Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005514

Physical Location & Seq

Genomic Coordinates Reverse (-)

51630312 .. 51635043

Gene Structure 4732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0380400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTCGGTTTCCGTGAATTCATCGGACCAGGTCTGTGAGAATGGAACTGTTAAGCTACTTCCTGCTACGAATGATGACCATGGAGGTGTTATTGTGGACATGAAGGATGCTATGGAGCCTCAGGCATTTCGTACTTTGCTTAGAACTTCAATAGTTCAATGGAGGCTACAGGGAAAGAAGGGAGTTTGGATAAAATTACCCATCGAACTTGTAAATCTTGTTGAAACGGTAGTTAAGGAAGGATTTCACTACCACCATGCTGAGCCACATTACCTCATGCTTGTTTATTGGATTCCTGAAACCACTAATACTATACCTGCAAATGCTTCACACCGAGTTGGCGTTGGTGCTATTATTTTGAATGATAAAAACGAGATGCTTGTAGTCCAGGAAAAGAGTGGCAGGTTACAAGGAACAGGTGTGTGGAAAATCCCTACCGGTATAGTTGATGAGGGTGAGGATATTACTGTGGCAGCTGTAAGGGAAGTTAAAGAAGAAACAGGAATTGATGCAGAGTTTTCAGAGGTATTAGCATTCAGGCAAGCACACAAGTTATTTTTTGAGAAGTCGGATCTGTTTTTTGTGTGCATGATGCGTCCTCTATCCTTTGACATCCAAAAGCAAGACCTAGAGATTGAGGCAGCTAAGTGGATTTCACTCGAGGAATTCGCAGCTCAACCAGTCACCCAAAAACATGGGCTCTTCAAGTGCATCCATGAGCTTTGCTTGGCAAAAGTAAAGGGGAACTATGCTGGATTTTCTCCACTGTCTATAGAATCATTTTTTGACGATAGGTTGAGTTATTTTTATTTAAATAGGCAGGAGATTCAGTGCCTAACTTCTTCGGTTCAGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

285

Amino Acids

32.18

Weight (kDa)

5.41

Isoelectric Point (pI)

