Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005514

Physical Location & Seq

Genomic Coordinates Forward (+)

1436887 .. 1437207

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026233

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGTGATAGGGAAGTCTCCAGTTATCAGCAGGAATTATCTTGATCTGTTATGGTTCCAAGATTCAGTTACAGAGAAGAAGAAGATGAAGAACAGTGGAAACGGGAAGAGTCACAAAGGAAATGTGAGAGAGGATCAGGTGAAGAAGGACAGGAAATCAGGAGCCGGCATGAATAGATCGCCCAAGAAAGGGGGCCATGGCAGCAAGTTCACCTGGGCCGATGATCTGGGCTACTCTACAGCTGAGATGGGTTTTCAGAAGGAAGTCATCGACGCCAAGGATCTAAACTTTGAAGACACAGTCGAGATCTCAAGCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

107

Amino Acids

11.81

Weight (kDa)

9.33

Isoelectric Point (pI)

30.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005514)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06390
prunus_persica	Prupe.7G218200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0092131
rosa_laevigata	RLG00000016276 RLG00000017332 RLG00000026233
rosa_multiflora	Rmu_sc0000218.1_g000035 Rmu_sc0002316.1_g000052 Rmu_sc0013552.1_g000003 Rmu_sc0039110.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149470
rosa_rugosa	Rorug02G0022900 Rorug02G0202800 Rorug02G0487900 Rorug04G0137700 Rorug04G0224400 Rorug05G0380400
rosa_samantha	Rh1DG169300 Rh2AG068700 Rh2AG499500 Rh2BG068000 Rh2DG281100 Rh3AG180300 Rh3BG206500 Rh3CG203600 Rh3CG221900
rosa_wichuraiana	Rw2G005270 Rw2G041000 Rw5G022820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	141, 288
AcyI	GRCGYC	1 cut(s)	273
AfiI	CCNNNNNNNGG	2 cut(s)	188, 189
AgsI	TTSAA	1 cut(s)	293
AjnI	CCWGG	1 cut(s)	212
AluBI	AGCT	1 cut(s)	242
AluI	AGCT	1 cut(s)	242
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	2 cut(s)	141, 288
AoxI	GGCC	2 cut(s)	193, 216
ApeKI	GCWGC	1 cut(s)	201
AspS9I	GGNCC	2 cut(s)	193, 216
AsuHPI	GGTGA	3 cut(s)	16, 151, 202
BbsI	GAAGAC	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	213
BccI	CCATC	1 cut(s)	241
BciT130I	CCWGG	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	237
BglII	AGATCT	1 cut(s)	306
BisI	GCNGC	1 cut(s)	202
BlsI	GCNGC	1 cut(s)	203
Bme1390I	CCNGG	1 cut(s)	214
BmgT120I	GGNCC	2 cut(s)	193, 216
BmiI	GGNNCC	3 cut(s)	56, 163, 194
BmrFI	CCNGG	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	300
BpuEI	CTTGAG	1 cut(s)	295
BsaHI	GRCGYC	1 cut(s)	273
BsaJI	CCNNGG	3 cut(s)	196, 213, 276
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 189
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	3 cut(s)	196, 213, 276
BseLI	CCNNNNNNNGG	2 cut(s)	188, 189
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	213
BshFI	GGCC	2 cut(s)	195, 218
BsiSI	CCGG	1 cut(s)	165
BslI	CCNNNNNNNGG	2 cut(s)	188, 189
BsmAI	GTCTC	1 cut(s)	21
BsnI	GGCC	2 cut(s)	195, 218
Bsp143I	GATC	6 cut(s)	43, 133, 176, 223, 280, 306
Bsp19I	CCATGG	1 cut(s)	196
BspANI	GGCC	2 cut(s)	195, 218
BspCNI	CTCAG	1 cut(s)	235
BspLI	GGNNCC	3 cut(s)	56, 163, 194
BspPI	GGATC	2 cut(s)	141, 288
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	3 cut(s)	196, 213, 276
BssMI	GATC	6 cut(s)	43, 133, 176, 223, 280, 306
BssNI	GRCGYC	1 cut(s)	273
BssT1I	CCWWGG	2 cut(s)	196, 276
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	2 cut(s)	95, 301
Bst6I	CTCTTC	1 cut(s)	101
BstACI	GRCGYC	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	1 cut(s)	243
BstDSI	CCRYGG	1 cut(s)	196
BstKTI	GATC	6 cut(s)	46, 136, 179, 226, 283, 309
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	6 cut(s)	43, 133, 176, 223, 280, 306
BstMWI	GCNNNNNNNGC	1 cut(s)	201
BstNI	CCWGG	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	212
