Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005514

Physical Location & Seq

Genomic Coordinates Reverse (-)

5287519 .. 5290504

Gene Structure 2986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016276

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAAGAACAGTGGAAACGGGAAGAGTCACAAAGGGAATGCGAAAGAGGATCAGGTGAAGAAGGACAGGAAATCAGGGTCGGGCATGAATGGATCGCCCAAGAAAGGTGGCCATGGCGGCAAGTTCACCTGGGCCGGTGATCTGGGCTACTCTACAGCCGAGATGGGTTTTCAGAAGGAAGTCATCGACGCCAAGGATCCAAACTTTGAAGACACAAGTGCACTGAAACCTTGTGGCAGCAATGGGTACAGCGGCTCCGGTTGCGCTGAAACCTTTGATGGTTCTATCCCTACTCCTCTCTACTCCTATTTCCCTCTACCAAATCACTTATGCTTTTTGGAGTGGAAGTTTCAAATTGGAACCTTTGATGGTTGGCTTCTCTTGCGGCCATCATGGGAGATGTCAGGCGGCGGCGGCTCAGTTTCTTGGCCAAAGTTTAGCATGGATTGTGGTTTGCAATTGCGTCAGGGTGCCTTCGTTCAGGGTGTTCAAATCAGTGTGGCGGGCTACAATTCGAGCCTATCTCTTGGTGCTTGCGAAGGATATGATAGCGGCAAGGCTACCTGTGATTGGATCGGCCTAGGTCGAATGGAATGTTTGGCCGGCCGGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

21.77

Weight (kDa)

7.54

Isoelectric Point (pI)

