Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005514

Physical Location & Seq

Genomic Coordinates Reverse (-)

31861612 .. 31863085

Gene Structure 1474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG281100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTGATAAGGAAGTCTCCAGTTATCAGCAGGAATTATCTTGATCTATTATGGTTCCAAGATTCAGTTAGAAAGAAGAAGAAGAAGAAGAAGAACAGTGGAAATGGGAAGAGTCACAAAGGAAATGTGAGAGAGGATCAGGTGAAGAAGGACAGGAAATCAGGATCGGGCATGAATGGATCGCCCAATAAGAAAGGTGGCCATGGCGGCAAGTTCACCCGGGCTACTCTACAGCCAAGATGGGTTTTCAGAAGGAAGTCATCGACGCCAAGGATCCAAACTTTGAAGACACAGTCGAGATCCCAAGTGTCTGATGATTATCATGGTATTGATCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

12.78

Weight (kDa)

11.14

Isoelectric Point (pI)

49.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005514)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06390
prunus_persica	Prupe.7G218200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0092131
rosa_laevigata	RLG00000016276 RLG00000017332 RLG00000026233
rosa_multiflora	Rmu_sc0000218.1_g000035 Rmu_sc0002316.1_g000052 Rmu_sc0013552.1_g000003 Rmu_sc0039110.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149470
rosa_rugosa	Rorug02G0022900 Rorug02G0202800 Rorug02G0487900 Rorug04G0137700 Rorug04G0224400 Rorug05G0380400
rosa_samantha	Rh1DG169300 Rh2AG068700 Rh2AG499500 Rh2BG068000 Rh2DG281100 Rh3AG180300 Rh3BG206500 Rh3CG203600 Rh3CG221900
rosa_wichuraiana	Rw2G005270 Rw2G041000 Rw5G022820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	207
AclWI	GGATC	7 cut(s)	144, 172, 187, 268, 281, 294, 326
AcoI	YGGCCR	1 cut(s)	199
AcyI	GRCGYC	1 cut(s)	266
AgsI	TTSAA	1 cut(s)	286
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	7 cut(s)	144, 172, 187, 268, 281, 294, 326
Ama87I	CYCGRG	1 cut(s)	219
AoxI	GGCC	1 cut(s)	199
AsuC2I	CCSGG	2 cut(s)	220, 221
AsuHPI	GGTGA	3 cut(s)	16, 154, 208
AvaI	CYCGRG	1 cut(s)	219
BalI	TGGCCA	1 cut(s)	201
BamHI	GGATCC	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	293
BccI	CCATC	1 cut(s)	234
BcnI	CCSGG	2 cut(s)	220, 221
BcoDI	GTCTC	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	230
BglI	GCCNNNNNGGC	1 cut(s)	207
BisI	GCNGC	1 cut(s)	208
BlsI	GCNGC	1 cut(s)	209
Bme1390I	CCNGG	2 cut(s)	220, 221
BmeT110I	CYCGRG	1 cut(s)	219
BmiI	GGNNCC	2 cut(s)	56, 275
BmrFI	CCNGG	2 cut(s)	220, 221
BpiI	GAAGAC	1 cut(s)	293
BpuMI	CCSGG	2 cut(s)	220, 221
BsaBI	GATNNNNATC	1 cut(s)	318
BsaHI	GRCGYC	1 cut(s)	266
BsaJI	CCNNGG	3 cut(s)	202, 219, 269
Bse1I	ACTGG	1 cut(s)	20
Bse8I	GATNNNNATC	1 cut(s)	318
BseDI	CCNNGG	3 cut(s)	202, 219, 269
BseJI	GATNNNNATC	1 cut(s)	318
BseNI	ACTGG	1 cut(s)	20
BshFI	GGCC	1 cut(s)	201
BsiHKCI	CYCGRG	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	220
BsmAI	GTCTC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	201
BsoBI	CYCGRG	1 cut(s)	219
Bsp143I	GATC	7 cut(s)	43, 136, 164, 179, 273, 299, 331
Bsp19I	CCATGG	1 cut(s)	202
BspACI	CCGC	1 cut(s)	207
BspANI	GGCC	1 cut(s)	201
BspLI	GGNNCC	2 cut(s)	56, 275
BspPI	GGATC	7 cut(s)	144, 172, 187, 268, 281, 294, 326
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	3 cut(s)	202, 219, 269
BssMI	GATC	7 cut(s)	43, 136, 164, 179, 273, 299, 331
BssNI	GRCGYC	1 cut(s)	266
BssT1I	CCWWGG	2 cut(s)	202, 269
Bst4CI	ACNGT	2 cut(s)	98, 294
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	266
BstDSI	CCRYGG	1 cut(s)	202
BstKTI	GATC	7 cut(s)	46, 139, 167, 182, 276, 302, 334
