesca	FvH4_1g19520 FvH4_5g34561 FvH4_5g34561 FvH4_5g34561 FvH4_5g34561 FvH4_5g34561
malus_domestica	MD08G1200200.v1.1 MD15G1310800.v1.1 MD15G1387400.v1.1
prunus_persica	Prupe.1G533800_v2.0.a1 Prupe.6G203100_v2.0.a1
pyrus_communis	pycom01g06830 pycom08g17360 pycom15g34740
rosa_chinensis	RchiOBHm_Chr2g0111021 RchiOBHm_Chr7g0235251
rosa_laevigata	RLG00000017858
rosa_multiflora	Rmu_sc0003994.1_g000008 Rmu_sc0004637.1_g000006 Rmu_sc0004657.1_g000046 Rmu_sc0005947.1_g000017
rosa_roxburghii	Rroxscaffold_3G00226160 Rroxscaffold_4G00298550 Rroxscaffold_7G00215170
rosa_rugosa	Rorug02G0170600 Rorug07G0289300
rosa_samantha	Rh2AG222600 Rh2BG234700 Rh2CG226000 Rh2DG230500
rosa_wichuraiana	Rw2G017200 Rw7G036900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	420
AccB1I	GGYRCC	1 cut(s)	230
AccBSI	CCGCTC	1 cut(s)	270
AccII	CGCG	1 cut(s)	465
AccIII	TCCGGA	1 cut(s)	568
AclWI	GGATC	2 cut(s)	249, 468
AcuI	CTGAAG	1 cut(s)	680
AcyI	GRCGYC	5 cut(s)	231, 342, 378, 408, 417
AfaI	GTAC	1 cut(s)	592
AfiI	CCNNNNNNNGG	1 cut(s)	307
AgeI	ACCGGT	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	14, 679
AjnI	CCWGG	3 cut(s)	96, 381, 635
AjuI	GAANNNNNNNTTGG	2 cut(s)	203, 235
AluBI	AGCT	3 cut(s)	238, 499, 562
AluI	AGCT	3 cut(s)	238, 499, 562
AlwI	GGATC	2 cut(s)	249, 468
Ama87I	CYCGRG	2 cut(s)	519, 549
Aor13HI	TCCGGA	1 cut(s)	568
AoxI	GGCC	4 cut(s)	99, 297, 309, 633
ApeKI	GCWGC	1 cut(s)	200
AsiGI	ACCGGT	1 cut(s)	66
AspLEI	GCGC	3 cut(s)	233, 475, 658
AspS9I	GGNCC	4 cut(s)	69, 298, 664, 700
AsuC2I	CCSGG	2 cut(s)	520, 521
AsuHPI	GGTGA	2 cut(s)	361, 544
AvaI	CYCGRG	2 cut(s)	519, 549
AvaII	GGWCC	3 cut(s)	69, 664, 700
BanI	GGYRCC	1 cut(s)	230
BbvCI	CCTCAGC	1 cut(s)	397
BbvI	GCAGC	1 cut(s)	212
BccI	CCATC	3 cut(s)	146, 419, 616
BciT130I	CCWGG	3 cut(s)	98, 383, 637
BciVI	GTATCC	1 cut(s)	380
BcnI	CCSGG	2 cut(s)	520, 521
BfoI	RGCGCY	2 cut(s)	234, 659
BfuI	GTATCC	1 cut(s)	380
BglI	GCCNNNNNGGC	2 cut(s)	317, 641
BisI	GCNGC	5 cut(s)	201, 345, 348, 654, 684
BlsI	GCNGC	5 cut(s)	202, 346, 349, 655, 685
Bme1390I	CCNGG	5 cut(s)	98, 383, 520, 521, 637
Bme18I	GGWCC	3 cut(s)	69, 664, 700
BmeT110I	CYCGRG	2 cut(s)	519, 549
BmgT120I	GGNCC	4 cut(s)	69, 298, 664, 700
BmiI	GGNNCC	2 cut(s)	71, 232
BmrFI	CCNGG	5 cut(s)	98, 383, 520, 521, 637
BmsI	GCATC	1 cut(s)	460
BpmI	CTGGAG	1 cut(s)	80
Bpu10I	CCTNAGC	1 cut(s)	397
BpuMI	CCSGG	2 cut(s)	520, 521
BsaHI	GRCGYC	5 cut(s)	231, 342, 378, 408, 417
BsaJI	CCNNGG	8 cut(s)	81, 226, 241, 336, 381, 382, 519, 687
