Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005514

Physical Location & Seq

Genomic Coordinates Reverse (-)

3381526 .. 3382715

Gene Structure 1190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g06390.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGAAGAAGAGCGGAAACGGGAAGAGTCACAAAGGAAATGCAAGAGAGGATCAGGTGAAGAAGGACAGGAGATCAGGGTCGGGCATGAATGGATCGCCCAAGAAAGGTGGCCATGGCGGCAAGTTCACATGGGCCGGCGATCTGGGATACTCCACAGCCGAGATGGGCATCCAGAAGGAGGTCATCGATGCCAAGGATCCGAATTTTGAAGACAAAGTTGAGATCCCAAGCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

79

Amino Acids

8.36

Weight (kDa)

9.48

Isoelectric Point (pI)

20.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005514)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06390
prunus_persica	Prupe.7G218200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0092131
rosa_laevigata	RLG00000016276 RLG00000017332 RLG00000026233
rosa_multiflora	Rmu_sc0000218.1_g000035 Rmu_sc0002316.1_g000052 Rmu_sc0013552.1_g000003 Rmu_sc0039110.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149470
rosa_rugosa	Rorug02G0022900 Rorug02G0202800 Rorug02G0487900 Rorug04G0137700 Rorug04G0224400 Rorug05G0380400
rosa_samantha	Rh1DG169300 Rh2AG068700 Rh2AG499500 Rh2BG068000 Rh2DG281100 Rh3AG180300 Rh3BG206500 Rh3CG203600 Rh3CG221900
rosa_wichuraiana	Rw2G005270 Rw2G041000 Rw5G022820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	12
AciI	CCGC	2 cut(s)	12, 117
AclWI	GGATC	5 cut(s)	57, 100, 191, 204, 217
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	202
AfiI	CCNNNNNNNGG	2 cut(s)	104, 178
AgsI	TTSAA	1 cut(s)	209
AlwI	GGATC	5 cut(s)	57, 100, 191, 204, 217
AoxI	GGCC	2 cut(s)	109, 132
ApoI	RAATTY	1 cut(s)	202
AspS9I	GGNCC	1 cut(s)	132
AsuHPI	GGTGA	1 cut(s)	67
BalI	TGGCCA	1 cut(s)	111
BamHI	GGATCC	1 cut(s)	196
BbsI	GAAGAC	1 cut(s)	216
BccI	CCATC	1 cut(s)	157
BciVI	GTATCC	1 cut(s)	140
BfuI	GTATCC	1 cut(s)	140
BglI	GCCNNNNNGGC	1 cut(s)	117
BisI	GCNGC	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	198
BmsI	GCATC	2 cut(s)	177, 178
BpiI	GAAGAC	1 cut(s)	216
Bsa29I	ATCGAT	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	167
BsaJI	CCNNGG	2 cut(s)	112, 192
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 178
Bse118I	RCCGGY	1 cut(s)	134
Bse8I	GATNNNNATC	1 cut(s)	167
BseCI	ATCGAT	1 cut(s)	186
BseDI	CCNNGG	2 cut(s)	112, 192
BseGI	GGATG	1 cut(s)	168
BseJI	GATNNNNATC	1 cut(s)	167
BseLI	CCNNNNNNNGG	2 cut(s)	104, 178
BshFI	GGCC	2 cut(s)	111, 134
BshVI	ATCGAT	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	135
BslI	CCNNNNNNNGG	2 cut(s)	104, 178
BsnI	GGCC	2 cut(s)	111, 134
Bsp143I	GATC	6 cut(s)	49, 71, 92, 139, 196, 222
Bsp19I	CCATGG	1 cut(s)	112
BspACI	CCGC	2 cut(s)	12, 117
BspANI	GGCC	2 cut(s)	111, 134
BspDI	ATCGAT	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	198
BspPI	GGATC	5 cut(s)	57, 100, 191, 204, 217
BspQI	GCTCTTC	1 cut(s)	2
BsrBI	CCGCTC	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	134
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	112, 192
BssMI	GATC	6 cut(s)	49, 71, 92, 139, 196, 222
BssT1I	CCWWGG	2 cut(s)	112, 192
Bst6I	CTCTTC	2 cut(s)	2, 17
BstC8I	GCNNGC	1 cut(s)	136
BstDSI	CCRYGG	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	168
BstKTI	GATC	6 cut(s)	52, 74, 95, 142, 199, 225