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	7 cut(s)	43, 136, 164, 179, 273, 299, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstSCI	CCNGG	2 cut(s)	218, 219
BstSFI	CTRYAG	1 cut(s)	230
BstV2I	GAAGAC	1 cut(s)	293
BstX2I	RGATCY	2 cut(s)	273, 299
BstYI	RGATCY	2 cut(s)	273, 299
BsuRI	GGCC	1 cut(s)	201
BtgI	CCRYGG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	103
Cfr9I	CCCGGG	1 cut(s)	219
CseI	GACGC	1 cut(s)	274
CviAII	CATG	3 cut(s)	172, 203, 323
CviJI	RGCY	3 cut(s)	201, 224, 235
CviKI_1	RGCY	3 cut(s)	201, 224, 235
DpnI	GATC	7 cut(s)	45, 138, 166, 181, 275, 301, 333
DpnII	GATC	7 cut(s)	43, 136, 164, 179, 273, 299, 331
EaeI	YGGCCR	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco130I	CCWWGG	2 cut(s)	202, 269
Eco88I	CYCGRG	1 cut(s)	219
EcoT14I	CCWWGG	2 cut(s)	202, 269
ErhI	CCWWGG	2 cut(s)	202, 269
FaeI	CATG	3 cut(s)	175, 206, 326
FaiI	YATR	4 cut(s)	52, 173, 204, 324
FatI	CATG	3 cut(s)	171, 202, 322
Fnu4HI	GCNGC	1 cut(s)	208
Fsp4HI	GCNGC	1 cut(s)	208
GluI	GCNGC	1 cut(s)	208
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	1 cut(s)	220
HgaI	GACGC	1 cut(s)	274
Hin1I	GRCGYC	1 cut(s)	266
Hin1II	CATG	3 cut(s)	175, 206, 326
HinfI	GANTC	2 cut(s)	62, 112
HpaII	CCGG	1 cut(s)	220
HphI	GGTGA	3 cut(s)	16, 154, 208
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	2 cut(s)	251, 313
Hpy188III	TCNNGA	3 cut(s)	41, 162, 297
Hpy8I	GTNNAC	1 cut(s)	216
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	2 cut(s)	142, 246
HpyCH4III	ACNGT	2 cut(s)	98, 294
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
Hsp92I	GRCGYC	1 cut(s)	266
Hsp92II	CATG	3 cut(s)	175, 206, 326
Kzo9I	GATC	7 cut(s)	43, 136, 164, 179, 273, 299, 331
LpnPI	CCDG	6 cut(s)	16, 33, 125, 139, 147, 233
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	7 cut(s)	45, 138, 166, 181, 275, 301, 333
MboI	GATC	7 cut(s)	43, 136, 164, 179, 273, 299, 331
MboII	GAAGA	9 cut(s)	88, 91, 94, 97, 100, 103, 121, 157, 298
MflI	RGATCY	2 cut(s)	273, 299
MlsI	TGGCCA	1 cut(s)	201
MluCI	AATT	1 cut(s)	34
MluNI	TGGCCA	1 cut(s)	201
MlyI	GAGTC	1 cut(s)	121
MnlI	CCTC	1 cut(s)	127
Mox20I	TGGCCA	1 cut(s)	201
MscI	TGGCCA	1 cut(s)	201
Msp20I	TGGCCA	1 cut(s)	201
MspI	CCGG	1 cut(s)	220
MspR9I	CCNGG	2 cut(s)	220, 221
MwoI	GCNNNNNNNGC	1 cut(s)	207
NciI	CCSGG	2 cut(s)	220, 221
NcoI	CCATGG	1 cut(s)	202
NdeII	GATC	7 cut(s)	43, 136, 164, 179, 273, 299, 331
NlaIII	CATG	3 cut(s)	175, 206, 326
NlaIV	GGNNCC	2 cut(s)	56, 275
NmuCI	GTSAC	1 cut(s)	113
PfeI	GAWTC	1 cut(s)	62
PflFI	GACNNNGTC	1 cut(s)	292
PkrI	GCNGC	1 cut(s)	209
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
PspN4I	GGNNCC	2 cut(s)	56, 275
PsuI	RGATCY	2 cut(s)	273, 299
PsyI	GACNNNGTC	1 cut(s)	292
SatI	GCNGC	1 cut(s)	208
Sau3AI	GATC	7 cut(s)	43, 136, 164, 179, 273, 299, 331
SchI	GAGTC	1 cut(s)	121
ScrFI	CCNGG	2 cut(s)	220, 221
SetI	ASST	2 cut(s)	144, 199
SfcI	CTRYAG	1 cut(s)	230
SmaI	CCCGGG	1 cut(s)	221
Sse9I	AATT	1 cut(s)	34
SsiI	CCGC	1 cut(s)	207
StyD4I	CCNGG	2 cut(s)	218, 219
StyI	CCWWGG	2 cut(s)	202, 269
TaaI	ACNGT	2 cut(s)	98, 294
TaqI	TCGA	2 cut(s)	263, 296
TasI	AATT	1 cut(s)	34
TauI	GCSGC	1 cut(s)	210
TfiI	GAWTC	1 cut(s)	62
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	1 cut(s)	188
TspGWI	ACGGA	1 cut(s)	324
TspMI	CCCGGG	1 cut(s)	219
TspRI	CASTG	1 cut(s)	103
Tth111I	GACNNNGTC	1 cut(s)	292
XmaI	CCCGGG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.