BstSFI	CTRYAG	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	213
BstV2I	GAAGAC	1 cut(s)	300
BstX2I	RGATCY	2 cut(s)	280, 306
BstYI	RGATCY	2 cut(s)	280, 306
BsuRI	GGCC	2 cut(s)	195, 218
BtgI	CCRYGG	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	166
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	193, 216
CseI	GACGC	2 cut(s)	281, 304
CviAII	CATG	2 cut(s)	169, 197
CviJI	RGCY	5 cut(s)	164, 195, 218, 231, 242
CviKI_1	RGCY	5 cut(s)	164, 195, 218, 231, 242
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	6 cut(s)	45, 135, 178, 225, 282, 308
DpnII	GATC	6 cut(s)	43, 133, 176, 223, 280, 306
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Eco130I	CCWWGG	2 cut(s)	196, 276
EcoRII	CCWGG	1 cut(s)	212
EcoT14I	CCWWGG	2 cut(s)	196, 276
ErhI	CCWWGG	2 cut(s)	196, 276
FaeI	CATG	2 cut(s)	172, 200
FaiI	YATR	3 cut(s)	52, 170, 198
FatI	CATG	2 cut(s)	168, 196
Fnu4HI	GCNGC	1 cut(s)	202
Fsp4HI	GCNGC	1 cut(s)	202
GluI	GCNGC	1 cut(s)	202
HaeIII	GGCC	2 cut(s)	195, 218
HapII	CCGG	1 cut(s)	165
HgaI	GACGC	2 cut(s)	281, 304
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	2 cut(s)	172, 200
HinfI	GANTC	2 cut(s)	62, 109
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	3 cut(s)	16, 151, 202
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	2 cut(s)	258, 320
Hpy188III	TCNNGA	3 cut(s)	41, 159, 304
Hpy8I	GTNNAC	1 cut(s)	210
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	2 cut(s)	139, 253
HpyCH4III	ACNGT	2 cut(s)	95, 301
HpyF10VI	GCNNNNNNNGC	1 cut(s)	201
HpyF3I	CTNAG	1 cut(s)	243
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	2 cut(s)	172, 200
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
Kzo9I	GATC	6 cut(s)	43, 133, 176, 223, 280, 306
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	9 cut(s)	16, 33, 122, 136, 144, 178, 199, 212, 226
Lsp1109I	GCAGC	1 cut(s)	213
MaeIII	GTNAC	2 cut(s)	67, 110
MalI	GATC	6 cut(s)	45, 135, 178, 225, 282, 308
MboI	GATC	6 cut(s)	43, 133, 176, 223, 280, 306
MboII	GAAGA	7 cut(s)	88, 91, 94, 100, 118, 154, 305
MflI	RGATCY	2 cut(s)	280, 306
MluCI	AATT	1 cut(s)	34
MlyI	GAGTC	1 cut(s)	118
MnlI	CCTC	1 cut(s)	124
MroNI	GCCGGC	1 cut(s)	164
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	214
MwoI	GCNNNNNNNGC	1 cut(s)	201
NaeI	GCCGGC	1 cut(s)	166
NcoI	CCATGG	1 cut(s)	196
NdeII	GATC	6 cut(s)	43, 133, 176, 223, 280, 306
NgoMIV	GCCGGC	1 cut(s)	164
NlaIII	CATG	2 cut(s)	172, 200
NlaIV	GGNNCC	3 cut(s)	56, 163, 194
NmuCI	GTSAC	1 cut(s)	110
PdiI	GCCGGC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	62
PflFI	GACNNNGTC	1 cut(s)	299
PkrI	GCNGC	1 cut(s)	203
PleI	GAGTC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PspN4I	GGNNCC	3 cut(s)	56, 163, 194
PspPI	GGNCC	2 cut(s)	193, 216
PsuI	RGATCY	2 cut(s)	280, 306
PsyI	GACNNNGTC	1 cut(s)	299
PvuII	CAGCTG	1 cut(s)	242
SatI	GCNGC	1 cut(s)	202
Sau3AI	GATC	6 cut(s)	43, 133, 176, 223, 280, 306
Sau96I	GGNCC	2 cut(s)	193, 216
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	1 cut(s)	214
SetI	ASST	3 cut(s)	141, 215, 244
SfcI	CTRYAG	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
Sse9I	AATT	1 cut(s)	34
StyD4I	CCNGG	1 cut(s)	212
StyI	CCWWGG	2 cut(s)	196, 276
TaaI	ACNGT	2 cut(s)	95, 301
TaqI	TCGA	2 cut(s)	270, 303
TasI	AATT	1 cut(s)	34
TfiI	GAWTC	1 cut(s)	62
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	1 cut(s)	201
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	2 cut(s)	101, 185
TspRI	CASTG	1 cut(s)	100
Tth111I	GACNNNGTC	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.