37.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	20 - 98	3.4e-29	Nudix hydrolase domain
NUDIX	PF00293	111 - 231	1.6e-23	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005514)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06390
prunus_persica	Prupe.7G218200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0092131
rosa_laevigata	RLG00000016276 RLG00000017332 RLG00000026233
rosa_multiflora	Rmu_sc0000218.1_g000035 Rmu_sc0002316.1_g000052 Rmu_sc0013552.1_g000003 Rmu_sc0039110.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149470
rosa_rugosa	Rorug02G0022900 Rorug02G0202800 Rorug02G0487900 Rorug04G0137700 Rorug04G0224400 Rorug05G0380400
rosa_samantha	Rh1DG169300 Rh2AG068700 Rh2AG499500 Rh2BG068000 Rh2DG281100 Rh3AG180300 Rh3BG206500 Rh3CG203600 Rh3CG221900
rosa_wichuraiana	Rw2G005270 Rw2G041000 Rw5G022820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	325, 393
AclWI	GGATC	1 cut(s)	579
AcsI	RAATTY	2 cut(s)	16, 665
AfaI	GTAC	1 cut(s)	133
AgeI	ACCGGT	1 cut(s)	437
AgsI	TTSAA	5 cut(s)	150, 158, 224, 361, 706
AjnI	CCWGG	2 cut(s)	27, 387
AluBI	AGCT	5 cut(s)	55, 476, 644, 674, 721
AluI	AGCT	5 cut(s)	55, 476, 644, 674, 721
AlwI	GGATC	1 cut(s)	579
Ama87I	CYCGRG	1 cut(s)	659
ApeKI	GCWGC	3 cut(s)	473, 641, 671
ApoI	RAATTY	2 cut(s)	16, 665
AsiGI	ACCGGT	1 cut(s)	437
Asp700I	GAANNNNTTC	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	25
AsuHPI	GGTGA	2 cut(s)	467, 676
AvaI	CYCGRG	1 cut(s)	659
AvaII	GGWCC	1 cut(s)	25
AxyI	CCTNAGG	1 cut(s)	120
BanII	GRGCYC	1 cut(s)	702
BbvI	GCAGC	3 cut(s)	485, 653, 683
BccI	CCATC	1 cut(s)	209
BciT130I	CCWGG	2 cut(s)	29, 389
BfaI	CTAG	2 cut(s)	629, 856
BfmI	CTRYAG	2 cut(s)	167, 771
BfuAI	ACCTGC	2 cut(s)	325, 393
BisI	GCNGC	3 cut(s)	474, 642, 672
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	3 cut(s)	475, 643, 673
Bme1390I	CCNGG	2 cut(s)	29, 389
Bme18I	GGWCC	1 cut(s)	25
BmeT110I	CYCGRG	1 cut(s)	659
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	117
BmrFI	CCNGG	2 cut(s)	29, 389
BmsI	GCATC	5 cut(s)	97, 366, 499, 582, 720
Bpu1102I	GCTNAGC	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	79
BsaWI	WCCGGW	1 cut(s)	437
BsaXI	ACNNNNNCTCC	2 cut(s)	815, 845
Bse118I	RCCGGY	1 cut(s)	437
Bse1I	ACTGG	1 cut(s)	680
Bse21I	CCTNAGG	1 cut(s)	120
BseBI	CCWGG	2 cut(s)	29, 389
BseDI	CCNNGG	1 cut(s)	79
BseGI	GGATG	3 cut(s)	112, 612, 711
BseMII	CTCAG	2 cut(s)	134, 252
BseNI	ACTGG	1 cut(s)	680
BseXI	GCAGC	3 cut(s)	485, 653, 683
BshTI	ACCGGT	1 cut(s)	437
BsiHKCI	CYCGRG	1 cut(s)	659
BsiSI	CCGG	1 cut(s)	438
BsmI	GAATGC	1 cut(s)	533
BsoBI	CYCGRG	1 cut(s)	659
Bsp1286I	GDGCHC	1 cut(s)	702
Bsp143I	GATC	1 cut(s)	571
Bsp1720I	GCTNAGC	1 cut(s)	261
Bsp19I	CCATGG	1 cut(s)	79
BspCNI	CTCAG	2 cut(s)	133, 253
BspLI	GGNNCC	1 cut(s)	117
