Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005514

Physical Location & Seq

Genomic Coordinates Forward (+)

87014679 .. 87014981

Gene Structure 303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00149470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGAGCAACAACACTTGCGCACTGATCCCATAAGCAGTTCCAAGTTTCAGGTTACAGAGAAGAAGATGAAGAACAGTGGAAACGGGAAGAGTCACAAAGGGAATGCGAGAGAGGATCAGGTGAAGAAGGACAGGAAATCAGGGTCGGGCATGAATGGATCGCCCAAGAAAGGTGGCCATGGCGGCAAGTTCACCTGGGCCGGTGATCTGGGCTACTCTACAGCCGAGATGGGTTTTCAGAAGGAAGTCATCGACGCCAAGGATCCAAACTTTGAAGACACAGTCGAGATCCCAAGCGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

100

Amino Acids

10.9

Weight (kDa)

9.19

Isoelectric Point (pI)

21.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005514)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06390
prunus_persica	Prupe.7G218200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0092131
rosa_laevigata	RLG00000016276 RLG00000017332 RLG00000026233
rosa_multiflora	Rmu_sc0000218.1_g000035 Rmu_sc0002316.1_g000052 Rmu_sc0013552.1_g000003 Rmu_sc0039110.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149470
rosa_rugosa	Rorug02G0022900 Rorug02G0202800 Rorug02G0487900 Rorug04G0137700 Rorug04G0224400 Rorug05G0380400
rosa_samantha	Rh1DG169300 Rh2AG068700 Rh2AG499500 Rh2BG068000 Rh2DG281100 Rh3AG180300 Rh3BG206500 Rh3CG203600 Rh3CG221900
rosa_wichuraiana	Rw2G005270 Rw2G041000 Rw5G022820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	20
AciI	CCGC	1 cut(s)	183
AclWI	GGATC	6 cut(s)	20, 123, 166, 257, 270, 283
AcoI	YGGCCR	1 cut(s)	175
AcyI	GRCGYC	1 cut(s)	255
AfiI	CCNNNNNNNGG	1 cut(s)	170
AgsI	TTSAA	1 cut(s)	275
AjnI	CCWGG	1 cut(s)	194
AlwI	GGATC	6 cut(s)	20, 123, 166, 257, 270, 283
AoxI	GGCC	2 cut(s)	175, 198
AspLEI	GCGC	2 cut(s)	21, 299
AspS9I	GGNCC	1 cut(s)	198
AsuHPI	GGTGA	3 cut(s)	133, 184, 215
BalI	TGGCCA	1 cut(s)	177
BamHI	GGATCC	1 cut(s)	262
BbsI	GAAGAC	1 cut(s)	282
BccI	CCATC	1 cut(s)	223
BciT130I	CCWGG	1 cut(s)	196
BfmI	CTRYAG	1 cut(s)	219
BfoI	RGCGCY	1 cut(s)	300
BglI	GCCNNNNNGGC	1 cut(s)	183
BisI	GCNGC	1 cut(s)	184
BlsI	GCNGC	1 cut(s)	185
Bme1390I	CCNGG	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	198
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	282
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	3 cut(s)	178, 195, 258
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse118I	RCCGGY	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	196
BseDI	CCNNGG	3 cut(s)	178, 195, 258
BseLI	CCNNNNNNNGG	1 cut(s)	170
BshFI	GGCC	2 cut(s)	177, 200
BsiSI	CCGG	1 cut(s)	201
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	2 cut(s)	177, 200
Bsp143I	GATC	6 cut(s)	25, 115, 158, 205, 262, 288
Bsp19I	CCATGG	1 cut(s)	178
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	2 cut(s)	177, 200
BspLI	GGNNCC	1 cut(s)	264
BspPI	GGATC	6 cut(s)	20, 123, 166, 257, 270, 283
BsrFI	RCCGGY	1 cut(s)	200
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	3 cut(s)	178, 195, 258
BssMI	GATC	6 cut(s)	25, 115, 158, 205, 262, 288
BssNI	GRCGYC	1 cut(s)	255
BssT1I	CCWWGG	2 cut(s)	178, 258
Bst2UI	CCWGG	1 cut(s)	196
Bst4CI	ACNGT	2 cut(s)	77, 283
Bst6I	CTCTTC	1 cut(s)	83
BstACI	GRCGYC	1 cut(s)	255
BstDSI	CCRYGG	1 cut(s)	178
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	2 cut(s)	21, 299
BstKTI	GATC	6 cut(s)	28, 118, 161, 208, 265, 291
BstMBI	GATC	6 cut(s)	25, 115, 158, 205, 262, 288
BstMWI	GCNNNNNNNGC	1 cut(s)	183
BstNI	CCWGG	1 cut(s)	196
BstSCI	CCNGG	1 cut(s)	194
BstSFI	CTRYAG	1 cut(s)	219