27.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005514)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06390
prunus_persica	Prupe.7G218200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0092131
rosa_laevigata	RLG00000016276 RLG00000017332 RLG00000026233
rosa_multiflora	Rmu_sc0000218.1_g000035 Rmu_sc0002316.1_g000052 Rmu_sc0013552.1_g000003 Rmu_sc0039110.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149470
rosa_rugosa	Rorug02G0022900 Rorug02G0202800 Rorug02G0487900 Rorug04G0137700 Rorug04G0224400 Rorug05G0380400
rosa_samantha	Rh1DG169300 Rh2AG068700 Rh2AG499500 Rh2BG068000 Rh2DG281100 Rh3AG180300 Rh3BG206500 Rh3CG203600 Rh3CG221900
rosa_wichuraiana	Rw2G005270 Rw2G041000 Rw5G022820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	470
AciI	CCGC	8 cut(s)	117, 252, 385, 408, 411, 414, 503, 552
AclWI	GGATC	5 cut(s)	57, 100, 191, 204, 581
AcoI	YGGCCR	5 cut(s)	109, 386, 428, 600, 604
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	2 cut(s)	104, 570
AgsI	TTSAA	3 cut(s)	209, 353, 491
AjnI	CCWGG	1 cut(s)	128
Alw21I	GWGCWC	1 cut(s)	223
Alw44I	GTGCAC	1 cut(s)	219
AlwI	GGATC	5 cut(s)	57, 100, 191, 204, 581
AoxI	GGCC	7 cut(s)	109, 132, 386, 428, 577, 600, 604
ApaLI	GTGCAC	1 cut(s)	219
ApeKI	GCWGC	1 cut(s)	237
AspA2I	CCTAGG	1 cut(s)	580
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	1 cut(s)	132
AsuHPI	GGTGA	3 cut(s)	67, 118, 149
AvrII	CCTAGG	1 cut(s)	580
BaeGI	GKGCMC	1 cut(s)	223
BalI	TGGCCA	2 cut(s)	111, 430
BamHI	GGATCC	1 cut(s)	196
BanI	GGYRCC	1 cut(s)	470
BbsI	GAAGAC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	249
BccI	CCATC	4 cut(s)	157, 272, 362, 397
BciT130I	CCWGG	1 cut(s)	130
BfaI	CTAG	1 cut(s)	581
BfmI	CTRYAG	1 cut(s)	153
BglI	GCCNNNNNGGC	1 cut(s)	117
BisI	GCNGC	8 cut(s)	118, 238, 253, 386, 409, 412, 415, 553
BlnI	CCTAGG	1 cut(s)	580
BlsI	GCNGC	8 cut(s)	119, 239, 254, 387, 410, 413, 416, 554
Bme1390I	CCNGG	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	4 cut(s)	198, 256, 361, 472
BmrFI	CCNGG	1 cut(s)	130
BpiI	GAAGAC	1 cut(s)	216
BplI	GAGNNNNNCTC	2 cut(s)	508, 540
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	4 cut(s)	112, 129, 192, 580
BsaWI	WCCGGW	1 cut(s)	257
BsaXI	ACNNNNNCTCC	4 cut(s)	239, 269, 332, 362
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 570
Bse118I	RCCGGY	2 cut(s)	134, 602
Bse3DI	GCAATG	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	4 cut(s)	112, 129, 192, 580
BseLI	CCNNNNNNNGG	2 cut(s)	104, 570
BseMI	GCAATG	1 cut(s)	247
BseMII	CTCAG	1 cut(s)	432
BseRI	GAGGAG	1 cut(s)	285
BseSI	GKGCMC	1 cut(s)	223
BseX3I	CGGCCG	1 cut(s)	604
BseXI	GCAGC	1 cut(s)	249
Bsh1285I	CGRYCG	1 cut(s)	607
BshFI	GGCC	7 cut(s)	111, 134, 388, 430, 579, 602, 606
BshNI	GGYRCC	1 cut(s)	470
BsiEI	CGRYCG	1 cut(s)	607
BsiHKAI	GWGCWC	1 cut(s)	223
BsiSI	CCGG	4 cut(s)	135, 258, 603, 607
BslI	CCNNNNNNNGG	2 cut(s)	104, 570
BsmI	GAATGC	1 cut(s)	43
BsnI	GGCC	7 cut(s)	111, 134, 388, 430, 579, 602, 606
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	6 cut(s)	49, 92, 139, 196, 573, 609
Bsp19I	CCATGG	1 cut(s)	112
BspACI	CCGC	8 cut(s)	117, 252, 385, 408, 411, 414, 503, 552
BspANI	GGCC	7 cut(s)	111, 134, 388, 430, 579, 602, 606
BspCNI	CTCAG	1 cut(s)	431
BspLI	GGNNCC	4 cut(s)	198, 256, 361, 472
BspPI	GGATC	5 cut(s)	57, 100, 191, 204, 581
BspT107I	GGYRCC	1 cut(s)	470
BsrDI	GCAATG	1 cut(s)	247
BsrFI	RCCGGY	2 cut(s)	134, 602
BssAI	RCCGGY	2 cut(s)	134, 602
BssECI	CCNNGG	4 cut(s)	112, 129, 192, 580
BssMI	GATC	6 cut(s)	49, 92, 139, 196, 573, 609
BssNI	GRCGYC	1 cut(s)	189
BssT1I	CCWWGG	3 cut(s)	112, 192, 580
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	11
Bst6I	CTCTTC	1 cut(s)	17
BstACI	GRCGYC	1 cut(s)	189
BstC8I	GCNNGC	3 cut(s)	505, 535, 604
BstDEI	CTNAG	1 cut(s)	418
BstDSI	CCRYGG	1 cut(s)	112
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	6 cut(s)	52, 95, 142, 199, 576, 612
BstMBI	GATC	6 cut(s)	49, 92, 139, 196, 573, 609
BstMCI	CGRYCG	1 cut(s)	607
BstMWI	GCNNNNNNNGC	4 cut(s)	117, 261, 382, 414
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	128
BstSFI	CTRYAG	1 cut(s)	153
BstSLI	GKGCMC	1 cut(s)	223
BstV1I	GCAGC	1 cut(s)	249
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	2 cut(s)	196, 609
BstYI	RGATCY	2 cut(s)	196, 609
BstZI	CGGCCG	1 cut(s)	604
BsuRI	GGCC	7 cut(s)	111, 134, 388, 430, 579, 602, 606
BtgI	CCRYGG	1 cut(s)	112
BtsIMutI	CAGTG	3 cut(s)	16, 221, 502
