Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005514

Physical Location & Seq

Genomic Coordinates Forward (+)

15417976 .. 15418681

Gene Structure 706 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017332

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGTTCAGATTGATAGTGCAAAGATGACCTCAACACCGGGAAGTCTCCAGTTTATCAGCAGGAATTATCTTGATCTGTTATTGTTCCAAGATTCAGTAACAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGAAGAACAGTGGAAACGGGAAGAGTCACAAAGGAAACGCGAGAGAGGATCAGGTGAAGAAGGACAGGAAATCAAGATCGGGCATGAATGGGTCTCCCAAGGAAGGTGGCCATGGCGGCAAGTTCACCTCGGCCGATGATCTGGGCTACTATACAGCCGAGATCGGTTTTCAGAAGGAAGTCATCGACGCCAAGGATCCAAACTTTGAAGACACAGTCGAGATCCCAAGCGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

13.53

Weight (kDa)

9.55

Isoelectric Point (pI)

33.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005514)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06390
prunus_persica	Prupe.7G218200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0092131
rosa_laevigata	RLG00000016276 RLG00000017332 RLG00000026233
rosa_multiflora	Rmu_sc0000218.1_g000035 Rmu_sc0002316.1_g000052 Rmu_sc0013552.1_g000003 Rmu_sc0039110.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149470
rosa_rugosa	Rorug02G0022900 Rorug02G0202800 Rorug02G0487900 Rorug04G0137700 Rorug04G0224400 Rorug05G0380400
rosa_samantha	Rh1DG169300 Rh2AG068700 Rh2AG499500 Rh2BG068000 Rh2DG281100 Rh3AG180300 Rh3BG206500 Rh3CG203600 Rh3CG221900
rosa_wichuraiana	Rw2G005270 Rw2G041000 Rw5G022820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	173
AciI	CCGC	1 cut(s)	249
AclWI	GGATC	4 cut(s)	189, 323, 336, 349
AcoI	YGGCCR	2 cut(s)	241, 264
AcyI	GRCGYC	1 cut(s)	321
AfiI	CCNNNNNNNGG	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	341
Alw26I	GTCTC	2 cut(s)	50, 231
AlwI	GGATC	4 cut(s)	189, 323, 336, 349
AoxI	GGCC	2 cut(s)	241, 264
AsuC2I	CCSGG	1 cut(s)	39
AsuHPI	GGTGA	2 cut(s)	199, 250
BalI	TGGCCA	1 cut(s)	243
BamHI	GGATCC	1 cut(s)	328
BbsI	GAAGAC	1 cut(s)	348
BcnI	CCSGG	1 cut(s)	39
BcoDI	GTCTC	2 cut(s)	50, 231
BglI	GCCNNNNNGGC	1 cut(s)	249
BisI	GCNGC	1 cut(s)	250
BlsI	GCNGC	1 cut(s)	251
Bme1390I	CCNGG	1 cut(s)	39
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	1 cut(s)	39
BpiI	GAAGAC	1 cut(s)	348
BpmI	CTGGAG	1 cut(s)	32
BpuMI	CCSGG	1 cut(s)	39
BsaHI	GRCGYC	1 cut(s)	321
BsaI	GGTCTC	1 cut(s)	231
BsaJI	CCNNGG	4 cut(s)	231, 244, 261, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	49
BseDI	CCNNGG	4 cut(s)	231, 244, 261, 324
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseNI	ACTGG	1 cut(s)	49
BseX3I	CGGCCG	1 cut(s)	264
Bsh1236I	CGCG	1 cut(s)	173
Bsh1285I	CGRYCG	1 cut(s)	267
BshFI	GGCC	2 cut(s)	243, 266
BsiEI	CGRYCG	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	38
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmAI	GTCTC	2 cut(s)	50, 231
BsnI	GGCC	2 cut(s)	243, 266
Bso31I	GGTCTC	1 cut(s)	231
Bsp143I	GATC	7 cut(s)	73, 181, 209, 271, 294, 328, 354
Bsp19I	CCATGG	1 cut(s)	244
BspACI	CCGC	1 cut(s)	249
BspANI	GGCC	2 cut(s)	243, 266
BspFNI	CGCG	1 cut(s)	173
BspLI	GGNNCC	1 cut(s)	330
BspPI	GGATC	4 cut(s)	189, 323, 336, 349
BspTNI	GGTCTC	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	49
BssECI	CCNNGG	4 cut(s)	231, 244, 261, 324
BssMI	GATC	7 cut(s)	73, 181, 209, 271, 294, 328, 354
BssNI	GRCGYC	1 cut(s)	321
BssT1I	CCWWGG	3 cut(s)	231, 244, 324
Bst4CI	ACNGT	2 cut(s)	143, 349
Bst6I	CTCTTC	1 cut(s)	149
BstACI	GRCGYC	1 cut(s)	321
BstDSI	CCRYGG	1 cut(s)	244
BstFNI	CGCG	1 cut(s)	173
BstKTI	GATC	7 cut(s)	76, 184, 212, 274, 297, 331, 357