BstV2I	GAAGAC	1 cut(s)	282
BstX2I	RGATCY	2 cut(s)	262, 288
BstYI	RGATCY	2 cut(s)	262, 288
BsuRI	GGCC	2 cut(s)	177, 200
BtgI	CCRYGG	1 cut(s)	178
BtsIMutI	CAGTG	2 cut(s)	21, 82
CfoI	GCGC	2 cut(s)	21, 299
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	198
CseI	GACGC	1 cut(s)	263
CspCI	CAANNNNNGTGG	2 cut(s)	154, 189
CviAII	CATG	2 cut(s)	151, 179
CviJI	RGCY	4 cut(s)	177, 200, 213, 224
CviKI_1	RGCY	4 cut(s)	177, 200, 213, 224
DpnI	GATC	6 cut(s)	27, 117, 160, 207, 264, 290
DpnII	GATC	6 cut(s)	25, 115, 158, 205, 262, 288
EaeI	YGGCCR	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
Eco130I	CCWWGG	2 cut(s)	178, 258
EcoRII	CCWGG	1 cut(s)	194
EcoT14I	CCWWGG	2 cut(s)	178, 258
ErhI	CCWWGG	2 cut(s)	178, 258
FaeI	CATG	2 cut(s)	154, 182
FaiI	YATR	3 cut(s)	32, 152, 180
FatI	CATG	2 cut(s)	150, 178
Fnu4HI	GCNGC	1 cut(s)	184
Fsp4HI	GCNGC	1 cut(s)	184
FspI	TGCGCA	1 cut(s)	20
GlaI	GCGC	2 cut(s)	20, 298
GluI	GCNGC	1 cut(s)	184
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	2 cut(s)	177, 200
HapII	CCGG	1 cut(s)	201
HgaI	GACGC	1 cut(s)	263
HhaI	GCGC	2 cut(s)	21, 299
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	2 cut(s)	154, 182
Hin6I	GCGC	2 cut(s)	19, 297
HinP1I	GCGC	2 cut(s)	19, 297
HinfI	GANTC	1 cut(s)	91
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	3 cut(s)	133, 184, 215
Hpy166II	GTNNAC	1 cut(s)	192
Hpy188I	TCNGA	1 cut(s)	240
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	1 cut(s)	192
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	2 cut(s)	121, 235
HpyCH4III	ACNGT	2 cut(s)	77, 283
HpyF10VI	GCNNNNNNNGC	1 cut(s)	183
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	2 cut(s)	154, 182
HspAI	GCGC	2 cut(s)	19, 297
Kzo9I	GATC	6 cut(s)	25, 115, 158, 205, 262, 288
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	8 cut(s)	35, 104, 118, 126, 181, 194, 208, 214
MaeIII	GTNAC	2 cut(s)	52, 92
MalI	GATC	6 cut(s)	27, 117, 160, 207, 264, 290
MboI	GATC	6 cut(s)	25, 115, 158, 205, 262, 288
MboII	GAAGA	6 cut(s)	73, 76, 82, 100, 136, 287
MflI	RGATCY	2 cut(s)	262, 288
MlsI	TGGCCA	1 cut(s)	177
MluNI	TGGCCA	1 cut(s)	177
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	1 cut(s)	106
Mox20I	TGGCCA	1 cut(s)	177
MscI	TGGCCA	1 cut(s)	177
Msp20I	TGGCCA	1 cut(s)	177
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	196
Mva1269I	GAATGC	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	196
MwoI	GCNNNNNNNGC	1 cut(s)	183
NcoI	CCATGG	1 cut(s)	178
NdeII	GATC	6 cut(s)	25, 115, 158, 205, 262, 288
NlaIII	CATG	2 cut(s)	154, 182
NlaIV	GGNNCC	1 cut(s)	264
NmeAIII	GCCGAG	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	92
NsbI	TGCGCA	1 cut(s)	20
PctI	GAATGC	1 cut(s)	109
PflFI	GACNNNGTC	1 cut(s)	281
PkrI	GCNGC	1 cut(s)	185
PleI	GAGTC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	194
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	198
PsuI	RGATCY	2 cut(s)	262, 288
PsyI	GACNNNGTC	1 cut(s)	281
SatI	GCNGC	1 cut(s)	184
Sau3AI	GATC	6 cut(s)	25, 115, 158, 205, 262, 288
Sau96I	GGNCC	1 cut(s)	198
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	1 cut(s)	196
SetI	ASST	4 cut(s)	54, 123, 175, 197
SfcI	CTRYAG	1 cut(s)	219
SsiI	CCGC	1 cut(s)	183
StyD4I	CCNGG	1 cut(s)	194
StyI	CCWWGG	2 cut(s)	178, 258
TaaI	ACNGT	2 cut(s)	77, 283
TaqI	TCGA	2 cut(s)	252, 285
TauI	GCSGC	1 cut(s)	186
TscAI	CASTG	2 cut(s)	28, 82
TseFI	GTSAC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	2 cut(s)	83, 167
TspRI	CASTG	2 cut(s)	28, 82
Tth111I	GACNNNGTC	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.