Cac8I	GCNNGC	3 cut(s)	505, 535, 604
CfoI	GCGC	1 cut(s)	266
Cfr10I	RCCGGY	2 cut(s)	134, 602
Cfr13I	GGNCC	1 cut(s)	132
CseI	GACGC	2 cut(s)	197, 452
Csp6I	GTAC	1 cut(s)	247
CspCI	CAANNNNNGTGG	2 cut(s)	88, 123
CviAII	CATG	4 cut(s)	85, 113, 393, 442
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	1 cut(s)	418
DpnI	GATC	6 cut(s)	51, 94, 141, 198, 575, 611
DpnII	GATC	6 cut(s)	49, 92, 139, 196, 573, 609
EaeI	YGGCCR	5 cut(s)	109, 386, 428, 600, 604
EagI	CGGCCG	1 cut(s)	604
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
EclXI	CGGCCG	1 cut(s)	604
Eco130I	CCWWGG	3 cut(s)	112, 192, 580
Eco52I	CGGCCG	1 cut(s)	604
EcoRII	CCWGG	1 cut(s)	128
EcoT14I	CCWWGG	3 cut(s)	112, 192, 580
ErhI	CCWWGG	3 cut(s)	112, 192, 580
FaeI	CATG	4 cut(s)	88, 116, 396, 445
FaiI	YATR	6 cut(s)	86, 114, 331, 394, 443, 546
FatI	CATG	4 cut(s)	84, 112, 392, 441
FauI	CCCGC	1 cut(s)	496
Fnu4HI	GCNGC	8 cut(s)	118, 238, 253, 386, 409, 412, 415, 553
FseI	GGCCGGCC	1 cut(s)	606
Fsp4HI	GCNGC	8 cut(s)	118, 238, 253, 386, 409, 412, 415, 553
FspBI	CTAG	1 cut(s)	581
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	8 cut(s)	118, 238, 253, 386, 409, 412, 415, 553
HaeIII	GGCC	7 cut(s)	111, 134, 388, 430, 579, 602, 606
HapII	CCGG	4 cut(s)	135, 258, 603, 607
HgaI	GACGC	2 cut(s)	197, 452
HhaI	GCGC	1 cut(s)	266
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	4 cut(s)	88, 116, 396, 445
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HinfI	GANTC	1 cut(s)	25
HpaII	CCGG	4 cut(s)	135, 258, 603, 607
HphI	GGTGA	3 cut(s)	67, 118, 149
Hpy166II	GTNNAC	2 cut(s)	126, 221
Hpy188I	TCNGA	1 cut(s)	174
Hpy8I	GTNNAC	2 cut(s)	126, 221
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	4 cut(s)	55, 169, 484, 533
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4V	TGCA	2 cut(s)	221, 457
HpyF10VI	GCNNNNNNNGC	4 cut(s)	117, 261, 382, 414
HpyF3I	CTNAG	1 cut(s)	418
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	4 cut(s)	88, 116, 396, 445
HspAI	GCGC	1 cut(s)	264
KroI	GCCGGC	1 cut(s)	602
KroNI	GCCGGC	1 cut(s)	604
Kzo9I	GATC	6 cut(s)	49, 92, 139, 196, 573, 609
LmnI	GCTCC	1 cut(s)	260
Lsp1109I	GCAGC	1 cut(s)	249
MaeI	CTAG	1 cut(s)	581
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	6 cut(s)	51, 94, 141, 198, 575, 611
MboI	GATC	6 cut(s)	49, 92, 139, 196, 573, 609
MboII	GAAGA	4 cut(s)	16, 34, 70, 221
MfeI	CAATTG	1 cut(s)	458
MflI	RGATCY	2 cut(s)	196, 609
MhlI	GDGCHC	1 cut(s)	223
MlsI	TGGCCA	2 cut(s)	111, 430
MluCI	AATT	3 cut(s)	354, 458, 511
MluNI	TGGCCA	2 cut(s)	111, 430
MlyI	GAGTC	1 cut(s)	34
MnlI	CCTC	3 cut(s)	40, 306, 324
Mox20I	TGGCCA	2 cut(s)	111, 430
MroNI	GCCGGC	1 cut(s)	602
MscI	TGGCCA	2 cut(s)	111, 430
Msp20I	TGGCCA	2 cut(s)	111, 430
MspA1I	CMGCKG	1 cut(s)	252
MspI	CCGG	4 cut(s)	135, 258, 603, 607
MspR9I	CCNGG	1 cut(s)	130
MunI	CAATTG	1 cut(s)	458
Mva1269I	GAATGC	1 cut(s)	43
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	4 cut(s)	117, 261, 382, 414
NaeI	GCCGGC	1 cut(s)	604
NcoI	CCATGG	1 cut(s)	112
NdeII	GATC	6 cut(s)	49, 92, 139, 196, 573, 609
NgoMIV	GCCGGC	1 cut(s)	602
NlaIII	CATG	4 cut(s)	88, 116, 396, 445
NlaIV	GGNNCC	4 cut(s)	198, 256, 361, 472
NmeAIII	GCCGAG	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	26
PctI	GAATGC	1 cut(s)	43
PdiI	GCCGGC	1 cut(s)	604
PkrI	GCNGC	8 cut(s)	119, 239, 254, 387, 410, 413, 416, 554
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	4 cut(s)	198, 256, 361, 472
PspPI	GGNCC	1 cut(s)	132
PsuI	RGATCY	2 cut(s)	196, 609
RigI	GGCCGGCC	1 cut(s)	606
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SatI	GCNGC	8 cut(s)	118, 238, 253, 386, 409, 412, 415, 553
Sau3AI	GATC	6 cut(s)	49, 92, 139, 196, 573, 609
Sau96I	GGNCC	1 cut(s)	132
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	8 cut(s)	57, 109, 131, 232, 275, 365, 566, 586
SfcI	CTRYAG	1 cut(s)	153
Sse9I	AATT	3 cut(s)	354, 458, 511
SsiI	CCGC	8 cut(s)	117, 252, 385, 408, 411, 414, 503, 552
SspMI	CTAG	1 cut(s)	581
StyD4I	CCNGG	1 cut(s)	128
StyI	CCWWGG	3 cut(s)	112, 192, 580
TaaI	ACNGT	1 cut(s)	11
TaqI	TCGA	3 cut(s)	186, 515, 586
TasI	AATT	3 cut(s)	354, 458, 511
TauI	GCSGC	7 cut(s)	120, 255, 388, 411, 414, 417, 555
TscAI	CASTG	3 cut(s)	16, 228, 502
TseFI	GTSAC	1 cut(s)	26
TseI	GCWGC	1 cut(s)	237
Tsp45I	GTSAC	1 cut(s)	26
TspDTI	ATGAA	2 cut(s)	17, 101
TspRI	CASTG	3 cut(s)	16, 228, 502
VneI	GTGCAC	1 cut(s)	219
XmaJI	CCTAGG	1 cut(s)	580
XspI	CTAG	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.