BsaWI	WCCGGW	3 cut(s)	66, 510, 568
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse118I	RCCGGY	1 cut(s)	66
BseAI	TCCGGA	1 cut(s)	568
BseBI	CCWGG	3 cut(s)	98, 383, 637
BseDI	CCNNGG	8 cut(s)	81, 226, 241, 336, 381, 382, 519, 687
BseGI	GGATG	4 cut(s)	138, 147, 354, 475
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMII	CTCAG	2 cut(s)	411, 554
BseRI	GAGGAG	5 cut(s)	83, 230, 262, 265, 644
BseXI	GCAGC	1 cut(s)	212
BseYI	CCCAGC	2 cut(s)	234, 291
Bsh1236I	CGCG	1 cut(s)	465
Bsh1285I	CGRYCG	2 cut(s)	63, 67
BshFI	GGCC	4 cut(s)	101, 299, 311, 635
BshNI	GGYRCC	1 cut(s)	230
BshTI	ACCGGT	1 cut(s)	66
BsiEI	CGRYCG	2 cut(s)	63, 67
BsiHKCI	CYCGRG	2 cut(s)	519, 549
BsiSI	CCGG	5 cut(s)	67, 439, 511, 520, 569
BslFI	GGGAC	2 cut(s)	55, 235
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmFI	GGGAC	2 cut(s)	55, 235
BsnI	GGCC	4 cut(s)	101, 299, 311, 635
BsoBI	CYCGRG	2 cut(s)	519, 549
Bsp13I	TCCGGA	1 cut(s)	568
Bsp143I	GATC	5 cut(s)	60, 254, 460, 492, 534
BspANI	GGCC	4 cut(s)	101, 299, 311, 635
BspCNI	CTCAG	2 cut(s)	410, 555
BspEI	TCCGGA	1 cut(s)	568
BspFNI	CGCG	1 cut(s)	465
BspLI	GGNNCC	2 cut(s)	71, 232
BspPI	GGATC	2 cut(s)	249, 468
BspQI	GCTCTTC	1 cut(s)	437
BspT107I	GGYRCC	1 cut(s)	230
BsrBI	CCGCTC	1 cut(s)	270
BsrFI	RCCGGY	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	8 cut(s)	81, 226, 241, 336, 381, 382, 519, 687
BssMI	GATC	5 cut(s)	60, 254, 460, 492, 534
BssNI	GRCGYC	5 cut(s)	231, 342, 378, 408, 417
BssT1I	CCWWGG	4 cut(s)	81, 226, 336, 687
Bst2UI	CCWGG	3 cut(s)	98, 383, 637
Bst6I	CTCTTC	2 cut(s)	437, 450
BstACI	GRCGYC	5 cut(s)	231, 342, 378, 408, 417
BstC8I	GCNNGC	2 cut(s)	103, 297
BstDEI	CTNAG	3 cut(s)	397, 563, 717
BstENI	CCTNNNNNAGG	1 cut(s)	305
BstF5I	GGATG	4 cut(s)	138, 147, 354, 475
BstFNI	CGCG	1 cut(s)	465
BstH2I	RGCGCY	2 cut(s)	234, 659
BstHHI	GCGC	3 cut(s)	233, 475, 658
BstKTI	GATC	5 cut(s)	63, 257, 463, 495, 537
BstMBI	GATC	5 cut(s)	60, 254, 460, 492, 534
BstMCI	CGRYCG	2 cut(s)	63, 67
BstMWI	GCNNNNNNNGC	8 cut(s)	206, 317, 407, 444, 632, 641, 650, 692
BstNI	CCWGG	3 cut(s)	98, 383, 637
BstSCI	CCNGG	5 cut(s)	96, 381, 518, 519, 635
BstUI	CGCG	1 cut(s)	465
BstV1I	GCAGC	1 cut(s)	212
BsuI	GTATCC	1 cut(s)	380
BsuRI	GGCC	4 cut(s)	101, 299, 311, 635
BtgZI	GCGATG	1 cut(s)	148
BtsCI	GGATG	4 cut(s)	138, 147, 354, 475
Cac8I	GCNNGC	2 cut(s)	103, 297
CfoI	GCGC	3 cut(s)	233, 475, 658
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	4 cut(s)	69, 298, 664, 700
