Rmu_sc0000218.1_g000035

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000218.1
OG0005514
Physical Location & Seq
Reverse (-)
133039 .. 133575
537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000218.1_g000035.1.cds

Sequence Viewer

Length: 294 bp
atgtctgggaaacaccaccggagttgtgatggttcaatccaagattttacagagaagaagaagaacagtggaaacgggaagagtcacaaaggaaatgtgagagaggatcaggtgaagaaggacaggaaatcaggatcaggcatgaatggatcgcccaaaaaaggtgtccatggcggcaagttcacctgggccaatgatctgggctactctacagccaagatgggttttcagaaggaagtcattgacgccaaggatccaaactttgaagacacagtcgagatcccaagcgtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.6

Weight (kDa)

9.41

Isoelectric Point (pI)

27.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 174
AclWI GGATC 6 cut(s) 114, 142, 157, 248, 261, 274
AcyI GRCGYC 1 cut(s) 246
AfiI CCNNNNNNNGG 1 cut(s) 161
AgsI TTSAA 2 cut(s) 36, 266
AjnI CCWGG 1 cut(s) 185
AlwI GGATC 6 cut(s) 114, 142, 157, 248, 261, 274
AoxI GGCC 1 cut(s) 189
ArsI GACNNNNNNTTYG 2 cut(s) 150, 182
AspS9I GGNCC 1 cut(s) 189
AsuHPI GGTGA 2 cut(s) 124, 175
BamHI GGATCC 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 273
BccI CCATC 2 cut(s) 23, 214
BciT130I CCWGG 1 cut(s) 187
BfmI CTRYAG 1 cut(s) 210
BisI GCNGC 1 cut(s) 175
BlsI GCNGC 1 cut(s) 176
Bme1390I CCNGG 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 189
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 1 cut(s) 187
BpiI GAAGAC 1 cut(s) 273
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 3 cut(s) 169, 186, 249
BsaWI WCCGGW 1 cut(s) 18
Bsc4I CCNNNNNNNGG 1 cut(s) 161
BseBI CCWGG 1 cut(s) 187
BseDI CCNNGG 3 cut(s) 169, 186, 249
BseLI CCNNNNNNNGG 1 cut(s) 161
BshFI GGCC 1 cut(s) 191
BsiSI CCGG 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 161
BsnI GGCC 1 cut(s) 191
Bsp143I GATC 6 cut(s) 106, 134, 149, 196, 253, 279
Bsp19I CCATGG 1 cut(s) 169
BspACI CCGC 1 cut(s) 174
BspANI GGCC 1 cut(s) 191
BspLI GGNNCC 1 cut(s) 255
BspPI GGATC 6 cut(s) 114, 142, 157, 248, 261, 274
BssECI CCNNGG 3 cut(s) 169, 186, 249
BssMI GATC 6 cut(s) 106, 134, 149, 196, 253, 279
BssNI GRCGYC 1 cut(s) 246
BssT1I CCWWGG 2 cut(s) 169, 249
Bst2UI CCWGG 1 cut(s) 187
Bst4CI ACNGT 2 cut(s) 68, 274
Bst6I CTCTTC 1 cut(s) 74
BstACI GRCGYC 1 cut(s) 246
BstDSI CCRYGG 1 cut(s) 169
BstKTI GATC 6 cut(s) 109, 137, 152, 199, 256, 282
BstMBI GATC 6 cut(s) 106, 134, 149, 196, 253, 279
BstNI CCWGG 1 cut(s) 187
BstSCI CCNGG 1 cut(s) 185
BstSFI CTRYAG 1 cut(s) 210
BstV2I GAAGAC 1 cut(s) 273
BstX2I RGATCY 2 cut(s) 253, 279
BstXI CCANNNNNNTGG 1 cut(s) 199
