Rh1DG169300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0005514
Physical Location & Seq
Forward (+)
34855005 .. 34855247
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG169300.1

Sequence Viewer

Length: 243 bp
ATGATGATGAAGAACAGTGGAAACGGGAAGAGTCACAAAGGAAATGTGAGAGAGGATCAGGTGAAGAAGGACAGGAAATCAAGATCGGGCATGAATGGATCGCCCAAGAAAGGTGGCCATGGCGGCAAGTTCACCTGGGCCGATGATCTGGGCTACTCTACAGCCGAGATGGGTTTTCAGAAGGAAGTCATCGACACCAAGGATCCAAACTTTGAAGACACAGTCGAGATCCCAAGCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.81

Weight (kDa)

8.96

Isoelectric Point (pI)

12.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 123
AclWI GGATC 5 cut(s) 63, 106, 197, 210, 223
AcoI YGGCCR 1 cut(s) 115
AfiI CCNNNNNNNGG 1 cut(s) 110
AgsI TTSAA 1 cut(s) 215
AjnI CCWGG 1 cut(s) 134
AlwI GGATC 5 cut(s) 63, 106, 197, 210, 223
AoxI GGCC 2 cut(s) 115, 138
AspS9I GGNCC 1 cut(s) 138
AsuHPI GGTGA 2 cut(s) 73, 124
BalI TGGCCA 1 cut(s) 117
BamHI GGATCC 1 cut(s) 202
BbsI GAAGAC 1 cut(s) 222
BccI CCATC 1 cut(s) 163
BciT130I CCWGG 1 cut(s) 136
BfmI CTRYAG 1 cut(s) 159
BglI GCCNNNNNGGC 1 cut(s) 123
BisI GCNGC 1 cut(s) 124
BlsI GCNGC 1 cut(s) 125
Bme1390I CCNGG 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 138
BmiI GGNNCC 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 136
BpiI GAAGAC 1 cut(s) 222
BsaJI CCNNGG 3 cut(s) 118, 135, 198
Bsc4I CCNNNNNNNGG 1 cut(s) 110
BseBI CCWGG 1 cut(s) 136
BseDI CCNNGG 3 cut(s) 118, 135, 198
BseLI CCNNNNNNNGG 1 cut(s) 110
BshFI GGCC 2 cut(s) 117, 140
BslI CCNNNNNNNGG 1 cut(s) 110
BsnI GGCC 2 cut(s) 117, 140
Bsp143I GATC 6 cut(s) 55, 83, 98, 145, 202, 228
Bsp19I CCATGG 1 cut(s) 118
BspACI CCGC 1 cut(s) 123
BspANI GGCC 2 cut(s) 117, 140
BspLI GGNNCC 1 cut(s) 204
BspPI GGATC 5 cut(s) 63, 106, 197, 210, 223
BssECI CCNNGG 3 cut(s) 118, 135, 198
BssMI GATC 6 cut(s) 55, 83, 98, 145, 202, 228
BssT1I CCWWGG 2 cut(s) 118, 198
Bst2UI CCWGG 1 cut(s) 136
Bst4CI ACNGT 2 cut(s) 17, 223
Bst6I CTCTTC 1 cut(s) 23
BstDSI CCRYGG 1 cut(s) 118
BstKTI GATC 6 cut(s) 58, 86, 101, 148, 205, 231
BstMBI GATC 6 cut(s) 55, 83, 98, 145, 202, 228
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstNI CCWGG 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 134
BstSFI CTRYAG 1 cut(s) 159
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 2 cut(s) 202, 228
BstYI RGATCY 2 cut(s) 202, 228
BsuRI GGCC 2 cut(s) 117, 140
BtgI CCRYGG 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 138
CseI GACGC 1 cut(s) 226
CspCI CAANNNNNGTGG 2 cut(s) 94, 129
CviAII CATG 2 cut(s) 91, 119