Cfr9I	CCCGGG	1 cut(s)	519
CseI	GACGC	5 cut(s)	203, 350, 386, 416, 701
Csp6I	GTAC	1 cut(s)	591
CspAI	ACCGGT	1 cut(s)	66
CviQI	GTAC	1 cut(s)	591
DdeI	CTNAG	3 cut(s)	397, 563, 717
DinI	GGCGCC	1 cut(s)	232
DpnI	GATC	5 cut(s)	62, 256, 462, 494, 536
DpnII	GATC	5 cut(s)	60, 254, 460, 492, 534
Eam1104I	CTCTTC	2 cut(s)	437, 450
EarI	CTCTTC	2 cut(s)	437, 450
EciI	GGCGGA	4 cut(s)	247, 268, 503, 641
Eco130I	CCWWGG	4 cut(s)	81, 226, 336, 687
Eco147I	AGGCCT	1 cut(s)	101
Eco47I	GGWCC	3 cut(s)	69, 664, 700
Eco57I	CTGAAG	1 cut(s)	680
Eco88I	CYCGRG	2 cut(s)	519, 549
EcoNI	CCTNNNNNAGG	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	298
EcoRII	CCWGG	3 cut(s)	96, 381, 635
EcoT14I	CCWWGG	4 cut(s)	81, 226, 336, 687
EgeI	GGCGCC	1 cut(s)	232
EheI	GGCGCC	1 cut(s)	232
ErhI	CCWWGG	4 cut(s)	81, 226, 336, 687
FaiI	YATR	1 cut(s)	609
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FaqI	GGGAC	2 cut(s)	55, 235
FauI	CCCGC	3 cut(s)	205, 275, 458
Fnu4HI	GCNGC	5 cut(s)	201, 345, 348, 654, 684
FokI	GGATG	4 cut(s)	125, 134, 341, 482
Fsp4HI	GCNGC	5 cut(s)	201, 345, 348, 654, 684
GlaI	GCGC	3 cut(s)	232, 474, 657
GluI	GCNGC	5 cut(s)	201, 345, 348, 654, 684
GsaI	CCCAGC	2 cut(s)	238, 295
GsuI	CTGGAG	1 cut(s)	80
HaeII	RGCGCY	2 cut(s)	234, 659
HaeIII	GGCC	4 cut(s)	101, 299, 311, 635
HapII	CCGG	5 cut(s)	67, 439, 511, 520, 569
HgaI	GACGC	5 cut(s)	203, 350, 386, 416, 701
HhaI	GCGC	3 cut(s)	233, 475, 658
Hin1I	GRCGYC	5 cut(s)	231, 342, 378, 408, 417
Hin6I	GCGC	3 cut(s)	231, 473, 656
HinP1I	GCGC	3 cut(s)	231, 473, 656
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HinfI	GANTC	6 cut(s)	50, 75, 527, 547, 565, 705
HpaII	CCGG	5 cut(s)	67, 439, 511, 520, 569
HphI	GGTGA	2 cut(s)	361, 544
Hpy166II	GTNNAC	1 cut(s)	526
Hpy188I	TCNGA	1 cut(s)	26
Hpy188III	TCNNGA	5 cut(s)	72, 252, 481, 569, 698
Hpy8I	GTNNAC	1 cut(s)	526
Hpy99I	CGWCG	9 cut(s)	119, 122, 125, 128, 308, 380, 410, 419, 422
HpyAV	CCTTC	6 cut(s)	20, 139, 310, 574, 634, 655
HpyCH4IV	ACGT	2 cut(s)	417, 593
HpyF10VI	GCNNNNNNNGC	8 cut(s)	206, 317, 407, 444, 632, 641, 650, 692
HpyF3I	CTNAG	3 cut(s)	397, 563, 717
HpySE526I	ACGT	2 cut(s)	417, 593
Hsp92I	GRCGYC	5 cut(s)	231, 342, 378, 408, 417
HspAI	GCGC	3 cut(s)	231, 473, 656
KasI	GGCGCC	1 cut(s)	230
Kpn2I	TCCGGA	1 cut(s)	568
Kzo9I	GATC	5 cut(s)	60, 254, 460, 492, 534
LguI	GCTCTTC	1 cut(s)	437
LmnI	GCTCC	3 cut(s)	243, 275, 559
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	1 cut(s)	460