BstMBI	GATC	6 cut(s)	49, 71, 92, 139, 196, 222
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	2 cut(s)	196, 222
BstYI	RGATCY	2 cut(s)	196, 222
Bsu15I	ATCGAT	1 cut(s)	186
BsuI	GTATCC	1 cut(s)	140
BsuRI	GGCC	2 cut(s)	111, 134
BsuTUI	ATCGAT	1 cut(s)	186
BtgI	CCRYGG	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	136
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	132
ClaI	ATCGAT	1 cut(s)	186
CseI	GACGC	1 cut(s)	220
CspCI	CAANNNNNGTGG	2 cut(s)	88, 123
CviAII	CATG	3 cut(s)	85, 113, 129
CviJI	RGCY	3 cut(s)	111, 134, 158
CviKI_1	RGCY	3 cut(s)	111, 134, 158
DpnI	GATC	6 cut(s)	51, 73, 94, 141, 198, 224
DpnII	GATC	6 cut(s)	49, 71, 92, 139, 196, 222
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	2 cut(s)	2, 17
EarI	CTCTTC	2 cut(s)	2, 17
Eco130I	CCWWGG	2 cut(s)	112, 192
EcoT14I	CCWWGG	2 cut(s)	112, 192
ErhI	CCWWGG	2 cut(s)	112, 192
FaeI	CATG	3 cut(s)	88, 116, 132
FaiI	YATR	3 cut(s)	86, 114, 130
FatI	CATG	3 cut(s)	84, 112, 128
Fnu4HI	GCNGC	1 cut(s)	118
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	118
GluI	GCNGC	1 cut(s)	118
HaeIII	GGCC	2 cut(s)	111, 134
HapII	CCGG	1 cut(s)	135
HgaI	GACGC	1 cut(s)	220
Hin1II	CATG	3 cut(s)	88, 116, 132
HinfI	GANTC	1 cut(s)	25
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	2 cut(s)	201, 236
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	1 cut(s)	126
HpyAV	CCTTC	2 cut(s)	55, 169
HpyCH4V	TGCA	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
Hsp92II	CATG	3 cut(s)	88, 116, 132
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
Kzo9I	GATC	6 cut(s)	49, 71, 92, 139, 196, 222
LguI	GCTCTTC	1 cut(s)	2
LpnPI	CCDG	6 cut(s)	38, 52, 60, 128, 148, 185
LweI	GCATC	2 cut(s)	177, 178
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	6 cut(s)	51, 73, 94, 141, 198, 224
MbiI	CCGCTC	1 cut(s)	12
MboI	GATC	6 cut(s)	49, 71, 92, 139, 196, 222
MboII	GAAGA	5 cut(s)	16, 19, 34, 70, 221
MflI	RGATCY	2 cut(s)	196, 222
MlsI	TGGCCA	1 cut(s)	111
MluCI	AATT	1 cut(s)	202
MluNI	TGGCCA	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	34
MnlI	CCTC	2 cut(s)	40, 172
Mox20I	TGGCCA	1 cut(s)	111
MroNI	GCCGGC	1 cut(s)	134
MscI	TGGCCA	1 cut(s)	111
Msp20I	TGGCCA	1 cut(s)	111
MspI	CCGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	117
NaeI	GCCGGC	1 cut(s)	136
NcoI	CCATGG	1 cut(s)	112
NdeII	GATC	6 cut(s)	49, 71, 92, 139, 196, 222
NgoMIV	GCCGGC	1 cut(s)	134
NlaIII	CATG	3 cut(s)	88, 116, 132
NlaIV	GGNNCC	1 cut(s)	198
NmeAIII	GCCGAG	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	26
PciSI	GCTCTTC	1 cut(s)	2
PdiI	GCCGGC	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	119
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	132
PsuI	RGATCY	2 cut(s)	196, 222
SapI	GCTCTTC	1 cut(s)	2
SatI	GCNGC	1 cut(s)	118
Sau3AI	GATC	6 cut(s)	49, 71, 92, 139, 196, 222
Sau96I	GGNCC	1 cut(s)	132
SchI	GAGTC	1 cut(s)	34
SetI	ASST	3 cut(s)	57, 109, 183
SfaNI	GCATC	2 cut(s)	177, 178
Sse9I	AATT	1 cut(s)	202
SsiI	CCGC	2 cut(s)	12, 117
StyI	CCWWGG	2 cut(s)	112, 192
TaqI	TCGA	1 cut(s)	186
TasI	AATT	1 cut(s)	202
TauI	GCSGC	1 cut(s)	120
TseFI	GTSAC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	26
TspDTI	ATGAA	2 cut(s)	17, 101
XapI	RAATTY	1 cut(s)	202
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.