CviJI RGCY 4 cut(s) 117, 140, 153, 164
CviKI_1 RGCY 4 cut(s) 117, 140, 153, 164
DpnI GATC 6 cut(s) 57, 85, 100, 147, 204, 230
DpnII GATC 6 cut(s) 55, 83, 98, 145, 202, 228
EaeI YGGCCR 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Eco130I CCWWGG 2 cut(s) 118, 198
EcoRII CCWGG 1 cut(s) 134
EcoT14I CCWWGG 2 cut(s) 118, 198
ErhI CCWWGG 2 cut(s) 118, 198
FaeI CATG 2 cut(s) 94, 122
FaiI YATR 2 cut(s) 92, 120
FatI CATG 2 cut(s) 90, 118
Fnu4HI GCNGC 1 cut(s) 124
Fsp4HI GCNGC 1 cut(s) 124
GluI GCNGC 1 cut(s) 124
HaeIII GGCC 2 cut(s) 117, 140
HgaI GACGC 1 cut(s) 226
Hin1II CATG 2 cut(s) 94, 122
HinfI GANTC 1 cut(s) 31
HphI GGTGA 2 cut(s) 73, 124
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 2 cut(s) 180, 242
Hpy188III TCNNGA 2 cut(s) 81, 226
Hpy8I GTNNAC 1 cut(s) 132
HpyAV CCTTC 2 cut(s) 61, 175
HpyCH4III ACNGT 2 cut(s) 17, 223
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
Hsp92II CATG 2 cut(s) 94, 122
Kzo9I GATC 6 cut(s) 55, 83, 98, 145, 202, 228
LpnPI CCDG 5 cut(s) 44, 58, 121, 134, 148
MaeIII GTNAC 1 cut(s) 32
MalI GATC 6 cut(s) 57, 85, 100, 147, 204, 230
MboI GATC 6 cut(s) 55, 83, 98, 145, 202, 228
MboII GAAGA 4 cut(s) 22, 40, 76, 227
MflI RGATCY 2 cut(s) 202, 228
MlsI TGGCCA 1 cut(s) 117
MluNI TGGCCA 1 cut(s) 117
MlyI GAGTC 1 cut(s) 40
MnlI CCTC 1 cut(s) 46
Mox20I TGGCCA 1 cut(s) 117
MscI TGGCCA 1 cut(s) 117
Msp20I TGGCCA 1 cut(s) 117
MspR9I CCNGG 1 cut(s) 136
MvaI CCWGG 1 cut(s) 136
MwoI GCNNNNNNNGC 1 cut(s) 123
NcoI CCATGG 1 cut(s) 118
NdeII GATC 6 cut(s) 55, 83, 98, 145, 202, 228
NlaIII CATG 2 cut(s) 94, 122
NlaIV GGNNCC 1 cut(s) 204
NmeAIII GCCGAG 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 32
PflFI GACNNNGTC 1 cut(s) 221
PkrI GCNGC 1 cut(s) 125
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 134
PspN4I GGNNCC 1 cut(s) 204
PspPI GGNCC 1 cut(s) 138
PsuI RGATCY 2 cut(s) 202, 228
PsyI GACNNNGTC 1 cut(s) 221
SatI GCNGC 1 cut(s) 124
Sau3AI GATC 6 cut(s) 55, 83, 98, 145, 202, 228
Sau96I GGNCC 1 cut(s) 138
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 1 cut(s) 136
SetI ASST 3 cut(s) 63, 115, 137
SfcI CTRYAG 1 cut(s) 159
SsiI CCGC 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 134
StyI CCWWGG 2 cut(s) 118, 198
TaaI ACNGT 2 cut(s) 17, 223
TaqI TCGA 2 cut(s) 192, 225
TauI GCSGC 1 cut(s) 126
TscAI CASTG 1 cut(s) 22
TseFI GTSAC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 2 cut(s) 23, 107
TspRI CASTG 1 cut(s) 22
Tth111I GACNNNGTC 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.