Rh3CG221900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0005514
Physical Location & Seq
Forward (+)
20725953 .. 20726273
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG221900.1

Sequence Viewer

Length: 321 bp
ATGGTGATAGGGAAGTCTCTAGTTATCAGCAGGAATTATCTTGATCTGTTATGGTTCCAAGATTCAGTTACAGAGAAGAAGATGAAGAACAGTGGAAACGGGAAGAGTCACAAAGGAAATGTGAGTGAGGATCAGGTGAAGAAGGATAGGAAATCAAGATCGAGCATGAATGGATCACCCAAGAAAGGTGGCCATGGCAGCAAGTTCACTTGGGTCGATGATCTGGGCTACTCTACAGCCAAGATGGGTTTTCAGAAGGAAGCCATCAACGCCAAGGATCCAAACTTTGAAGACACAGTCGAGATCCCAAGCGTCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.78

Weight (kDa)

9.49

Isoelectric Point (pI)

32.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 5 cut(s) 138, 181, 272, 285, 298
AcoI YGGCCR 1 cut(s) 190
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 1 cut(s) 290
Alw26I GTCTC 1 cut(s) 21
AlwI GGATC 5 cut(s) 138, 181, 272, 285, 298
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 1 cut(s) 198
AsuHPI GGTGA 3 cut(s) 16, 148, 168
BalI TGGCCA 1 cut(s) 192
BamHI GGATCC 1 cut(s) 277
BbsI GAAGAC 1 cut(s) 297
BbvI GCAGC 1 cut(s) 210
BccI CCATC 2 cut(s) 238, 272
BcoDI GTCTC 1 cut(s) 21
BfaI CTAG 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 234
BisI GCNGC 1 cut(s) 199
BlsI GCNGC 1 cut(s) 200
BmiI GGNNCC 2 cut(s) 56, 279
BpiI GAAGAC 1 cut(s) 297
BsaJI CCNNGG 2 cut(s) 193, 273
Bsc4I CCNNNNNNNGG 1 cut(s) 185
BseDI CCNNGG 2 cut(s) 193, 273
BseLI CCNNNNNNNGG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 210
BshFI GGCC 1 cut(s) 192
BslI CCNNNNNNNGG 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 21
BsnI GGCC 1 cut(s) 192
Bsp143I GATC 7 cut(s) 43, 130, 158, 173, 220, 277, 303
Bsp19I CCATGG 1 cut(s) 193
BspANI GGCC 1 cut(s) 192
BspLI GGNNCC 2 cut(s) 56, 279
BspPI GGATC 5 cut(s) 138, 181, 272, 285, 298
BssECI CCNNGG 2 cut(s) 193, 273
BssMI GATC 7 cut(s) 43, 130, 158, 173, 220, 277, 303
BssT1I CCWWGG 2 cut(s) 193, 273
Bst4CI ACNGT 2 cut(s) 92, 298
Bst6I CTCTTC 1 cut(s) 98
BstDSI CCRYGG 1 cut(s) 193
BstKTI GATC 7 cut(s) 46, 133, 161, 176, 223, 280, 306
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 7 cut(s) 43, 130, 158, 173, 220, 277, 303
BstMWI GCNNNNNNNGC 2 cut(s) 198, 269
BstSFI CTRYAG 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 210
BstV2I GAAGAC 1 cut(s) 297
BstX2I RGATCY 2 cut(s) 277, 303
BstYI RGATCY 2 cut(s) 277, 303
BsuRI GGCC 1 cut(s) 192
BtgI CCRYGG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 97
CseI GACGC 1 cut(s) 301
CspCI CAANNNNNGTGG 2 cut(s) 169, 204
CviAII CATG 2 cut(s) 166, 194