BspMI	ACCTGC	2 cut(s)	325, 393
BspPI	GGATC	1 cut(s)	579
BspQI	GCTCTTC	1 cut(s)	707
BsrFI	RCCGGY	1 cut(s)	437
BsrI	ACTGG	1 cut(s)	680
BssAI	RCCGGY	1 cut(s)	437
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	1 cut(s)	571
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	2 cut(s)	29, 389
Bst4CI	ACNGT	4 cut(s)	49, 229, 469, 768
Bst6I	CTCTTC	1 cut(s)	707
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	4 cut(s)	120, 140, 261, 645
BstDSI	CCRYGG	1 cut(s)	79
BstF5I	GGATG	3 cut(s)	112, 612, 711
BstKTI	GATC	1 cut(s)	574
BstMBI	GATC	1 cut(s)	571
BstNI	CCWGG	2 cut(s)	29, 389
BstSCI	CCNGG	2 cut(s)	27, 387
BstSFI	CTRYAG	2 cut(s)	167, 771
BstV1I	GCAGC	3 cut(s)	485, 653, 683
BstX2I	RGATCY	1 cut(s)	571
BstXI	CCANNNNNNTGG	1 cut(s)	695
BstYI	RGATCY	1 cut(s)	571
Bsu36I	CCTNAGG	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	79
BtsCI	GGATG	3 cut(s)	112, 612, 711
BtsIMutI	CAGTG	2 cut(s)	764, 836
BveI	ACCTGC	2 cut(s)	325, 393
Cac8I	GCNNGC	1 cut(s)	543
Cfr10I	RCCGGY	1 cut(s)	437
Cfr13I	GGNCC	1 cut(s)	25
CseI	GACGC	1 cut(s)	584
CsiI	ACCWGGT	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	132
CspAI	ACCGGT	1 cut(s)	437
CviAII	CATG	7 cut(s)	80, 100, 257, 277, 589, 695, 716
CviJI	RGCY	9 cut(s)	55, 118, 166, 265, 476, 644, 674, 700, 721
CviKI_1	RGCY	9 cut(s)	55, 118, 166, 265, 476, 644, 674, 700, 721
CviQI	GTAC	1 cut(s)	132
DdeI	CTNAG	4 cut(s)	120, 140, 261, 645
DpnI	GATC	1 cut(s)	573
DpnII	GATC	1 cut(s)	571
DraI	TTTAAA	1 cut(s)	813
Eam1104I	CTCTTC	1 cut(s)	707
EarI	CTCTTC	1 cut(s)	707
Eco130I	CCWWGG	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	702
Eco47I	GGWCC	1 cut(s)	25
Eco81I	CCTNAGG	1 cut(s)	120
Eco88I	CYCGRG	1 cut(s)	659
EcoRI	GAATTC	2 cut(s)	16, 665
EcoRII	CCWGG	2 cut(s)	27, 387
EcoT14I	CCWWGG	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	702
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	7 cut(s)	83, 103, 260, 280, 592, 698, 719
FatI	CATG	7 cut(s)	79, 99, 256, 276, 588, 694, 715
Fnu4HI	GCNGC	3 cut(s)	474, 642, 672
FokI	GGATG	3 cut(s)	119, 599, 698
FriOI	GRGCYC	1 cut(s)	702
Fsp4HI	GCNGC	3 cut(s)	474, 642, 672
FspBI	CTAG	2 cut(s)	629, 856
GluI	GCNGC	3 cut(s)	474, 642, 672
HapII	CCGG	1 cut(s)	438
HgaI	GACGC	1 cut(s)	584
Hin1II	CATG	7 cut(s)	83, 103, 260, 280, 592, 698, 719
HinfI	GANTC	3 cut(s)	292, 776, 826
HpaII	CCGG	1 cut(s)	438
HphI	GGTGA	2 cut(s)	467, 676
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	3 cut(s)	25, 523, 571
Hpy188III	TCNNGA	1 cut(s)	296
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	3 cut(s)	97, 172, 233
HpyCH4III	ACNGT	4 cut(s)	49, 229, 469, 768
HpyCH4V	TGCA	4 cut(s)	320, 512, 588, 711
HpyF3I	CTNAG	4 cut(s)	120, 140, 261, 645
Hsp92II	CATG	7 cut(s)	83, 103, 260, 280, 592, 698, 719
Kzo9I	GATC	1 cut(s)	571
LguI	GCTCTTC	1 cut(s)	707