MaeII	ACGT	2 cut(s)	417, 593
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	5 cut(s)	62, 256, 462, 494, 536
MbiI	CCGCTC	1 cut(s)	270
MboI	GATC	5 cut(s)	60, 254, 460, 492, 534
MboII	GAAGA	4 cut(s)	454, 467, 628, 631
MluCI	AATT	1 cut(s)	34
Mly113I	GGCGCC	1 cut(s)	231
MlyI	GAGTC	4 cut(s)	521, 541, 574, 699
MroI	TCCGGA	1 cut(s)	568
MspI	CCGG	5 cut(s)	67, 439, 511, 520, 569
MspR9I	CCNGG	5 cut(s)	98, 383, 520, 521, 637
MvaI	CCWGG	3 cut(s)	98, 383, 637
MvnI	CGCG	1 cut(s)	465
MwoI	GCNNNNNNNGC	8 cut(s)	206, 317, 407, 444, 632, 641, 650, 692
NarI	GGCGCC	1 cut(s)	231
NciI	CCSGG	2 cut(s)	520, 521
NdeII	GATC	5 cut(s)	60, 254, 460, 492, 534
NlaIV	GGNNCC	2 cut(s)	71, 232
NmeAIII	GCCGAG	1 cut(s)	337
NmuCI	GTSAC	1 cut(s)	215
PasI	CCCWGGG	1 cut(s)	382
PceI	AGGCCT	1 cut(s)	101
PciSI	GCTCTTC	1 cut(s)	437
PcsI	WCGNNNNNNNCGW	4 cut(s)	120, 309, 411, 414
PfeI	GAWTC	2 cut(s)	50, 75
PinAI	ACCGGT	1 cut(s)	66
PkrI	GCNGC	5 cut(s)	202, 346, 349, 655, 685
Ple19I	CGATCG	1 cut(s)	63
PleI	GAGTC	4 cut(s)	521, 541, 573, 699
PluTI	GGCGCC	1 cut(s)	234
PpsI	GAGTC	4 cut(s)	521, 541, 573, 699
Psp6I	CCWGG	3 cut(s)	96, 381, 635
PspFI	CCCAGC	2 cut(s)	234, 291
PspGI	CCWGG	3 cut(s)	96, 381, 635
PspN4I	GGNNCC	2 cut(s)	71, 232
PspPI	GGNCC	4 cut(s)	69, 298, 664, 700
PvuI	CGATCG	1 cut(s)	63
RsaI	GTAC	1 cut(s)	592
RsaNI	GTAC	1 cut(s)	591
SapI	GCTCTTC	1 cut(s)	437
SatI	GCNGC	5 cut(s)	201, 345, 348, 654, 684
Sau3AI	GATC	5 cut(s)	60, 254, 460, 492, 534
Sau96I	GGNCC	4 cut(s)	69, 298, 664, 700
SchI	GAGTC	4 cut(s)	521, 541, 574, 699
ScrFI	CCNGG	5 cut(s)	98, 383, 520, 521, 637
SetI	ASST	8 cut(s)	174, 240, 398, 420, 501, 564, 596, 666
SfaNI	GCATC	1 cut(s)	460
SfoI	GGCGCC	1 cut(s)	232
SinI	GGWCC	3 cut(s)	69, 664, 700
SmaI	CCCGGG	1 cut(s)	521
Sse9I	AATT	1 cut(s)	34
SseBI	AGGCCT	1 cut(s)	101
SspDI	GGCGCC	1 cut(s)	230
StuI	AGGCCT	1 cut(s)	101
StyD4I	CCNGG	5 cut(s)	96, 381, 518, 519, 635
StyI	CCWWGG	4 cut(s)	81, 226, 336, 687
TaiI	ACGT	2 cut(s)	420, 596
TaqI	TCGA	8 cut(s)	63, 303, 330, 375, 405, 414, 503, 537
TaqII	GACCGA	3 cut(s)	233, 467, 717
TasI	AATT	1 cut(s)	34
TauI	GCSGC	4 cut(s)	347, 350, 656, 686
TfiI	GAWTC	2 cut(s)	50, 75
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	2 cut(s)	63, 521
TspMI	CCCGGG	1 cut(s)	519
VpaK11BI	GGWCC	3 cut(s)	69, 664, 700
XagI	CCTNNNNNAGG	1 cut(s)	305
XcmI	CCANNNNNNNNNTGG	1 cut(s)	694
XmaI	CCCGGG	1 cut(s)	519
ZraI	GACGTC	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.