CviJI RGCY 4 cut(s) 192, 228, 239, 263
CviKI_1 RGCY 4 cut(s) 192, 228, 239, 263
DpnI GATC 7 cut(s) 45, 132, 160, 175, 222, 279, 305
DpnII GATC 7 cut(s) 43, 130, 158, 173, 220, 277, 303
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Eco130I CCWWGG 2 cut(s) 193, 273
EcoT14I CCWWGG 2 cut(s) 193, 273
ErhI CCWWGG 2 cut(s) 193, 273
FaeI CATG 2 cut(s) 169, 197
FaiI YATR 4 cut(s) 52, 167, 195, 319
FatI CATG 2 cut(s) 165, 193
Fnu4HI GCNGC 1 cut(s) 199
Fsp4HI GCNGC 1 cut(s) 199
FspBI CTAG 1 cut(s) 20
GluI GCNGC 1 cut(s) 199
HaeIII GGCC 1 cut(s) 192
HgaI GACGC 1 cut(s) 301
Hin1II CATG 2 cut(s) 169, 197
HinfI GANTC 2 cut(s) 62, 106
HphI GGTGA 3 cut(s) 16, 148, 168
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 1 cut(s) 255
Hpy188III TCNNGA 3 cut(s) 41, 156, 301
Hpy8I GTNNAC 1 cut(s) 207
HpyAV CCTTC 2 cut(s) 136, 250
HpyCH4III ACNGT 2 cut(s) 92, 298
HpyF10VI GCNNNNNNNGC 2 cut(s) 198, 269
Hsp92II CATG 2 cut(s) 169, 197
Kzo9I GATC 7 cut(s) 43, 130, 158, 173, 220, 277, 303
LpnPI CCDG 3 cut(s) 16, 119, 209
Lsp1109I GCAGC 1 cut(s) 210
MaeI CTAG 1 cut(s) 20
MaeIII GTNAC 2 cut(s) 67, 107
MalI GATC 7 cut(s) 45, 132, 160, 175, 222, 279, 305
MboI GATC 7 cut(s) 43, 130, 158, 173, 220, 277, 303
MboII GAAGA 6 cut(s) 88, 91, 97, 115, 151, 302
MflI RGATCY 2 cut(s) 277, 303
MlsI TGGCCA 1 cut(s) 192
MluCI AATT 1 cut(s) 34
MluNI TGGCCA 1 cut(s) 192
MlyI GAGTC 1 cut(s) 115
MnlI CCTC 1 cut(s) 121
Mox20I TGGCCA 1 cut(s) 192
MscI TGGCCA 1 cut(s) 192
Msp20I TGGCCA 1 cut(s) 192
MwoI GCNNNNNNNGC 2 cut(s) 198, 269
NcoI CCATGG 1 cut(s) 193
NdeII GATC 7 cut(s) 43, 130, 158, 173, 220, 277, 303
NlaIII CATG 2 cut(s) 169, 197
NlaIV GGNNCC 2 cut(s) 56, 279
NmuCI GTSAC 1 cut(s) 107
PfeI GAWTC 1 cut(s) 62
PflFI GACNNNGTC 1 cut(s) 296
PkrI GCNGC 1 cut(s) 200
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
PspN4I GGNNCC 2 cut(s) 56, 279
PsuI RGATCY 2 cut(s) 277, 303
PsyI GACNNNGTC 1 cut(s) 296
SatI GCNGC 1 cut(s) 199
Sau3AI GATC 7 cut(s) 43, 130, 158, 173, 220, 277, 303
SchI GAGTC 1 cut(s) 115
SetI ASST 2 cut(s) 138, 190
SfcI CTRYAG 1 cut(s) 234
Sse9I AATT 1 cut(s) 34
SspMI CTAG 1 cut(s) 20
StyI CCWWGG 2 cut(s) 193, 273
TaaI ACNGT 2 cut(s) 92, 298
TaqI TCGA 3 cut(s) 161, 216, 300
TasI AATT 1 cut(s) 34
TfiI GAWTC 1 cut(s) 62
TscAI CASTG 1 cut(s) 97
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 1 cut(s) 198
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 2 cut(s) 98, 182
TspRI CASTG 1 cut(s) 97
Tth111I GACNNNGTC 1 cut(s) 296
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.