BstMAI	GTCTC	2 cut(s)	50, 231
BstMBI	GATC	7 cut(s)	73, 181, 209, 271, 294, 328, 354
BstMCI	CGRYCG	1 cut(s)	267
BstMWI	GCNNNNNNNGC	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	37
BstUI	CGCG	1 cut(s)	173
BstV2I	GAAGAC	1 cut(s)	348
BstX2I	RGATCY	2 cut(s)	328, 354
BstYI	RGATCY	2 cut(s)	328, 354
BstZI	CGGCCG	1 cut(s)	264
BsuRI	GGCC	2 cut(s)	243, 266
BtgI	CCRYGG	1 cut(s)	244
BtsIMutI	CAGTG	1 cut(s)	148
CseI	GACGC	2 cut(s)	329, 352
CspCI	CAANNNNNGTGG	2 cut(s)	220, 255
CviAII	CATG	2 cut(s)	217, 245
CviJI	RGCY	4 cut(s)	243, 266, 279, 290
CviKI_1	RGCY	4 cut(s)	243, 266, 279, 290
DpnI	GATC	7 cut(s)	75, 183, 211, 273, 296, 330, 356
DpnII	GATC	7 cut(s)	73, 181, 209, 271, 294, 328, 354
EaeI	YGGCCR	2 cut(s)	241, 264
EagI	CGGCCG	1 cut(s)	264
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
EclXI	CGGCCG	1 cut(s)	264
Eco130I	CCWWGG	3 cut(s)	231, 244, 324
Eco31I	GGTCTC	1 cut(s)	231
Eco52I	CGGCCG	1 cut(s)	264
EcoT14I	CCWWGG	3 cut(s)	231, 244, 324
ErhI	CCWWGG	3 cut(s)	231, 244, 324
FaeI	CATG	2 cut(s)	220, 248
FaiI	YATR	3 cut(s)	218, 246, 285
FatI	CATG	2 cut(s)	216, 244
Fnu4HI	GCNGC	1 cut(s)	250
Fsp4HI	GCNGC	1 cut(s)	250
GluI	GCNGC	1 cut(s)	250
GsuI	CTGGAG	1 cut(s)	32
HaeIII	GGCC	2 cut(s)	243, 266
HapII	CCGG	1 cut(s)	38
HgaI	GACGC	2 cut(s)	329, 352
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	2 cut(s)	220, 248
HinfI	GANTC	2 cut(s)	92, 157
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	2 cut(s)	199, 250
Hpy166II	GTNNAC	1 cut(s)	258
Hpy188I	TCNGA	2 cut(s)	9, 306
Hpy188III	TCNNGA	3 cut(s)	71, 207, 352
Hpy8I	GTNNAC	1 cut(s)	258
Hpy99I	CGWCG	1 cut(s)	323
HpyAV	CCTTC	3 cut(s)	187, 230, 301
HpyCH4III	ACNGT	2 cut(s)	143, 349
HpyCH4V	TGCA	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	1 cut(s)	249
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	2 cut(s)	220, 248
Kzo9I	GATC	7 cut(s)	73, 181, 209, 271, 294, 328, 354
LpnPI	CCDG	6 cut(s)	46, 51, 62, 170, 184, 260
MaeIII	GTNAC	2 cut(s)	97, 158
MalI	GATC	7 cut(s)	75, 183, 211, 273, 296, 330, 356
MboI	GATC	7 cut(s)	73, 181, 209, 271, 294, 328, 354
MflI	RGATCY	2 cut(s)	328, 354
MlsI	TGGCCA	1 cut(s)	243
MluCI	AATT	1 cut(s)	64
MluNI	TGGCCA	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	166
MnlI	CCTC	3 cut(s)	40, 172, 271
Mox20I	TGGCCA	1 cut(s)	243
MscI	TGGCCA	1 cut(s)	243
Msp20I	TGGCCA	1 cut(s)	243
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	39
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	249
NciI	CCSGG	1 cut(s)	39
NcoI	CCATGG	1 cut(s)	244
NdeII	GATC	7 cut(s)	73, 181, 209, 271, 294, 328, 354
NlaIII	CATG	2 cut(s)	220, 248
NlaIV	GGNNCC	1 cut(s)	330
NmeAIII	GCCGAG	2 cut(s)	242, 316
NmuCI	GTSAC	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	92
PflFI	GACNNNGTC	1 cut(s)	347
PkrI	GCNGC	1 cut(s)	251
PleI	GAGTC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	330
PsuI	RGATCY	2 cut(s)	328, 354
PsyI	GACNNNGTC	1 cut(s)	347
SatI	GCNGC	1 cut(s)	250
Sau3AI	GATC	7 cut(s)	73, 181, 209, 271, 294, 328, 354
SchI	GAGTC	1 cut(s)	166
ScrFI	CCNGG	1 cut(s)	39
SetI	ASST	4 cut(s)	32, 189, 241, 263
Sse9I	AATT	1 cut(s)	64
SsiI	CCGC	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	37
StyI	CCWWGG	3 cut(s)	231, 244, 324
TaaI	ACNGT	2 cut(s)	143, 349
TaqI	TCGA	2 cut(s)	318, 351
TasI	AATT	1 cut(s)	64
TauI	GCSGC	1 cut(s)	252
TfiI	GAWTC	1 cut(s)	92
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	1 cut(s)	158
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	2 cut(s)	149, 233
TspRI	CASTG	1 cut(s)	148
Tth111I	GACNNNGTC	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.