LmnI	GCTCC	1 cut(s)	115
Lsp1109I	GCAGC	3 cut(s)	485, 653, 683
LweI	GCATC	5 cut(s)	97, 366, 499, 582, 720
MabI	ACCWGGT	1 cut(s)	27
MaeI	CTAG	2 cut(s)	629, 856
MaeIII	GTNAC	2 cut(s)	405, 682
MalI	GATC	1 cut(s)	573
MboI	GATC	1 cut(s)	571
MboII	GAAGA	3 cut(s)	506, 694, 834
MflI	RGATCY	1 cut(s)	571
MhlI	GDGCHC	1 cut(s)	702
MluCI	AATT	4 cut(s)	16, 194, 504, 665
MmeI	TCCRAC	1 cut(s)	549
MroXI	GAANNNNTTC	1 cut(s)	243
MseI	TTAA	4 cut(s)	51, 234, 489, 812
MslI	CAYNNNNRTG	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	476
MspI	CCGG	1 cut(s)	438
MspR9I	CCNGG	2 cut(s)	29, 389
Mva1269I	GAATGC	1 cut(s)	533
MvaI	CCWGG	2 cut(s)	29, 389
NcoI	CCATGG	1 cut(s)	79
NdeII	GATC	1 cut(s)	571
NlaIII	CATG	7 cut(s)	83, 103, 260, 280, 592, 698, 719
NlaIV	GGNNCC	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	682
PaeR7I	CTCGAG	1 cut(s)	659
PciSI	GCTCTTC	1 cut(s)	707
PctI	GAATGC	1 cut(s)	533
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	3 cut(s)	292, 776, 826
PflFI	GACNNNGTC	1 cut(s)	29
PfoI	TCCNGGA	1 cut(s)	387
PinAI	ACCGGT	1 cut(s)	437
PkrI	GCNGC	3 cut(s)	475, 643, 673
Psp6I	CCWGG	2 cut(s)	27, 387
PspGI	CCWGG	2 cut(s)	27, 387
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	25
PspXI	VCTCGAGB	1 cut(s)	659
PsuI	RGATCY	1 cut(s)	571
PsyI	GACNNNGTC	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	476
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
RseI	CAYNNNNRTG	1 cut(s)	84
SapI	GCTCTTC	1 cut(s)	707
SaqAI	TTAA	4 cut(s)	51, 234, 489, 812
SatI	GCNGC	3 cut(s)	474, 642, 672
Sau3AI	GATC	1 cut(s)	571
Sau96I	GGNCC	1 cut(s)	25
ScrFI	CCNGG	2 cut(s)	29, 389
SduI	GDGCHC	1 cut(s)	702
SexAI	ACCWGGT	1 cut(s)	27
SfaNI	GCATC	5 cut(s)	97, 366, 499, 582, 720
SfcI	CTRYAG	2 cut(s)	167, 771
Sfr274I	CTCGAG	1 cut(s)	659
SinI	GGWCC	1 cut(s)	25
SlaI	CTCGAG	1 cut(s)	659
SmiI	ATTTAAAT	1 cut(s)	813
SmiMI	CAYNNNNRTG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	659
SmoI	CTYRAG	1 cut(s)	659
Sse9I	AATT	4 cut(s)	16, 194, 504, 665
SspMI	CTAG	2 cut(s)	629, 856
StyD4I	CCNGG	2 cut(s)	27, 387
StyI	CCWWGG	1 cut(s)	79
SwaI	ATTTAAAT	1 cut(s)	813
TaaI	ACNGT	4 cut(s)	49, 229, 469, 768
TaqI	TCGA	2 cut(s)	204, 660
TasI	AATT	4 cut(s)	16, 194, 504, 665
TfiI	GAWTC	3 cut(s)	292, 776, 826
Tru1I	TTAA	4 cut(s)	51, 234, 489, 812
Tru9I	TTAA	4 cut(s)	51, 234, 489, 812
TscAI	CASTG	2 cut(s)	771, 836
TseFI	GTSAC	1 cut(s)	682
TseI	GCWGC	3 cut(s)	473, 641, 671
Tsp45I	GTSAC	1 cut(s)	682
TspDTI	ATGAA	2 cut(s)	9, 116
TspRI	CASTG	2 cut(s)	771, 836
Tth111I	GACNNNGTC	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	25
XapI	RAATTY	2 cut(s)	16, 665
XcmI	CCANNNNNNNNNTGG	1 cut(s)	395
XhoI	CTCGAG	1 cut(s)	659
XmnI	GAANNNNTTC	1 cut(s)	243
XspI	CTAG	2 cut(s)	629, 856

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.