BstYI RGATCY 2 cut(s) 253, 279
BsuRI GGCC 1 cut(s) 191
BtgI CCRYGG 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 189
CseI GACGC 2 cut(s) 254, 277
CspCI CAANNNNNGTGG 2 cut(s) 5, 40
CviAII CATG 2 cut(s) 142, 170
CviJI RGCY 3 cut(s) 191, 204, 215
CviKI_1 RGCY 3 cut(s) 191, 204, 215
DpnI GATC 6 cut(s) 108, 136, 151, 198, 255, 281
DpnII GATC 6 cut(s) 106, 134, 149, 196, 253, 279
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
Eco130I CCWWGG 2 cut(s) 169, 249
EcoRII CCWGG 1 cut(s) 185
EcoT14I CCWWGG 2 cut(s) 169, 249
ErhI CCWWGG 2 cut(s) 169, 249
FaeI CATG 2 cut(s) 145, 173
FaiI YATR 2 cut(s) 143, 171
FatI CATG 2 cut(s) 141, 169
Fnu4HI GCNGC 1 cut(s) 175
Fsp4HI GCNGC 1 cut(s) 175
GluI GCNGC 1 cut(s) 175
HaeIII GGCC 1 cut(s) 191
HapII CCGG 1 cut(s) 19
HgaI GACGC 2 cut(s) 254, 277
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 2 cut(s) 145, 173
HinfI GANTC 1 cut(s) 82
HpaII CCGG 1 cut(s) 19
HphI GGTGA 2 cut(s) 124, 175
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 2 cut(s) 231, 293
Hpy188III TCNNGA 2 cut(s) 132, 277
Hpy8I GTNNAC 1 cut(s) 183
HpyAV CCTTC 2 cut(s) 112, 226
HpyCH4III ACNGT 2 cut(s) 68, 274
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 2 cut(s) 145, 173
Kzo9I GATC 6 cut(s) 106, 134, 149, 196, 253, 279
LpnPI CCDG 8 cut(s) 32, 95, 109, 117, 123, 172, 185, 199
MaeIII GTNAC 1 cut(s) 83
MalI GATC 6 cut(s) 108, 136, 151, 198, 255, 281
MboI GATC 6 cut(s) 106, 134, 149, 196, 253, 279
MboII GAAGA 6 cut(s) 67, 70, 73, 91, 127, 278
MflI RGATCY 2 cut(s) 253, 279
MlyI GAGTC 1 cut(s) 91
MnlI CCTC 1 cut(s) 97
MspI CCGG 1 cut(s) 19
MspR9I CCNGG 1 cut(s) 187
MvaI CCWGG 1 cut(s) 187
NcoI CCATGG 1 cut(s) 169
NdeII GATC 6 cut(s) 106, 134, 149, 196, 253, 279
NlaIII CATG 2 cut(s) 145, 173
NlaIV GGNNCC 1 cut(s) 255
NmuCI GTSAC 1 cut(s) 83
PflFI GACNNNGTC 1 cut(s) 272
PkrI GCNGC 1 cut(s) 176
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 255
PspPI GGNCC 1 cut(s) 189
PsuI RGATCY 2 cut(s) 253, 279
PsyI GACNNNGTC 1 cut(s) 272
SatI GCNGC 1 cut(s) 175
Sau3AI GATC 6 cut(s) 106, 134, 149, 196, 253, 279
Sau96I GGNCC 1 cut(s) 189
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 187
SetI ASST 3 cut(s) 114, 166, 188
SfcI CTRYAG 1 cut(s) 210
SsiI CCGC 1 cut(s) 174
StyD4I CCNGG 1 cut(s) 185
StyI CCWWGG 2 cut(s) 169, 249
TaaI ACNGT 2 cut(s) 68, 274
TaqI TCGA 1 cut(s) 276
TauI GCSGC 1 cut(s) 177
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 1 cut(s) 158
TspRI CASTG 1 cut(s) 73
Tth111I GACNNNGTC 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.